BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11710.1
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478516 jgi|Araly1|478516|fgenesh2_kg.3__1217__AT3G11710.1 3118 0.0
Ahg899041 jgi|Araly1|899041|Al_scaffold_0005_3007 1123 0.0
> Ahg478516 jgi|Araly1|478516|fgenesh2_kg.3__1217__AT3G11710.1
Length=2096
Score = 3118 bits (1688), Expect = 0.0
Identities = 1971/2106 (94%), Gaps = 26/2106 (1%)
Strand=Plus/Plus
Query 38 AAACTTGAAACAACAATCTGAGCAAAGAGCGTTTTATCTTGTTGATTTTGGAA--T-CTC 94
|||||||||||||||||||||| ||||||||||||||||||||||||||| || | |||
Sbjct 2 AAACTTGAAACAACAATCTGAGAAAAGAGCGTTTTATCTTGTTGATTTTGAAATCTCCTC 61
Query 95 CATTACGATGGAAGGTGCGGCTGATCAAACTACGAAAGCGTTATCTGAATTAGCCATGGA 154
|| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CAAAACGATGGAAGGTTCAGCTGATCAAACTACGAAAGCGTTATCTGAATTAGCCATGGA 121
Query 155 TTCTTCTACCACCTTGAATGCTGCTGAGTCTAGCGCTGGTGATGGAGCTGGACCTCGGAG 214
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 122 TTCTTCTACCACCTCGAATGCTGCTGAGTCTAGCGCTGGTGATGCAGCTGGACCTCGGAG 181
Query 215 TAAAAATGCTTTgaagaaggaacagaaaatgaagcagaaagaggaagagaagagacgaaa 274
|||||||||| ||||||||||| |||| ||||||||||||||| | || |||| ||||
Sbjct 182 TAAAAATGCTCAGAAGAAGGAACTGAAATTGAAGCAGAAAGAGG-A-AG-AGAG--GAAA 236
Query 275 ggacgaagagaaagctgaaaagGCTAAACAAGCACCTAAAGCAAGCT--C----CCAGAA 328
| | ||| | ||| || |||||||||||||| || |||| ||||| | ||||||
Sbjct 237 CG-C-AAG-G-AAGAAGAGAAGGCTAAACAAGCTCCGAAAGTAAGCTCCCAGAGCCAGAA 292
Query 329 GGCAGTGGCAGCAGATGATGAAGAGATGGATGCAACGCAATACTATGAGAACAGATTGAA 388
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 293 GGCAGTGGCAGCAGATGATGAAGAGATGGATGCAACGCAATACCATGAGAACAGATTGAA 352
Query 389 ATATCTTGCGGCTGAGAAGGCTAAAGGGGAGAATCCATATCCTCACAAGTTCGCTGTGTC 448
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 353 ATATCTTGCGGCTGAGAAGGCTAAAGGGGAGAATCCATACCCTCACAAGTTCTCTGTGTC 412
Query 449 AATGTCGATTCCTAAATACATTGAGACGTATGGTAGTTTGAACAATGGAGATCATGTTGA 508
|||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 413 AATGTCCATTCCTGAATACATTGAGAAGTATGGTAGTTTAAACAATGGAGATCATGTTGA 472
Query 509 AAACGCTGAGGAGTCTTTAGCTGGGCGGATAATGAGCAAGCGATCTTCCTCTTCCAAGCT 568
| ||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AGACGCTAATGAATCTCTAGCTGGGCGGATAATGAGCAAGCGATCTTCCTCTTCCAAGCT 532
Query 569 CTTCTTCTATGATCTACACGGTGATGATTTCAAGGTCCAAGTCATGGCTGATGCAAGTAA 628
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTTCTTCTATGATCTACATGGTGATGATTTCAAGGTCCAAGTCATGGCTGATGCAAGTAA 592
Query 629 GTCAGGATTGGATGAAGCTGAGTTCTTAAAGCTCCATTCGAATGCT-AAGCGTGGTGATA 687
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 593 GTCAGGATTGGATGAAGCTGAGTTCTTAAAGCTCCATTCGAATG-TCAAGCGTGGTGATA 651
Query 688 TTGTTGGAGTCATTGGGTTTCCAGGAAAAACTAAGAGGGGAGAATTGAGTATCTTTCCCC 747
