BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11700.1
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478515 jgi|Araly1|478515|fgenesh2_kg.3__1216__AT3G11700.1 2691 0.0
Ahg487448 jgi|Araly1|487448|fgenesh2_kg.6__582__AT5G06390.1 1112 0.0
> Ahg478515 jgi|Araly1|478515|fgenesh2_kg.3__1216__AT3G11700.1
Length=1899
Score = 2691 bits (1457), Expect = 0.0
Identities = 1795/1949 (92%), Gaps = 60/1949 (3%)
Strand=Plus/Plus
Query 1 AAAACTCACAtctatctctatctctcttctctgtctctcactctcCACTTTCCGATCACC 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AAAACTCACATCTATCTCTATCTCTCTTCTCTGTCTCTCACTCCCCACTTTCCGAT---- 56
Query 61 GACGATTCAACAAAACATAGTAAAAAACAAAGCAAATTCtttttttCTCCTTAGTTACTT 120
| | | | ||||| || |||||||| || ||| |||| || |||
Sbjct 57 --C-A--C--C-AAACAGAG-AAAAAACATAGTAAA-------------CTTAATTCCTT 94
Query 121 CTTCTACAGATTATCTCAATCTTACAGAGCACCATGGATCGTTGTATCTATGGTTGCTCC 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CTTCTACAGATTATCTAAATCTTACAGAGCACCATGGATCGTTGTATCTATGGTTGCTCC 154
Query 181 GTCATTACTATCTTCTTCTCCTTCTTCTTCCTCCTCAATGCATCCGCTTTAGAATCGGGT 240
|||||||||| || | | |||||||||||| |||||||||| ||| | |||||||||
Sbjct 155 GTCATTACTA---TC-T-T-CTTCTTCTTCCTGATCAATGCATCTGCTCTCGAATCGGGT 208
Query 241 CACCACAACATAACTGGGTCGGGTCAAATAAACTCAAACTCCGTCCTCGTAGCTCTCCTC 300
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 209 CACCACAACATAACCGGGTCGGGTCAAATCAACTCAAACTCCGTCCTCGTTGCTCTCCTC 268
Query 301 GATTCTCGTTACACTGAACTCGCCGAGCTAGTTGAGAAGGCTCTTCTTCTCCAAACCCTC 360
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 269 GACTCTCGTTACACTGAACTCGCCGAGCTCGTTGAGAAGGCTCTTCTTCTCCAAACCCTC 328
Query 361 GAAGACGCCGTTGGTCGTCACAATATTACTATTTTCGCCCCACGCAATGAAGCACTCGAG 420
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 329 GAAGACGCCGTTGGTCGTCACAATATTACTATTTTTGCTCCTCGCAATGAAGCACTCGAG 388
Query 421 CGTGACCTTGACCCGGATTTTAAACGGTTCTTGCTCCAACCAGGTAACCTCAAATCTCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CGTGACCTTGACCCGGATTTTAAACGGTTCTTGCTCCAACCAGGTAACCTCAAATCTCTC 448
Query 481 CAAACGCTTCTCTTGTCTCACATTATCCCCAAACGAGTCGGGTCAAACCAATGGCCTGAG 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 449 CAAACGCTTCTCTTGTCTCACATTATCCCCAAACGAGTCGGTTCAAACCAATGGCCTGAG 508
Query 541 GAGAATTCGGGTCGGGTCAAACACGTCACGTTAGGGCATGACCAAGTGCTGCATTTGAGT 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GATAATTCGGGTCGGGTCAAACACGTCACGTTAGGGCATGACCAAGTGCTGCATTTGAGT 568
