BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11650.1
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497322 jgi|Araly1|497322|fgenesh2_kg.222__1__AT3G11650.1 1173 0.0
Ahg478510 jgi|Araly1|478510|fgenesh2_kg.3__1211__AT3G11650.1 1173 0.0
Ahg940069 jgi|Araly1|940069|scaffold_600613.1 296 2e-79
> Ahg497322 jgi|Araly1|497322|fgenesh2_kg.222__1__AT3G11650.1
Length=788
Score = 1173 bits (635), Expect = 0.0
Identities = 740/790 (94%), Gaps = 9/790 (1%)
Strand=Plus/Plus
Query 21 AATTTCTCTCTGAGGCAATTCGTCGAACAACATGGGGTCCAAACAACCATACCTAAACGG 80
|||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1 AATTTCTCTCTGAGGCAAATCGTCGAAC-ACATGGGGACCAAACAACCATACCTAAACGG 59
Query 81 CGCGTACTACGGACCATCAATTCCACCACCGCCTAAGGCTCACCGCAGCTATAACTCACC 140
||| |||||||||||||||||||| || ||| |||| |||||||||||||| |||||||
Sbjct 60 CGCATACTACGGACCATCAATTCCTCCGCCGGCTAAAGCTCACCGCAGCTACGACTCACC 119
Query 141 TGGATTCGGATGCTGTTGCTTCAGCTGCCTCGGAAGCTGTCTACGTTGCTGCGGTTGCTG 200
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TGGATTCGGATGCTGTTGCTTCAGCTGCCTCGGAAGCTGTCTACGCTGCTGCGGTTGCTG 179
Query 201 CATCTTAAGCCTGATCTGCAACATCCTCATAGCTGTAGCCGTAATCCTCGGAGTCGCCGC 260
||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||
Sbjct 180 CATCTTAAGCCTGATCTGCAACATCCTCATAGCCATAGCCGTAATCCTCGCAATCACCGG 239
Query 261 TCTTATCCTCTGGCTCATCTTCCGTCCAAACGCCGTCAAATTCTACGTCGCCGACGCTAA 320
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTTATCCTCTGGCTCATATTCCGTCCAAACGCCGTCAAATTCTACGTCGCCGACGCTAA 299
Query 321 TCTGAACCGATTCAGCTTCGATCCAAACAAC-A-A-C---CTCCATTACAGTCTCGATCT 374
|||||||||||||||||||||| |||||||| | | | ||||||||||||||||||||
Sbjct 300 TCTGAACCGATTCAGCTTCGATTCAAACAACAACAGCAATCTCCATTACAGTCTCGATCT 359
Query 375 CAATTTCACAATCCGTAACCCTAATCAACGAGTCGGAGTCTACTACGATGAGTTCTCGGT 434
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CAATTTCACAATCCGTAACCCTAATCAACGAGTCGGAGTCTACTACGATGAGATCTCGGT 419
Query 435 TAGTGGCTATTACGGAGATCAGAGATTCGGATCTGCGAACGTTTCGTCGTTTTATCAAGG 494
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 GAGTGGCTATTACGGTGATCAGAGATTCGGATCTGTGAACGTTTCGTCGTTTTATCAAGG 479
Query 495 GCATAAGAATACGACGGTGATTTTAACCAAAATTGAAGGACAGAATCTGGTGGTGCTCGG 554
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 GCACAAGAATACGACGGTGATTTTAAGAAAAATTGAAGGACAGAATCTGGTGGTGCTCGG 539
Query 555 CGACGGAGCGAGAACAGATCTAAAAGATGATGAGAAATCTGGGATTTATCGGATTAATGC 614
||||||||||||||||||||| || || ||||||||||||||| ||||||||||| ||||
Sbjct 540 CGACGGAGCGAGAACAGATCTGAAGGAAGATGAGAAATCTGGGGTTTATCGGATTGATGC 599
Query 615 GAAATTGAGGCTAAGTGTTAGGTTTAAGTTTTGGTTTATAAAGTCGTGGAAGCTTAAACC 674
||||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 600 GAAATTGCGGCTAAGTGTTAGGTTTAAGTTTTGGGTGATTAAGTCGTGGAAGCTTAAACC 659
Query 675 AAAGATTAAGTGTGATGATCTTAAGATTCCTCTTGGTTCCTCTAATTCTACAGGAGGGTT 734