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTGTTGGAGTCACTGGGTTTCCAGGAAAAACTAAGAGGGGAGAATTGAGTATCTTTCCCC 711
Query 748 GATCATTTATTCTTCTGTCCCATTGCCTCCACATGATGCCGAGAAAGGCTGATAATGTTA 807
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GATCATTTATCCTTCTGTCCCATTGCCTCCACATGATGCCGAGAAAGGCTGATAATGTTA 771
Query 808 ATGCAAAGAAACCTGAAATCTGGGTTCCAGGTCAAACGAGAAATCCTGAAGCATATGTTC 867
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 772 ATGCAAAGAAACCTGAAATCTGGGTTCCAGGTGAAACGAGAAATCCTGAAGCATATGTTC 831
Query 868 TGAAAGACCAGGAATCAAGATATCGTCAGCGTCATCTTGATATGATTTTGAACGTGGAGG 927
||||||| ||||||||||||||||| |||||| |||||||| |||| |||||||||||||
Sbjct 832 TGAAAGATCAGGAATCAAGATATCGCCAGCGTTATCTTGATCTGATGTTGAACGTGGAGG 891
Query 928 TTCGTCAGATATTCAGGACTAGAGCTAAAATCATCTCCTATGTCCGCAGATTCCTCGACA 987
||||||||||||||| ||| |||||| | ||||||||||| ||||||||||||||||||
Sbjct 892 TTCGTCAGATATTCAAGACCAGAGCTCATATCATCTCCTACATCCGCAGATTCCTCGACA 951
Query 988 ACAAAAATTTCTTGGAGGTCGAGACACCTATGATGAACATGATTGCTGGTGGAGCAGCTG 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 952 ACAAAAATTTCTTGGAGGTCGAGACACCTATGATGAACATGATTGCTGGTGGTGCAGCTG 1011
Query 1048 CTAGACCTTTTGTGACACATCACAATGATCTAGATATGAGGCTGTACATGCGAATCGCAC 1107
|| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1012 CTCGACCATTTGTGACACATCACAATGATCTAGATATGAGGCTGTACATGCGTATCGCAC 1071
Query 1108 CTGAACTCTATCTCAAGCAACTTATTGTTGGTGGCTTGGAACGTGTTTACGAGATAGGAA 1167
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1072 CTGAACTCTTTCTCAAGCAACTTATAGTTGGTGGCTTGGAACGTGTTTACGAGATAGGAA 1131
Query 1168 AGCAATTCAGAAACGAGGGTATAGACCTGACCCACAATCCGGAGTTCACCACTTGCGAGT 1227
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1132 AGCAATTCAGAAACGAGGGTATTGACCTGACCCACAATCCGGAGTTCACCACTTGCGAGT 1191
Query 1228 TCTATATGGCTTTTGCAGACTACAATGACCTGATGGAA-ATGACTGAGGTTATGTTGAGT 1286
|||||||||| || |||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 1192 TCTATATGGCCTTCGCAGACTACAATGACCTGAT-GAAGATGACTGAGGATATGTTGAGT 1250
Query 1287 GGCATGGTTAAGGAATTAACAGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGAC 1346
|||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1251 GGCATGGTCAAGGAGTTAACAGGTGGTTATAAAATCAAGTATCATGCTAATGGGTATGAT 1310
Query 1347 AAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGGAGGATTGAGATGATAGGAGAG 1406
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1311 AAGGATCCAATTGAAATCGACTTCAAGCCACCATTCAGGAGGATTGAGATGATAGGAGAG 1370
Query 1407 TTAGAGAAGGTTGCTAAGCTCAATATACCAAAAGACTTGGCTAGCGAAGAAGCTAACAAG 1466
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TTGGAGAAGGTGGCTAACCTCAATATACCAAAAGACTTGGCTAGCGAAGAAGCTAACAAG 1430
Query 1467 TATCTGATTGATGCATGTGCGAGGTTTGATGTCAAATGCCCTCCTCCTCAGACAACAGCT 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 TATCTGATTGATGCATGTGCGAGGTTTGATGTCAAATGCCCTCCTCCTCAGACAACAGCT 1490
