BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11680.1 Length=1467 Score E Sequences producing significant alignments: (Bits) Value Ahg317949 jgi|Araly1|317949|fgenesh1_pm.C_scaffold_3000965 2235 0.0 > Ahg317949 jgi|Araly1|317949|fgenesh1_pm.C_scaffold_3000965 Length=1470 Score = 2235 bits (1210), Expect = 0.0 Identities = 1387/1473 (94%), Gaps = 9/1473 (1%) Strand=Plus/Plus Query 1 ATGGATTTGAATGCTCAAGAGAAGAAAGCAGGGTTCTTTCAAAGGCTTCAGGATTTCCCT 60 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 1 ATGGATTTGAATGCTCAAGAGAAGAAAGCAGGGTTCTTTCAAAGGCTTAAGGAATTCCCT 60 Query 61 AGCAAGCTCAAAGACGATGTCACCAAACGCGTAAAGAATGTGCAAAAGTTTGCGAAAGAT 120 || ||||||||||||| ||||||||||||| | ||||||||| ||||||||| ||||||| Sbjct 61 AGGAAGCTCAAAGACGGTGTCACCAAACGCATGAAGAATGTGAAAAAGTTTGGGAAAGAT 120 Query 121 GATCCAAGACGGATCATCCACTCCATGAAAGTGGGGGTTGCTCTCACATTAGTGTCATTG 180 ||||||||||| ||||| |||||||||||||| || ||||||||||||||||| |||||| Sbjct 121 GATCCAAGACGAATCATTCACTCCATGAAAGTTGGAGTTGCTCTCACATTAGTATCATTG 180 Query 181 TTGTACTATGTGCGACCACTCTACATCAGCTTTGGGGTCACGGGTATGTGGGCGATACTT 240 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 TTGTACTATGTGCGAGCACTCTACATCAGCTTCGGGGTCACGGGTATGTGGGCGATACTT 240 Query 241 ACCGTAGTCGTGGTCTTCGAATTCACTGTTGGTGGAACACTTTCCAAAGGTTTAAACAGA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACCGTAGTCGTGGTCTTCGAATTCACTGTTGGTGGAACACTTTCCAAAGGTTTAAACAGA 300 Query 301 GGGTTTGCAACATTAATAGCAGGAGCCTTAGGGGTTGGGGCAGTACACCTTGCTCGTTTC 360 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGTTTTGCGACATTAATAGCAGGAGCCTTAGGGGTTGGGGCAGTACACCTTGCTCGTTTC 360 Query 361 TTTGGGCATCAAGGAGAGCCCATAGTTCTTGGGATCTTAGTGTTCTCACTAGGCGCAGCT 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 TTTGGGCATCAAGGAGAGCCCATAGTTCTTGGGATCTTAGTGTTCTCACTAGGCGGAGCT 420 Query 421 GCAACATTTTCGCGGTTTTTCCC-ACGGATTAAACAGAGATATGACTATGGTGCTCT-GA 478 ||||||||||||||||||||||| | |||| ||||| ||||||||||| ||||| || || Sbjct 421 GCAACATTTTCGCGGTTTTTCCCTA-GGATCAAACATAGATATGACTACGGTGC-CTTGA 478 Query 479 TATTCATACTCACATTTAGTTTCGTTGCGATTTCGGGTTACCGTACAGATGAAATATTGA 538 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 479 TATTCATACTCACATTTAGTTTCGTTGCCATTTCGGGTTACCGTACAGATGAGATATTGA 538 Query 539 TTATGGCATATCAAAGACTATCGACTATTCTTATCGGTGGCACGATCTGCATCCTTGTGT 598 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTATGGCATACCAAAGGCTATCGACTATTCTTATCGGTGGCACGATCTGCATCCTTGTGT 598 Query 599 CGATTTTCATTTGTCCTGTATGGGCTGGCGAAGATCTTCACAAGATGATTGCTAACAACA 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CGATTTTCATTTGTCCTGTATGGGCTGGCGAAGATCTTCACAAGATGATTGCTAACAACA 658 Query 659 TTAACAAACTTGCTAAGTACCTAGAAGGATTCGAGGGTGAATATTTTCAACCGGAGAAGA 718 | |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 659 TAAACAAACTTGCTAAGTACCTAGAAGGTTTCGAGAGTGAATATTTTCAACCGGAGAAGA 