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 660 AAAGATTAAGTGTGATGATCTTAAGATTCCTCTTGGTTCCTCTAATTCAACCGGAGGGTT 719
Query 735 TAAGTTTCAACCGGTGCA-GTGTGACTTTGACTTATCTTAGTAAACTCCAAGTTTTATGA 793
|||||||||||| || || |||||| |||||||||||||||| |||||||||||||||||
Sbjct 720 TAAGTTTCAACCAGT-CAAGTGTGATTTTGACTTATCTTAGTCAACTCCAAGTTTTATGA 778
Query 794 ATTCtttttt 803
||| ||||||
Sbjct 779 ATTTTTTTTT 788
> Ahg478510 jgi|Araly1|478510|fgenesh2_kg.3__1211__AT3G11650.1
Length=788
Score = 1173 bits (635), Expect = 0.0
Identities = 740/790 (94%), Gaps = 9/790 (1%)
Strand=Plus/Plus
Query 21 AATTTCTCTCTGAGGCAATTCGTCGAACAACATGGGGTCCAAACAACCATACCTAAACGG 80
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1 AATTTCTCTCTGAGGCAATTCGTCGAAC-ACATGGGGACCAAACAACCATACCTAAACGG 59
Query 81 CGCGTACTACGGACCATCAATTCCACCACCGCCTAAGGCTCACCGCAGCTATAACTCACC 140
||| |||||||||||||| ||||| || ||| |||| ||||||||||||||| |||||||
Sbjct 60 CGCATACTACGGACCATCGATTCCTCCGCCGGCTAAAGCTCACCGCAGCTATGACTCACC 119
Query 141 TGGATTCGGATGCTGTTGCTTCAGCTGCCTCGGAAGCTGTCTACGTTGCTGCGGTTGCTG 200
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TGGATTCGGATGCTGTTGCTTCAGCTGCCTCGGAAGCTGTCTACGCTGCTGCGGTTGCTG 179
Query 201 CATCTTAAGCCTGATCTGCAACATCCTCATAGCTGTAGCCGTAATCCTCGGAGTCGCCGC 260
||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||
Sbjct 180 CATCTTAAGCCTGATCTGCAACATCCTCATAGCCATAGCCGTAATCCTCGCAATCACCGG 239
Query 261 TCTTATCCTCTGGCTCATCTTCCGTCCAAACGCCGTCAAATTCTACGTCGCCGACGCTAA 320
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTTATCCTCTGGCTCATATTCCGTCCAAACGCCGTCAAATTCTACGTCGCCGACGCTAA 299
Query 321 TCTGAACCGATTCAGCTTCGATCCAAACAAC-A-A-C---CTCCATTACAGTCTCGATCT 374
|||||||||||||||||||||| |||||||| | | | ||||||||||||||||||||
Sbjct 300 TCTGAACCGATTCAGCTTCGATTCAAACAACAACAGCAATCTCCATTACAGTCTCGATCT 359
Query 375 CAATTTCACAATCCGTAACCCTAATCAACGAGTCGGAGTCTACTACGATGAGTTCTCGGT 434
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CAATTTCACAATCCGTAACCCTAATCAACGAGTCGGAGTCTACTACGATGAGATCTCGGT 419
Query 435 TAGTGGCTATTACGGAGATCAGAGATTCGGATCTGCGAACGTTTCGTCGTTTTATCAAGG 494
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 420 GAGTGGCTATTACGGTGATCAGAGATTCGGATCTGTGAACGTATCGTCGTTTTATCAAGG 479
Query 495 GCATAAGAATACGACGGTGATTTTAACCAAAATTGAAGGACAGAATCTGGTGGTGCTCGG 554
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 GCATAAGAATACGACGGTGATTTTAACAAAAATTGAAGGACAGAATCTGGTGGTGCTCGG 539
Query 555 CGACGGAGCGAGAACAGATCTAAAAGATGATGAGAAATCTGGGATTTATCGGATTAATGC 614
||||||||||||||||||||| || || ||||||||||||||| ||||||||||| ||||
Sbjct 540 CGACGGAGCGAGAACAGATCTGAAGGAAGATGAGAAATCTGGGGTTTATCGGATTGATGC 599
Query 615 GAAATTGAGGCTAAGTGTTAGGTTTAAGTTTTGGTTTATAAAGTCGTGGAAGCTTAAACC 674
||||||| ||||||||||| |||||||||||||| | || ||||||||||||||||||||
Sbjct 600 GAAATTGCGGCTAAGTGTTCGGTTTAAGTTTTGGGTGATTAAGTCGTGGAAGCTTAAACC 659