Query 1527 CGTCTGTTAGATAAACTTGTTGGAGAATTTCTGGAACCGACATGTGTGAACCCAACTTTC 1586
||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1491 CGTTTGTTGGATAAACTTGTTGGAGAGTTTCTGGAAGTGACATGTGTGAACCCAACTTTC 1550
Query 1587 ATCATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAAGAGTGGA 1646
||||||||||| || |||||||||||||| ||||| ||||||||||||||||| | ||
Sbjct 1551 ATCATCAACCATCCTGAGATCATGAGTCCATTGGCAAAATGGCACAGATCGAACAATGTT 1610
Query 1647 TTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAACTCTGCAATGCCTACACGGAG 1706
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1611 TTGACAGAGAGATTTGAGCTGTTCATCAACAAACATGAACTCTGCAACGCCTACACGGAG 1670
Query 1707 CTAAACGATCCTGTGGTACAGCGCCAGCGTTTTGCTGATCAGCTCAAGGATCGACAGTCT 1766
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1671 CTGAACGATCCTGTGGTACAGCGCCAGCGTTTTGCTGATCAGCTCAAGGATCGACAATCT 1730
Query 1767 GGAGACGATGAAGCGATGGCTTTAGATGAAACATTTTGTAATGCTTTAGAATATGGGTTG 1826
||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1731 GGAGATGATGAAGCGATGGCTTTAGATGAGACATTTTGTAGTGCTTTAGAATATGGGTTG 1790
Query 1827 GCTCCTACAGGTGGCTGGGGATTAGGAATAGACAGACTCT-CTATGCTTTTGACCGACTC 1885
||||| |||||||| |||||||| || ||||||||||| | |||||||||| || |||||
Sbjct 1791 GCTCCAACAGGTGGTTGGGGATTGGGTATAGACAGACT-TGCTATGCTTTTCACTGACTC 1849
Query 1886 ACTGAACATCAAGGAGGTTCTTTTCTTCCCGGCAATGAGGCCACCACAGGAGGAGTCAGC 1945
|| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 1850 ACAGAACATCAAGGAGGTTATTCTCTTCCCGGCAATGAGGCCACCACAGGACGAGTCAGT 1909
Query 1946 AGCCGCTCAAGCTCCTTTAACAGAAGAGAAGAAATAAGGAG--TCTACACAAGTTTTCTG 2003
|||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 1910 AGCCCCTAAAGCTCCTTTAACAGAAGAGAAGAAATAAGGAGAGTCTGCACAAGTTTTCAG 1969
Query 2004 ACTAAGCTTAGTCAATTCGCTATTATGCACTCTGTTCTCAAGTTACTTGTAATTGCAGAC 2063
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 ACTAAGCTTAGTCAATTGGCTATTATGCACTCTGTTCTCAAGTTACTTGTAATTGCAGAC 2029
Query 2064 CATATTTTTCaaaaaaaaaaTACCAATTAATTATTATCAAAAACCTTTGTAAGACTTTTT 2123
|||| |||||||||| | ||||||||| |||| |||||||||||||||||||||||||
Sbjct 2030 CATAATTTTCAAAAATTATTTACCAATTAGTTATGATCAAAAACCTTTGTAAGACTTTTT 2089
Query 2124 TGCAAT 2129
||||||
Sbjct 2090 TGCAAT 2095
> Ahg899041 jgi|Araly1|899041|Al_scaffold_0005_3007
Length=1623
Score = 1123 bits (608), Expect = 0.0
Identities = 1289/1608 (80%), Gaps = 86/1608 (5%)
Strand=Plus/Plus
Query 354 ATGGATGCAACGCAATACTATGAGAACAGATTGAAATATCTTGCGGCTGAGAAGGCTAAA 413
||||| |||| |||||| | |||||||||||||| |||||||| || |||| |||
Sbjct 1 ATGGAGGCAAAGCAATATTTTGAGAACAGATTGATGTATCTTGCAGCAAAGAA-AAAAAA 59
Query 414 GGG-GAGAATCCATATCCTCACAAGTTCGCT-GTGTCAATGTCGATTC-CTAAATACATT 470
||| ||||||||||| || |||||||| | || || ||||| | || || ||| ||||
