BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11720.3
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478517 jgi|Araly1|478517|fgenesh2_kg.3__1218__AT3G11720.1 2477 0.0
> Ahg478517 jgi|Araly1|478517|fgenesh2_kg.3__1218__AT3G11720.1
Length=1925
Score = 2477 bits (1341), Expect = 0.0
Identities = 1628/1760 (93%), Gaps = 46/1760 (3%)
Strand=Plus/Plus
Query 140 GGTG-TCTGCTGATTCAATTGAGTATGGAGAAGAAACGAGATGTTTCTGAGTACAGAGAG 198
|||| ||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 154 GGTGTTCT-CTGATTCAATTGAGTATGGAGAAGAATCGAGAGGTTTCGGAGTACAGAGAG 212
Query 199 AGACTTAATGAGACCTTGTCGTCTCCTGAGCTCATTAATGAGCAAACTCTTAAAACCCTA 258
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 213 AGACTTAATGAGACCTTGTCGTCTCCTGAGCTCGTTAATGAGCAAACTCTTAAAACTCTA 272
Query 259 GTCAGAAAACAACTCAATGAAGAGTGTAGTGTTGATATATTGGATCAAAGAGTAGCTGCT 318
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GTCAGAAAACAGCTCAATGAAGAGTGTAGTGTTGATATATTGGATCAAAGAGTAGCTGCT 332
Query 319 TTATCCAGTACAATTGAGAAGCTTAGGAGTGTATCAACAAAGGATCAAGACTTGTCTAAA 378
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 333 TTATCCAGTACAATTGAGAAGCTTAGGAGTGTATCAACAAAGGATCACGACTCGTCTAAA 392
Query 379 TCAAGCACCGAGGCATCTTATGGTGATTGGAAAGTGAAACATGATGATAAAGATTGTCGT 438
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 393 TCAAACAACGAGGCATCTTATGGTGATTGGAAAGTGAAACATGATGATGAAGATTGTCGT 452
Query 439 GTTATGTACCGTGAAGGACTTAAAGGAAGTCCATTTCATACATTGCTCGTTGAAGGTTGC 498
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 453 GTTATGTACCGTGAAGGACTTAAAGGAAGTCCATTTCATACATTGCTAGTTGAAGGCTGC 512
Query 499 ACTGATGGGACTATCGAAGACTGTTTATGTGTATGCTGGGAATCATCATTCTATGAGAAA 558
| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 513 ATTGATGGGACTATTGAAGACTGTTTATGTGTATGCTGGGAATCATCATTGTATGAGAAA 572
Query 559 TGGTGGCCAAAGTTGACATTTCCGTCATTCAGGGTCTTAGAAGCTAAATGCTTGCAAAAG 618
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 573 TGGTGGCCAAAGTTGACATTTCCGTCATTCAGAGTCTTAGAAGCTAAATGCTTGCAAAAT 632
Query 619 TTTAGGATTGATGAACAGATATGTTTACTGAGGGTGAAAGCACCGTGGCCACTGACAGAC 678
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 633 TTTAGGATTGATGAACAGATATGTTTACTAAGGGTGAAAGCACCGTGGCCATTGACAGAC 692
Query 679 AGAGAAGCTGTTCTGCAGTTTTTCGTATTCGAATACTTTAAAGATGATTTAGTCATCATC 738
||||||||| ||||||||| |||| ||||||||||||||||||| | |||||||||||||
Sbjct 693 AGAGAAGCTATTCTGCAGTATTTCTTATTCGAATACTTTAAAGACGGTTTAGTCATCATC 752
Query 739 CTACTTAACTCGATCGAAGTGGAGAGCGGCAGTGTAGCTGAAGT-G--AATGCGGTGAGG 795
||||| |||||| | ||| |||||| | || |||||||||| | ||||| |||||
Sbjct 753 CTACTAAACTCGGTAAAAG---AGAGCGACGGTATAGCTGAAGTAGTGAATGCTGTGAGA 809
Query 796 ATTGACTTCGTAGGCGGAGTTGCGATACAAAAAGTGACTCCAGAGAAGAGTTACATAAGA 855
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 810 ATTGACTTCGTAGGCGGAGTTGCGATACAAAAAGTGACTCCGGAGAGGAGTTACCTAAGA 869
Query 856 TTTATAGCGGAAGTGGATATAAAGCTGGACTTGGTTCCTCCATCTCTTATTAATTTTATG 915
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 870 TTTATAGCGGAAGTGGACATAAAGCTGGACTTGGTACCTCCATCTCTTATTAATTTTATG 929
Query 916 TCTAGGCAGCTTCTTGGTAACGGTTTCAAACTTTTCAAGAAGACTATTGGTTCGGTGGCT 975
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 930 TCTAGGCAGCTTCTTGGCAACGGTTTCAAACTTTTCAAGAAGACTATTGGTTCAGTGGCT 989
Query 976 GAATCCGATGATTACAAGACAGTTTTAGCTGATCCATTGTATACTCATATACGTGAAGCT 1035
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 990 GAATCCGATGATTACAAGAGAGTTTTAGCTGATCCATTGTATACTCATATACATGAAGCT 1049
Query 1036 CTGTATTCTAGTGATAAAACTGATGAAATCTGCCAAGTAAATGAGCTTCATAGCCAACAA 1095