Query 675 AAAGATTAAGTGTGATGATCTTAAGATTCCTCTTGGTTCCTCTAATTCTACAGGAGGGTT 734
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 660 AAAGATTAAGTGTGATGATCTTAAGATTCCTCTTGGTTCCTCTAATTCAACCGGAGGGTT 719
Query 735 TAAGTTTCAACCGGTGCA-GTGTGACTTTGACTTATCTTAGTAAACTCCAAGTTTTATGA 793
|||||||||||| || || |||||| |||||||||||||||| |||||||||||||||||
Sbjct 720 TAAGTTTCAACCAGT-CAAGTGTGATTTTGACTTATCTTAGTCAACTCCAAGTTTTATGA 778
Query 794 ATTCtttttt 803
|| ||||||
Sbjct 779 TTTTTTTTTT 788
> Ahg940069 jgi|Araly1|940069|scaffold_600613.1
Length=736
Score = 296 bits (160), Expect = 2e-79
Identities = 466/609 (77%), Gaps = 39/609 (6%)
Strand=Plus/Plus
Query 177 CTGTCTACGTTGCTGCGGTTGCTGCATCTTAAGCCTGATCTGCAACATCCTCATAGCTGT 236
|||||| | |||||||| ||||| ||||||||| | |||| ||||||||||||| | |
Sbjct 125 CTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAACCAT 184
Query 237 AGCCGTAATCCTCGG-AGTCGCCGCTCTT-ATCCTCTGGCTCATCTTCCGTCCAAACGCC 294
|||||| | || || | | || ||| || ||| |||||||||| ||||| || |||||
Sbjct 185 AGCCGTCTTACTAGGCA-TAGCTGCT-TTGATCATCTGGCTCATTTTCCGACCCAACGCT 242
Query 295 GTCAAATTCTACGTCGCCGACGCTAATCTGAACCG-ATTCAGC-TTCGATCCAAACAACA 352
|||||||| ||||| |||| ||||| || |||| ||||| | |||| |||| |||||
Sbjct 243 ATCAAATTCCACGTCACCGATGCTAAGCT-CACCGAATTCA-CACTCGACCCAACCAACA 300
Query 353 ACCTCC-ATTACAGTCTCGATCTCAATTTCACAATCCGTAACCCTAATCAACG-AGTCGG 410
|||||| | |||| |||||| |||||||||||||||||||||||||||| ||| | ||||
Sbjct 301 ACCTCCGA-TACAATCTCGACCTCAATTTCACAATCCGTAACCCTAATCGACGGA-TCGG 358
Query 411 AGTCTACTACGATGAGTTCTCGGTTAGTGGCTATTACGGAGATCAGAGATTCGG-ATCTG 469
|| ||||| ||||| || || || || || ||||| |||||| ||||||| || |
Sbjct 359 TGTTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGCATGAG 418
Query 470 CGA-A-CGTTTCGTCGTTTTATCAAGGG-CATAAGAATACGACGGTGATTTTAACCAAAA 526
| | | | ||| |||||| || ||| |||||||| ||||| ||| || ||| |||
Sbjct 419 TAACAACATCTCGAAGTTTTACCA-GGGACATAAGAACACGACAGTGGTTGGAACTAAAC 477
Query 527 T-TGAAGGACAG-AATCTGGTGGTGCTCGGCGACGGAGCGAGAACAG-ATCTAAAAGATG 583
| | |||||| ||| ||||| |||| | || ||||| ||| | || |||| || || |
Sbjct 478 TCTCC-GGACAGCAAT-TGGTGATGCTTGACGGCGGAGAGAGGA-AGGATCTGAACGAGG 534
Query 584 ATGAGAAATCTGGGATTTATCGGATTAATGCGAAA-TTGAGGCTAAGTG-TTAGGTTTAA 641
||| ||| ||| ||| ||| |||| ||||||| || || || || | ||||||||||
Sbjct 535 ATGTGAATTCTCAGATCTATAGGATCGATGCGAAGCTT-AGACTTAG-GATTAGGTTTAA 592
Query 642 GTTTTGGTTTATAAAGTCGTGGAAGCTTAAA-CCAAAGATTAAGTGTGATGATCTTAAGA 700
|||| |||| || |||||||||| | || || |||||| | ||||||||| || |||
Sbjct 593 GTTTGGGTTGATCAAGTCGTGGAGG-TTCAAGCCAAAGGTCAAGTGTGATC-TC--AAGG 648
Query 701 TTCCTCTTGGTTCCTCTAATTCTAC-AGGAGGGTTTAAGTTTCAACCGGTGCA-GTGTGA 758
|||||||| |||||||||| || || |||||| |||||| ||| || ||||||
Sbjct 649 TTCCTCTTA---CCTCTAATTCAACCAGC-GGGTTTGTGTTTCAGCCGAC-CAAGTGTGA 703
Query 759 CTTTGACTT 767
| |||||||
Sbjct 704 CGTTGACTT 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5