Sbjct 60 GGGAGAGAATCCATACCCACACAAGTT-TTTAGTTTCCATGTC-AATCTCTGAATTCATT 117
Query 471 GAGACGTATGGTAGTTTGAA-CAATGGAGATCATGTTGAAAACG-CTGAGGAGTCTTTAG 528
|| | |||| || ||| || ||| ||||| ||||||||| ||| | | | ||| |||
Sbjct 118 GAAAAGTATACTACTTT-AAGCAACGGAGACCATGTTGAAGACGAC-CAAGTTTCTCTAG 175
Query 529 CTGGGCGGATAATGAGCAAGCGATCTTCCTCTTCCAAGCTCTTCTTCTATGATCTACACG 588
|||| ||||||||||||| | ||||||||||| |||||| |||||||||||| ||||
Sbjct 176 CTGGACGGATAATGAGCAGGAGATCTTCCTCTAGCAAGCTTTTCTTCTATGATTTACA-- 233
Query 589 GTGA-TG-ATTTC-AAGGTCCAAGTCATGGCTGATGCAAGTAAGTCAGGATTGGATGAAG 645
| | || | ||| | ||||||||| | | ||||||||||||||||| ||| |||||||
Sbjct 234 -TAATTGTAGTTCTAGGGTCCAAGTTACAGTTGATGCAAGTAAGTCAGAATTAGATGAAG 292
Query 646 CTGAGTTCTTA--AAGCTCCATTCGAATGCTAAGCGTGGTGATATTGTTGGAGTCATTGG 703
||||| | ||| | | ||||| | |||| ||||| ||| |||||||| || ||| |||
Sbjct 293 CTGAG-T-TTACGAGGGTCCATGCTAATGTTAAGCATGGAGATATTGTCGGTTTCACTGG 350
Query 704 GTTTCCAGGAAAAACTAAGAGGGGAGAATTGAGTATCTTTCCC-CGATCATTTATTCT-T 761
||||||||||||||||| |||||||| | |||||| ||||| ||||| |||| | | |
Sbjct 351 ATTTCCAGGAAAAACTAAAAGGGGAGAGCTAAGTATC-TTCCCACGATCGTTTACTGTGT 409
Query 762 CTGTCCCATTGCCTCCACATGATGCCGAGAAAGGCTGA-TAATGTTAATGCAAAGAAACC 820
|||| ||||||||||||||| || | | |||| || | | || | || || ||
Sbjct 410 -TGTCTCATTGCCTCCACATGTTG-C-A-AAAGCCT-AGTCCTGGTCTTG---AG---CC 458
Query 821 TGAAATCTGGGTTCCAGGTCAAA--CGAGAAATCCTGAAGCATATGTTCTGAAAGACCAG 878
| || |||||||||||| ||| | |||| ||| ||| | ||| |||| ||||| |||
Sbjct 459 T--AA-CTGGGTTCCAGG--AAAGCCTAGAACTCCAGAAACTTATATTCTTAAAGATCAG 513
Query 879 G-AA-TCAAGATATCGTCAGCGTCATCTTGA-TATGATTTTGAACG-TGGAGGTTC-GTC 933
| || || | ||||| |||||| | ||||| | |||| |||||| | |||| || | |
Sbjct 514 GAAATTC--GGTATCGCCAGCGTTACCTTGACT-TGATGCTGAACGAT-GAGG-TCTGCC 568
Query 934 AGATATTCAGGACTAGAGCTAAAATCATCTCCTATGTCCGCAGATTCCTCGA-CAACAAA 992
||||||||| ||| | | |||| || ||| || | | |||| ||| || | |
Sbjct 569 AGATATTCATGACCAAAACTAAGATAATCAAATACATTAGAAGATACCTTGATGATC-TT 627
Query 993 AATTTCTTGGAGGTCGAGACACCTATGATGAACATGATTGCTGGTGGAGCAGCTGCTA-G 1051
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 628 GATTTCTTGGAGGTTGAGACACCTATGATGAGTATGATTGCTGGTGGAGCAGCTGC-ACG 686
Query 1052 ACCTTTTGTGACACATCACAATGATCTAG-ATATGAGGCTGTACATGCGAATCGCACCTG 1110
| |||| ||| |||||||||||| | | |||||| | ||| |||||| ||| |||| |
Sbjct 687 TCGATTTGCGACCCATCACAATGATAT-GAATATGAAGATGTTCATGCGTATCACACCAG 745
Query 1111 AACTCTATCTCAAGCAACTTATTGTTGGTGGCTTGGAACGTGTTTACGAGATAGGAAAGC 1170
|||||||||| ||||| ||| ||||||| || || || ||||||||||||||||||||||
Sbjct 746 AACTCTATCTTAAGCAGCTTGTTGTTGGCGGTTTTGAGCGTGTTTACGAGATAGGAAAGC 805
Query 1171 AATTCAGAAACGAGGGTATAGACCTGACCCACAATCCGGAGTTCACCACTTGCGAGTTCT 1230
| |||||||| |||||||| ||| |||| |||||||| ||||||||||| ||||||||||