Query 601 AAACTCAAAGGAACAAATGGAAAGAGATTGGTGAATTCCGCTGTAATTACCCGACCCGAT 660
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AAACTCAAAGGAGCGAATGGAAAGAGATTGGTGAATTCCGCTGTAATTACCCGACCCGAT 628
Query 661 GATTTAACCCGACCCGACGGGTTGATCCACGGAATCGAACGGCTTTTAATCCCTCGTTCC 720
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 629 GATTTGACCCGACCCGACGGGTTGATCCACGGAATCGAAAGGCTTTTAATCCCTCGCTCC 688
Query 721 GTTCAAGAAGATTTCAACCGACGGAGAAATCTCCGATCAATCTCCGCCGTATTACCCGAA 780
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 689 GTTCAAGAAGATTTCAACCGTCGGAGAAATCTCCGATCAATCTCCGCGGTATTACCCGAA 748
Query 781 GGAGCTCCGGAAATCGACCCGAGAACCAACCGTCTCAAGAAATCTGCCACCGCCGTCTCA 840
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 749 GGAGCTCCGGAAATCGATCCGAGAACCAACCGTCTCAAGAAATCCGCCACCGCCGCCTCA 808
Query 841 GTACCCGCCGGATCTCCACCAGTGCTTCCGATTGAATCCGCTATGGCTCCAGGTCCATCG 900
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 809 GTACCCGCCGGATCTCCACCAGCGCTTCCGATTGAATCCGCTATGGCTCCAGGTCCGTCG 868
Query 901 CTAGCTCCGGCTCCGGCTCCAGGACCTGGAGGTGCACACAAACATTTCAACGGCGATGCT 960
||||| |||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||
Sbjct 869 CTAGCCCCGGCTCCGGCTCCGGGACCAGGAGGTGCGCACAAACACTTCAACGGGGATGCT 928
Query 961 CAGGTCAAAGATTTCATCCACACATTGTTACATTACGGTGGATACAACGAAATGGCGGAT 1020
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 929 CAGGTCAAAGATTTCATCCACACATTGTTACATTACGGCGGATACAACGAAATGGCCGAT 988
Query 1021 ATTCTCGTGAATCTGACGTCACTTGCGACGGAGATGGGTCGATTGGTGTCAGAAGGTTAC 1080
||||| || |||||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 989 ATTCTTGTAAATCTGACGTCACTGGCGACAGAGATGGGTCGATTAGTGTCGGAAGGTTAC 1048
Query 1081 GTCCTCACCGTGTTAGCTCCGAACGATGAAGCTATGGGGAAATTAACGACTGATCAGCTT 1140
|||||||||||||||||||| ||||| |||||||||| |||||| ||||| |||||||||
Sbjct 1049 GTCCTCACCGTGTTAGCTCCTAACGACGAAGCTATGGCGAAATTGACGACAGATCAGCTT 1108
Query 1141 AGCGAGCCCGGAGCTCCGGAGCAAATTATGTATTACCACATTATTCCAGAGTATCAGACG 1200
||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||
Sbjct 1109 AGCGAGCCCGGAGCTCCGGAGCAAATTATGTATTATCACATTATACCGGAGTATCAAACG 1168
Query 1201 GAGGAAAGCATGTATAATTCTGTTAGGAGATTTGGGAAGGTGAAGTATGAAACGCTGCGT 1260
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1169 GAGGAGAGTATGTATAATTCGGTTAGGAGATTTGGGAAGGTGAAGTATGAAACGCTGCGT 1228
Query 1261 TTTCCTCACAAGGTTGGGGCTAAAGAAGCTGATGGCTCGGTTAAATTCGGTTCTGGTGAC 1320
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1229 TTTCCTCACAAGGTTGGGGCTAAAGAAGCCGATGGCTCGGTTAAGTTCGGTTCTGGTGAT 1288