718 Query 719 TTTCAAAGGAGACAAGCTCGTGTGTTCGAGAATACAAAAGCATTCTAACATCAAAAAGCA 778 ||||||||||||||| ||||||||| |||||||| || |||||||| ||||||||||||| Sbjct 719 TTTCAAAGGAGACAAACTCGTGTGTCCGAGAATATAAGAGCATTCTGACATCAAAAAGCA 778 Query 779 CTGAAGATAGTTTGGCGAATCTTGCAAGATGGGAACCAGGGCATGGACGTTTCAGGTTAC 838 ||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 779 CTGAAGATACTTTGGCGAATCTTGCTAGGTGGGAACCAGGGCATGGCCGTTTCAGGTTAC 838 Query 839 GGCACCCGTGGAAAAAGTACTTGAAAATTGCAGGACTCGTTCGCCAATGTGCCGTCCATT 898 |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 839 GGCATCCGTGGAAAAAGTACTTGAAAATTGCAGGTCTCGTTCGCCAATGTGCCTTCCATT 898 Query 899 TAGAAATCCTCAATGGCTACGTTCTTTCAAACGATAAGGCACCACAAGAATTCGAAAGTA 958 | ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| Sbjct 899 TCGAAATCCTCAATGGCTACGTTCTCTCTAACGATAAGGCACCACAAGAATTCGACAGTA 958 Query 959 AGATTCAAGAGCCAATCACGACTATGAGCAGAGAAGTTGGTGAAGCCCTAAAAGCCATAG 1018 || |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | Sbjct 959 AGTTTCAAGAGCCAATCACGATTATGAACAGAGAAGTTGGTGAAGCCCTAAAAGCCATGG 1018 Query 1019 CCAAATCTATTAAAACAATGAGGAACGATAGTGCTTGTGTGAACGCACACATTGACAACT 1078 |||||||||| || |||||||| || || ||||||||||||||| ||||||||||||||| Sbjct 1019 CCAAATCTATCAAGACAATGAGCAAAGACAGTGCTTGTGTGAACTCACACATTGACAACT 1078 Query 1079 CCAAAAAGGCCATTAAAAACTTAAAGATTGCACTCAAATCTTCTTATCCAGAGACATATA 1138 |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| | | Sbjct 1079 CCAAAAAGGCCATTGTAAACTTAAGGATTGCACTCAAATCTTCTTATCCAGACACAGAGA 1138 Query 1139 AAGATCTTTTGGAGATCATTCCCGGAGTCACAATGGCATCAATCCTGATCGAGGTCGTGA 1198 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1139 AAGATCTTTTGGAGATCATTCCCGGAGTCACAATGGCATCAATCCTGATCGAGGTTGTGA 1198 Query 1199 ATTGCGTCGAGAAGATCTAC-GAGGCTGTGGAAGAATTCTCTGGTCTTGCACATTTCAAA 1257 |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 1199 ATTGCGTCGAGAAGATCT-CTGAGGCTGTCGAAGAATTCTCTGGTCTTGCACATTTCAAA 1257 Query 1258 GAGACTTTGGATTCAAAACTATCAGCGGAGATAGGACAACATCAATTACTCCACAGGGGA 1317 |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1258 GAGACTTTGGATCCAAAATTATCAGCGGAGATAGGACAACATCAGTTACTCCACAGGGGA 1317 Query 1318 TGTGTAAAGCCGGTTCTAGATGGCGACAACGAGAAAGAAGACAATAGCTCAT-GTC--AT 1374 ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| || Sbjct 1318 AGTGTAAAGCCGGTTCCAGATGGCGACAACGAGAAAGAAGACAATAGCTCGTCGTCTCAT 1377 Query 1375 GTTCTTATCACTGTCCATGATGAAGGATATCTACCGACGGCCACCGCGAAGAACGTTTTG 1434 ||||||||| ||||||||||||||| | | | ||| |||||||| ||||||||||||||| Sbjct 1378 GTTCTTATCCCTGTCCATGATGAAGAACAGCCACCAACGGCCACTGCGAAGAACGTTTTG 1437 Query 1435 GGAGCAGAGAAGACTAGAGTAGATATTGTGTGA 1467 |||||||||||||| ||||||||| |||||||| Sbjct 1438 GGAGCAGAGAAGACGAGAGTAGATGTTGTGTGA 1470 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54888043045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5