BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11690.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478514 jgi|Araly1|478514|fgenesh2_kg.3__1215__AT3G11690.1 1397 0.0
> Ahg478514 jgi|Araly1|478514|fgenesh2_kg.3__1215__AT3G11690.1
Length=1259
Score = 1397 bits (756), Expect = 0.0
Identities = 928/1004 (92%), Gaps = 39/1004 (4%)
Strand=Plus/Plus
Query 488 acaaaaaCTATGAACACGACGTTACGTTACGATCCGAGACAGATCTCGAGGCAAACGAAA 547
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 286 ACAAAAACTATGAACACGACGTTACGTTACGATCCAAGACAGATCTCGAGGCAAACGAAA 345
Query 548 CCGTCAGATACACCATCGTCTTCTCCGTCTCGTAGTAACCGGAGACAGCCTTTGCTTCAG 607
||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 346 CCGTCTGATACTCCATCGTCTTCTCCGTCTCGTAGTCACCGGAGACAGCCTTTGCTTCAG 405
Query 608 AGAAGTCTCTCTTCTCCGTCACCACGAGCTTCTTGCGGCGGATCTACTCCCGCCGAGTTT 667
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 406 AGAAGTCTCTCTTCTCCCTCACCAAGAGCTTCTTGCGGCGGATCTACTCCCGCCGAGTTT 465
Query 668 TGCGGTGGTACGACGGCGAGTTGCGCCGCCGTGTGGTGTTGTTGTCCCTGCGGACTCGTT 727
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 466 TGTGGTGGTACGACGGCGAGTTGCGCCGCCGTTTGGTGTTGTTGTCCTTGCGGACTCGTT 525
Query 728 AACCTACTCGTTCTCGCGATCTACAAAGTTCCTAAAGGAATCTGCCGTCGCGCTATCAG- 786
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 526 AACCTCCTCGTTCTCGCGATCTATAAAGTTCCTAAAGGAATCTGCCGTCGCGCTATCCGT 585
Query 787 AAGTCGCCGCCGTAAACAACTCGTGAAGAACGGAATCCTTCCGCCGCTTCCGACGGACGG 846
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AA-TCGCCGCCGTAAACAACTCGTGAAGAACGGAATCCTTCCGCCGCTTCCGACGGACGG 644
Query 847 GAAAAACGAGCGGATGCAGAGAGTTTTTCAGAATTCTGAATTCGCGATTCATCCGTTGGA 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 645 GAAAAACGAGCGGATGCAGAGAGTTTTTCAGAATTCTGAATTCGCGATTCATCCATTGGA 704
Query 907 TAGCGACGATGTGTCTGACGACGAAGATGATGATAATTTCTTGGATCTGAAGTATATCGG 966
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 705 TAGCGACGATGTCTCGGACGATGAAGATGATGATAATTTCTTGGATCTGAAGTATATCGG 764
Query 967 AAAATCGGTAGCGACGG-GG--TTTACGACGGAGGAGGAGACTGATGAAGATGATGAGGC 1023
||||||||||||| ||| || |||||||| |||||||||||||||||||| || |||||
Sbjct 765 AAAATCGGTAGCGGCGGCGGGGTTTACGACTGAGGAGGAGACTGATGAAGACGACGAGGC 824
Query 1024 GGTGTTAGCATTAGAGAAAGAGATGTGGAATAGGTTTTACGGAGCTGGATTTTGGCGAAG 1083
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 825 GGTGTTAGCATTAGAGAAAGAGATGTGGAATAGATTTTACGGCGCTGGATTTTGGCGAAG 884
Query 1084 TCCGTCACAGAGAGAATCAGTTTCGTCTCCGAGAGTTTCCAAGTCTCTTTCGTCATCGCC 1143
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCCGTCACAGAGAGAATCGGTTTCGTCTCCGAGAGTTTCCAAGTCTCTTTCGTCATCGCC 944
Query 1144 GAGACAATCGTTTACTGAAGTATACCGGAATAGGGATACAACGGTTAgaggaggaggagg 1203
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 945 GAGACCGTCGTTTACTGAAGTATACCGGAATAGGGACACAACGGTTAGAGGCGGAGGAG- 1003
Query 1204 aggagCTACGGTGGTGGCGGCGACACCAAGAGCCGTTAGGCATTTTGATTAGGGTAAAGA 1263
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1004 -----CTACGGTGGTGGCGGCCACACCAAGAGCCGTTAGGCATTTTGATTAGGGGAAAGA 1058
Query 1264 AAGAGAG-CTT-ATGaaaaa-a-aTGTCTCAAAATGTCTTTTGTTAATAGTTTCATTCGT 1319
|||||| ||| |||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 1059 GAGAGAGGCTTTATGAAAAATATATGTCTCAAAATGTCTTTTGTTAATAGTTTGATTCGT 1118
Query 1320 GTGGCGAGAGttgttgtgtgtgtgagctcaaagtgtgtgtctgcgtttgtcaaatctttg 1379
|||| ||| | ||| |||||||| ||||||||| |||||||||||||||||
Sbjct 1119 GTGGTGAG--T-GTT---------AGCTCAAAATGTGTGTCTCCGTTTGTCAAATCTTTG 1166
Query 1380 gtgtgtgACTTTATTTGCCTATGGTATGGGATTTTGTGATCATCAAATATGAAAATTCGA 1439
|||||||| ||| | || | ||| |||||||||||||||||||||| ||||||
Sbjct 1167 GTGTGTGA-TTT-T------AT--T-TGG-ATTTTGTGATCATCAAATATGACCATTCGA 1214
Query 1440 AATGGAATTGTGTTTTGTCGAAATGTGACATGACATGAGATCTT 1483
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 ACTGGAATTGTGTTTTGTCGAAATGTGACATGACATGAGATCTT 1258
Score = 172 bits (93), Expect = 5e-42
Identities = 134/153 (88%), Gaps = 5/153 (3%)
Strand=Plus/Plus
Query 301 CTC-TCTTCTCGCCGTCGCCATCACCGGAGATAAATTCCGTGGTGCTGCGTTTGGCCTTA 359
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 135 CTCTTCTTCTCGCCGTCGCCATCACCGGAGATAA-TTCCGTGGTGCTGCGTTTGGCCTCA 193
Query 360 CCAAAATTTGAGATCTCAATTGAAGAAAGAAACATAGCGAAGAAGAAGA-CG-A-TCAAG 416
||||||||||||||||||||||||||||||| || ||||| ||||| | | | |||
Sbjct 194 AGGAAATTTGAGATCTCAATTGAAGAAAGAAACAGAGAGAAGACGAAGAACACAATTAAG 253
Query 417 GAATTGAAATTAGATTCTGTTATCTCTCTATCA 449
||||||||||| |||||| | ||||||| |||
Sbjct 254 GAATTGAAATTTGATTCTCATCTCTCTCTCTCA 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5