Query 1321 CGGTCGGCTTATTTGTTTGATCCGGATATTTACACCGATGGTCGCATTTCGGTTCAGGGG 1380
|||||||| ||| | ||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 1289 CGGTCGGCGTATCTCTTTGATCCGGATATTTACACCGACGGGCGAATTTCTGTTCAGGGG 1348
Query 1381 ATTGATGGTGTTTTGTTCCCAGAGGAGAAGGAAGAAGAGACGGTTAAGAAACCGACCGGT 1440
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1349 ATTGATGGTGTTTTGTTCCCGGAGGAGAAGGAAGAAGAGACGGTTAAGAAAACGACCGGT 1408
Query 1441 CCGGTTAAGAAAGTTGTTCAGCCGAGAAGAGGGAAGTTGCTGGAAGTAGCATGTAGTATG 1500
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1409 CCGGTTAAGAAAGTTGTTCAGCCAAGAAGAGGGAAGTTGCTGGAAGTAGCATGTAGAATG 1468
Query 1501 CTTGGAGCTATTGGGAAGGACTCATATCTAAGCAGATGCTGATGAATTCACAAACCTGAA 1560
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1469 CTTGGAGCTATTGGCAAGGACTCATATCTAAGTAGATGCTGATGGATTCACAAACCCGAA 1528
Query 1561 GAGATTATTGAAGGAAAATCTCTCAAGTGTTATCTGTAAA-CACACACAAAAGGTTCTTT 1619
|||||||||| || ||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 1529 GAGATTATTGTAGAAAAATCTCTCAAGTGTTAT-TGTAAAACACATACAAAAGGTTCTTT 1587
Query 1620 GGAGCAGAATGAAAGATTTAGAAGAAGAGCaaaaaaaaaaaaaaaaaaCAAGAGAGTAAT 1679
|||| |||||||||||||| || |||||||||||||||| ||| | | ||
Sbjct 1588 GGAGAAGAATGAAAGATTTGGAGGAAGAGCAAAAAAAAA---------CAA-A-A--AA- 1633
Query 1680 ACATCAATGTCCAAAACTTCAAAAGAATATTCTTCAGTGGAATATGAGAATAGGGTTTGT 1739
|||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||
Sbjct 1634 -CATCAATGTCCAAAACTTCAAAAGCATATTCTTCAATGGAATATGAAAA-AGGGTTTGT 1691
Query 1740 TGAGttttttt-------ATATAAAAAATAttttttttGGGTGGGGTTTTGATTTTGGGG 1792
|| |||||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct 1692 TGGGTTTTTTTTTTTCTTATATAAAAAA-ATATTTTTTGGGTGGGGTTTTGATTTTGGGG 1750
Query 1793 TTATAAATACTGTAATTAGATATAAGAACTCATTTTTTCAATTGATTTGGTGTATGAAAA 1852
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1751 TTATAAATACTGTAATTAGATATATGAACTCATTTTTTCAATTGATTTGGTGTATGAAAA 1810
Query 1853 ATGAATCAAAAAGTGGGGAGCAAAAGAAAAAGTCTTGAGAACCCACCACCACTTTCTTTC 1912
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1811 ATGAATCATAAAGTGGGGAACAAAAGAAAAAGACTTGAGAACCCACCACCACTTTCTTTC 1870
Query 1913 TTCT--ACTTGGTCCTTTATTTGTGAATG 1939
|||| |||||| ||||||||||||||||
Sbjct 1871 TTCTCTACTTGGCCCTTTATTTGTGAATG 1899
> Ahg487448 jgi|Araly1|487448|fgenesh2_kg.6__582__AT5G06390.1
Length=1921
Score = 1112 bits (602), Expect = 0.0
Identities = 1091/1320 (83%), Gaps = 62/1320 (5%)
