BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11640.1
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928879 jgi|Araly1|928879|scaffold_301336.1 797 0.0
> Ahg928879 jgi|Araly1|928879|scaffold_301336.1
Length=608
Score = 797 bits (431), Expect = 0.0
Identities = 538/588 (91%), Gaps = 13/588 (2%)
Strand=Plus/Plus
Query 3 ATGCATGCCCTCACCAACTCCGGCGCCGTACTTCTCGCCGTGTTACTCTTCTTTCTGCTC 62
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 24 ATGCATGCCCTCACCAACTCCGGCGCCGTACTTCTCGCCGTGTTACTCTTCTTCCTCCTC 83
Query 63 ATCCTTTTCGCCGAGCTCTCTTACATCTTTTGTTGCCGCACCGGATCTTTACCGTCTCCG 122
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 84 GTTCTCCTCGCCGAGCTCTCTTACATCTTTTGTCGCCGCACCGGATCTTTACCGTCTCCG 143
Query 123 GCAAGTAAAGAGGTTCTTTTCCAATTCTTGATGTGTTGCAAGAAGAATCACCACCACTCT 182
||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 144 GCAAGTAAAGAGGTTATTTTCCAATTCTTGATGTGTTGCAAGAAGAA-C-C-ACCACTCT 200
Query 183 CGTATTGAGCCATGCACCGGTATTGTTTCTGTACAGATGGAGGAGGATGTTGTTGCTGCG 242
|||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 201 CGTATTGAGCCAAGTACCGGAATTGTTTCTGTACAGATGGAGGAGGATGTTGTTGCTGCG 260
Query 243 GCGGTGCCTGAGGAGGAATTCGCG-GCGGCGGACAAGTGGCGGGTGTCGAGGCTTCTCTT 301
| || ||| ||||| || || | |||| |||||||||||| |||||||||||||||||
Sbjct 261 GTGGCGCCGGAGGAAGATTT-GTTTGCGGTGGACAAGTGGCGAGTGTCGAGGCTTCTCTT 319
Query 302 CACAATTGAAGAAGAGGATTTGGAACTGGAAgatgatgatgatgatgtgatCTCTGCGGA 361
|||||| || |||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 320 CACAATCGAGGAAGAGGATTTGGAACTGGAAGATGAAGATGATGATGTGGTCTCTGCGAA 379
Query 362 GGTAG-ATAATGGCTTCGAAGTCCAAGTTGATATTCCGGTGGAGTATTCCGGCGATCCAA 420
|| || |||||| | |||| ||| |||||| ||||||||||| ||||||||||||||||
Sbjct 380 GG-AGGATAATGACGGCGAACTCCGAGTTGACATTCCGGTGGAATATTCCGGCGATCCAA 438
Query 421 CTCCGTTCTTGACGCCGTGCAACTCACCTCCTTACTTTACTCCTTCGCCATCTCCTGGTC 480
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 439 CTCCGTTCTTGACGCCATGCGACTCACCTCCTTACTTCACTCCTTCGCCATCTCCTGGTC 498
Query 481 GGGATATGGATGACGTCATTGATGTATATGAAGTCAGCAGCAGAAAC------TGTTGTT 534
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 499 GGGATATGGATGACGTCATTGATGTTTATGAAGTCAGCAGCAGAAACAGAAACTGTTGTT 558
Query 535 TCAATTTCCAAGGCTCTCAGATGTGTTAACATTTTTTGCATAATTCCA 582
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 559 TCAATTTCCAAGGCTCTCAGATGTGTTAACATTTTTTGCTTAATTCCA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25732968975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5