Sbjct 806 AGTTCAGAAATGAGGGTATTGACTTGACACACAATCCAGAGTTCACCACCTGCGAGTTCT 865
Query 1231 ATATGGCTTTTGCAGACTACAATGACCTGATGGAAATGACTGAGGTTA-TGTTGAGTGGC 1289
|||||||||| ||||||||||||||| ||||||| ||| |||| | | || | |||||
Sbjct 866 ATATGGCTTTCGCAGACTACAATGACTTGATGGAGATGTCTGA-GAAATTGCTCAGTGGT 924
Query 1290 ATGGTTAAGGAATTAACAGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGACAAG 1349
||||| |||||||||||||| || ||||||||||| || | |||||||||||||| |||
Sbjct 925 ATGGTGAAGGAATTAACAGGGGGCTATAAAATCAAATACCACGCTAATGGGTATGATAAG 984
Query 1350 GATCCAATTGAAATCGACTTTACTCCACCATTCAGGAGGATTGAGATGATAGG-AGAGTT 1408
|| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct 985 GAGCCAATTGAAATCGACTTCACTCCTCCATTCAGGAGGATTGAGATGAT-GGTAGAGTT 1043
Query 1409 AGAGAAGGTTGCTAAGCTCAATATACCAAAAGACTTGGCTAGC-GAAGAAGCTAACAAGT 1467
||| ||||| || || || |||||||||||||| ||||||||| | |||||||||||||
Sbjct 1044 AGACAAGGTGGCCAACCTTAATATACCAAAAGATTTGGCTAGCTG-GGAAGCTAACAAGT 1102
Query 1468 ATCTGATTGATGCATGTGCGAGGTTTGATGTCAAATGCCCTCCTCCTCAGACAACAGCTC 1527
|||||||||||||||||| |||||||||||||| |||||| |||||| | || |||||||
Sbjct 1103 ATCTGATTGATGCATGTGAGAGGTTTGATGTCACATGCCCACCTCCTAAAACGACAGCTC 1162
Query 1528 GTCTGTTAGATAAACTTGTTGGAGAATTTCTGGAACCGACATGTGTGAACCCAACTTTCA 1587
|| ||||||| |||||||||||| | ||||||||| ||| ||||| ||||| |||||||
Sbjct 1163 GTTTGTTAGAGAAACTTGTTGGACACTTTCTGGAAGTGACGTGTGTTAACCCCACTTTCA 1222
Query 1588 TCATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAA-GAGTGGA 1646
| || ||||| ||| |||| |||||||| ||||| ||||| |||||||| || ||||
Sbjct 1223 TAATGAACCAACCCAAGATTATGAGTCCATTGGCAAAATGTCACAGATCCAACGAGTTCC 1282
Query 1647 TTGACAGAGA-GATTCGAGCTGTTCATCAACAAACATGAACTCTGCAATGCCTACACGGA 1705
| ||| || | |||| ||| ||||| ||||| |||| ||||| |||||||||||||| ||
Sbjct 1283 T-GACTGA-ACGATTTGAGTTGTTCGTCAACCAACACGAACTTTGCAATGCCTACACTGA 1340
Query 1706 GCTAAACGATCCTGTGGTACAGCGCCAGCGTTTTGCTGATCAGCTCAAGGATCGAC-AGT 1764
| | || |||||||||| |||||| ||||| ||||||||||||||||||||||||| | |
Sbjct 1341 GTTGAATGATCCTGTGGAACAGCGGCAGCGCTTTGCTGATCAGCTCAAGGATCGACGA-T 1399
Query 1765 CTGGAGACGATGAAGCGATGGCTTTAGATGAAACATTTTGTAATGCT-TTAGAATATGGG 1823
|||||| |||||||| |||| | || || | ||||| | ||| || ||| ||||
Sbjct 1400 ATGGAGATGATGAAGCTATGGAT---GA-GA--CGTTTTGCACGGCTCTT-GAACATGGA 1452
Query 1824 TTGGCTCCTACAGGTGGCTGGGG-ATTAGGAATAGACAGACTCTCT-ATGCTT--TTGAC 1879
|| ||||||||||||| ||||| || ||||||||||| || | | ||| || || ||
Sbjct 1453 CTGCCTCCTACAGGTGGTTGGGGTATG-GGAATAGACAGGCT-TGTTATG-TTGCTT-AC 1508
Query 1880 CGACTCACTGAACATCAAGGAGGTTCTTTTCTTCCCGGCAATGAGGCC 1927
|||||||| |||||| ||||||||||| ||||||| |||||| |||
Sbjct 1509 CGACTCACAGAACATTAAGGAGGTTCTCCTCTTCCCAACAATGAAGCC 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81741665770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5