Strand=Plus/Plus
Query 256 GGGTCGGGTCAAATAAACTCAAACTCCGTCCTCGTAGCTCTCCTCGATTCTCGTTACACT 315
||||| ||||| || ||||| ||||| |||||||||||||| || || ||||||||||||
Sbjct 196 GGGTCAGGTCAGATCAACTCCAACTCTGTCCTCGTAGCTCTTCTTGACTCTCGTTACACT 255
Query 316 GAACTCGCCGAGCTAGTTGAGAAGGCTCTTCTTCTCCAAACCCTCGAAGACGCCGTTGGT 375
|| || || ||||| || ||||| |||||||| ||||| || || |||||||| ||||||
Sbjct 256 GAGCTAGCTGAGCTCGTCGAGAAAGCTCTTCTCCTCCAGACACTTGAAGACGCTGTTGGT 315
Query 376 CGTCACAATATTACTATTTTCGCCCCACGCAATGAAGCACTCGAGCGTGACCTTGACCCG 435
|||||||||||||| ||||| ||||| ||||||||||| || || ||||||||||||||
Sbjct 316 CGTCACAATATTACCATTTTTGCCCCTCGCAATGAAGCTCTTGAACGTGACCTTGACCCT 375
Query 436 GATTTTAA-ACGGTTCTTGCTCCAACCAGGTAACCTCAAATCTCTCCAAACGCTTCTCTT 494
|| || || | ||||||||||| | |||||||| ||||||||||||||||| || || |
Sbjct 376 GAGTTCAAGA-GGTTCTTGCTCGAGCCAGGTAATCTCAAATCTCTCCAAACACTCCTAAT 434
Query 495 G-TCTCACATTATCCCCAAACGAGTCGGGTCAAACCAATGGCCT-GAGGAGAATTCGGGT 552
| || |||||||| ||||| || ||||||| ||||||||||| || |||| ||||||
Sbjct 435 GTTC-CACATTATACCCAATCGGGTCGGGTTGGACCAATGGCCTCCAGAAGAA-TCGGGT 492
Query 553 CGGGTCAAACACGTCACGTTAGGGCATGACCAAGTGCTGCATTTGAGTAAACTCAAAGGA 612
|||||||| ||| |||| ||||| | || | || | | |||||||| ||| ||
Sbjct 493 CGGGTCAAGCACCACACGCTAGGGAACGATC-AG-G-TCCATTTGAG------CAATGG- 542
Query 613 ACAAATGG-AAAGAGATTGG-TGAATTC-CGCTGTA-ATTACCCGACCCGATGATTTAAC 668
| || || ||| ||| ||| || | || |||| | |||| ||||||||||||||| ||
Sbjct 543 A-GAA-GGAAAAAAGA-TGGTTG-A-TCTAGCTG-AGATTATCCGACCCGATGATTTGAC 596
Query 669 CCGACCCGACGGGTTGATCCACGGAATCGAACGGCTTTTAATCCCTCGTTCCGTTCAAGA 728
|||||||||||| ||||||||||| |||||||||||| | || ||||| |||||||||||
Sbjct 597 CCGACCCGACGGATTGATCCACGGGATCGAACGGCTTCTCATTCCTCGCTCCGTTCAAGA 656
Query 729 AGATTTCAACCGACGGAGAAATCTCCGA-TCAATCTCCGCCGTATTACCCGAAGGAGCTC 787
||||||||| || || | | |||| | |||||| ||||||| ||||||||||||||||
Sbjct 657 AGATTTCAATCGTCGTCGTAGCCTCC-AGTCAATCACCGCCGTTTTACCCGAAGGAGCTC 715
Query 788 CGGAAATCGACCCGAGAACCAACCGTCTCAAGAAATCTGCCACCGCCGTCTCAGTACCCG 847
| ||| | |||||||||||||||||||| |||||| ||| || | | || |||| ||||
Sbjct 716 CTGAAGTTGACCCGAGAACCAACCGTCTTAAGAAACCTG-CA--G-C-TC-CAGTCCCCG 769
Query 848 CCGGATCTCCACCAG-TGCTTCCGATTGAATCCGCTATGGCTCCAGGTCCATCGCTAGCT 906
||||||||||||| | | |||||||| ||||||| |||||||| |||||||||||||||
Sbjct 770 CCGGATCTCCACCGGCT-CTTCCGATCCAATCCGCCATGGCTCCTGGTCCATCGCTAGCT 828
Query 907 CCGGCTCCGGCTCCAGGACCTGGAGGTGC-A-CA-CAAACATTTCAACGGCGATGCTCAG 963