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1050 CTGTATTCTAGTGATAAAACTAATGAAATCTGCCAAGTAAATGAGCTTCATAGCCAACAA 1109
Query 1096 GGAAGAGATTGTGAAGAGA-AAGAACC-CAAGTTGGAAGCTGATGATG-ATAT--GGAAA 1150
||||||||||||||||| | ||||||| || ||||||||||||||| |||| || ||
Sbjct 1110 GGAAGAGATTGTGAAGA-ACAAGAACCGCA-GTTGGAAGCTGATGACCCATATATGGCAA 1167
Query 1151 AAGAGAATGAGACTCGAGACTGCGAGAATGAATCTGTACCTTGCAAAAGAGATGTTCCTG 1210
|||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1168 AAGAGAATGAGACTCGCCATTGCGAAAATGAATCTGTACCTAGCAAAAGAGATGTTCCTG 1227
Query 1211 AGATCGAGGAAGAAGAATGTGTTGATGATTTAAAGGAAGAA-AACAAAAGTTCTCcttct 1269
||||||||||||||||||||| |||| | |||| ||||| || |||||||||| ||||
Sbjct 1228 AGATCGAGGAAGAAGAATGTGCTGATC-TG-AAAG-AAGAAGAA-AAAAGTTCTCTTTCT 1283
Query 1270 tcttcttcttcttcttcttcttcttctGAGGATGAAGACAAGAATGGCAAAACACGTTTC 1329
|||| |||||||||||||||||| ||||||||| ||||||| | |||||||||||||
Sbjct 1284 TCTTTTTCTTCTTCTTCTTCTTCAGAGGAGGATGAAAACAAGAAAGTCAAAACACGTTTC 1343
Query 1330 TGCATAAGTCCGGAGGTGAAGCAAGCTTTAGGGACATTAGAGAGAGTAATATCAATGGTT 1389
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 TGCATAAGTCCAGAGGTGAAGCAAGCTTTAGGGACATTAGAGAGAGTAATATCAATGGTT 1403
Query 1390 AGAAAATCCAAAACAGATAATAATAATACATCAACCTCTTC-GG--A-G--GAAGAAGAA 1443
||||||||||||||||||||||||||||||||||||||||| || | | |||||||||
Sbjct 1404 AGAAAATCCAAAACAGATAATAATAATACATCAACCTCTTCCGGTGAAGAAGAAGAAGAA 1463
Query 1444 GAAGAAGCATCATCATC-TC-CAA-TGCAGCATTCAGGGAGCACTCAGATTGTTTCTAGT 1500
||||||| | ||||||| || ||| |||| |||||||||||||| |||| |||||||| |
Sbjct 1464 GAAGAAGAAGCATCATCATCACAAATGCATCATTCAGGGAGCACACAGACTGTTTCTAAT 1523
Query 1501 AGCAAAGTTTGTATTCAAGATCCTAACACTGAACTTCTCGATGAAGCATCCTTTGCACAT 1560
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1524 AGCAAAGTTTGTATTCAAGATCCTAAAACTGAACTTCTTGATGAAGCATCCTTCGCACAT 1583
Query 1561 TATCACAACA------GCAACAAAATAGCTCCTGCATCACCCGAGATCGATCTTACAACA 1614
|||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1584 TATCACAACAACAACAGCAACAAAATAGCTCCTGCATCACCCGATATCGATCTAACAACA 1643
Query 1615 AACTCTGAGGTAACAAGGATAACAGTCTCGCAAGCAACAAATCTTTTCTGCCAAACAACA 1674
||||||||||||||||| ||||||||||| ||||| |||| ||||||| |||||||||||
Sbjct 1644 AACTCTGAGGTAACAAGAATAACAGTCTCACAAGCCACAACTCTTTTCAGCCAAACAACA 1703
Query 1675 GAGAATAGTGACGACAATTACAAACCGAGCGGTTTAAACGGAGGTAAGAGCTCAAATCTG 1734
||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||
Sbjct 1704 GAGAATAGTGACGACAA--AC---C-GAGTGGTTTAAACGGAGGTAAGAGCTCAAATCTG 1757
Query 1735 CAGAGGAAACGTAAACCGAGCTGCTTTGGTTTCAGGTTTTGGAGAAGAAGGACTTGAAAT 1794
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 CAGAGGAAACGTAACCCGAGCTGCTTTGGTTTCAGGTTTTGGAGAAGAAGGACTTGAAAT 1817
Query 1795 -TGTCATTGGTAAATCCAAATATTTTGTCTCTTTGAAGTTGCAGATCAT-TATATA--CA 1850
|| |||||||||||||||| ||||||| ||||||||||||||||| || |||||| ||
Sbjct 1818 ATG-CATTGGTAAATCCAAAGATTTTGTTTCTTTGAAGTTGCAGATTATATATATATACA 1876
Query 1851 AGGAAACATAGTGTTAAGAT 1870
||||||||||||||||||||
Sbjct 1877 AGGAAACATAGTGTTAAGAT 1896
Score = 147 bits (79), Expect = 4e-34
Identities = 89/94 (95%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 49 TATTCCCGAGAAAATGAGGGAAAGTATCTTCTAATCGGGAAAAACATCTCCACGTTCCTT 108
||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1 TATTCCCAAGAAAATGAGAGAAAGTATCTTCTAATCGGGAAAGACATCTCCACGTTCTTT 60
Query 109 GCCCGTCTCGTAGGTTACGCATCAGCAGCTGGGT 142
||||| ||||||||||||||||||||||||||||
Sbjct 61 GCCCGCCTCGTAGGTTACGCATCAGCAGCTGGGT 94
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70238411780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5