||||| || ||||| ||||||||| | || | || | | || ||| |||| || |||||
Sbjct 829 CCGGCACCAGCTCCGGGACCTGGA-G-GCAAGCAGC-ACCACTTCGACGGTGAAGCTCAA 885
Query 964 GTCAAAGATTTCATCCACACATTGTTACATTACGGTGGATACAACGAAATGGCGGATATT 1023
||||||||||||||||||||| ||||||||||||| || |||||||| |||||||| |||
Sbjct 886 GTCAAAGATTTCATCCACACACTGTTACATTACGGCGGTTACAACGAGATGGCGGACATT 945
Query 1024 CTCGTGAATCTGACGTCACTTGCGACGGAGATGGGTCGATTGGTGTCAGAAGGTTACGTC 1083
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct 946 CTCGTGAATCTGACGTCACTCGCGACGGAGATGGGTCGCTTGGTGTCAGAAGGCTATGTG 1005
Query 1084 CTCACCG-TGTTAGCTCCGAACGATGAAGCTATGGGGAAATTAACGACTGATCAGCTT-A 1141
| || | | || ||||| ||||| || ||||||| |||| | ||||| |||||| || |
Sbjct 1006 TTGACGGTTCTT-GCTCCTAACGACGACGCTATGGCGAAACTGACGACGGATCAG-TTGA 1063
Query 1142 GCGAGCCCGGAGCTCCGGAGCAAATTATGTATTACCACATTATTCCAGAGTATCAGACGG 1201
| ||||| ||||| |||||||| ||| |||||||||| ||||| || |||||||| ||||
Sbjct 1064 GTGAGCCAGGAGCACCGGAGCAGATTGTGTATTACCATATTATCCCTGAGTATCAAACGG 1123
Query 1202 AGGAAAGCATGTATAATTCTGTTAGGAGATTTGGGAAGGTGAAGTATGAAACGCTGCGTT 1261
|||| || ||||| ||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 1124 AGGAGAGTATGTACAATTCTGTTAGGAGATTTGGGAAGGTGAAGTTTGATACGCTGCGCT 1183
Query 1262 TTCCTCACAAGGTTGGGGCTAAAGAAGCTGATGGCTCGGTTAAATTCGGTT-CTGGTGAC 1320
||||||| ||||||| |||||| |||||||| || |||||||| || ||| | |||||
Sbjct 1184 TTCCTCATAAGGTTGCGGCTAAGGAAGCTGACGGTTCGGTTAAGTTTGGTGAC-GGTGAA 1242
Query 1321 CGGTCGGCTTATTTGTTTGATCCGGATATTTACACCGATGGTCGCATTTCGGTTCAGGGG 1380
||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| |||
Sbjct 1243 AAGTCAGCGTATTTGTTCGATCCTGATATTTATACCGATGGTCGAATTTCGGTTCAAGGG 1302
Query 1381 ATTGATGGTGTTTTGTTCCCAGAGGAGAAGGAAGAA-GA-GA--CGGTTAAGAAACCGAC 1436
|||||||||||||||||||| | ||| |||| || | || ||||||||||||||
Sbjct 1303 ATTGATGGTGTTTTGTTCCCTCAAGAGGAGGA-GATTGTTGAATCGGTTAAGAAACCG-- 1359
Query 1437 CGGTCCGGTTAAGAAAGTTGTTCAGCCGAGAAGAGGGAAGTTGCTGGAAGTAGCATGTAG 1496
| | | ||||||||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct 1360 -G-T----T-AAGAAAGTTGTTCAGCCGAGAAGAGGGAAATTGTTGGAAGTAGCCTGTAG 1412
Query 1497 TATGCTTGGAGCTATTGGGAAGGACTCATATCTAAGCAGATGCTGATGAATTCACAAACC 1556
|||||||| ||| |||| ||||| | ||||| |||| |||| | ||||||| ||||||
Sbjct 1413 CATGCTTGGTGCTTTTGGCAAGGAAACTTATCTCAGCAAATGCCGGTGAATTCGCAAACC 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74047436280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5