BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11730.1
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478519 jgi|Araly1|478519|fgenesh2_kg.3__1220__AT3G11730.1 1186 0.0
Ahg494258 jgi|Araly1|494258|fgenesh2_kg.8__74__AT5G47200.1 259 2e-68
> Ahg478519 jgi|Araly1|478519|fgenesh2_kg.3__1220__AT3G11730.1
Length=813
Score = 1186 bits (642), Expect = 0.0
Identities = 767/824 (93%), Gaps = 22/824 (3%)
Strand=Plus/Plus
Query 102 AAATCTCGGAAACGCAG---T---CTTCAGCTAAATCATGAGCAACGAGTACGATTATCT 155
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCTCGGAAACGCAGTCTTCAGCTTCAGCTAAATCATGAGCAACGAGTACGATTATCT 60
Query 156 GTTCAAGCTTTTGTTGATCGGTGACTCCTCTGTTGGAAAATCGTGTCTTCTTCTCCGATT 215
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 61 GTTCAAGCTTTTGTTGATCGGTGACTCCTCTGTTGGAAAATCATGCCTTCTTCTTCGATT 120
Query 216 CGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTCAAAATTAG 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTCAAAATTAG 180
Query 276 GACGATTGAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGCTGGACAGGA 335
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACGATTGAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGCTGGACAGGA 240
Query 336 GCGTTTCAGGACCATCACTAGCAGCTATTACAGAGGAGCTCATGGAATCATTATTGTTTA 395
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 241 GCGTTTCAGGACCATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCATTATTGTGTA 300
Query 396 TGACTGTACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGTGAGATCGATAG 455
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGATTGTACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGTGAGATCGATAG 360
Query 456 ATATGCCAATGAGAGTGTTTGCAAGCTTTTAATCGGTAACAAGAATGATATGGTTGAAAG 515
|||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 ATATGCTAATGAGAGTGTATGCAAGCTTCTAATCGGTAACAAGAATGATATGGTTGAAAA 420
Query 516 CAAAGTTGTTTCCACCGAAACTGGAAGGGCCTTAGCAGATGAGCTTGGAATTCCCTTTCT 575
|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 421 TAAAGTTGTTTCCACTGAAACTGGAAAGGCCTTAGCAGATGAGCTAGGAATTCCCTTTCT 480
Query 576 TGAGACCAGTGCCAAGGATTCTATTAACGTTGAACAGGCATTCTTAACTATTGCTGGCGA 635
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 481 TGAGACCAGTGCCAAGGATTCTATCAACGTCGAACAAGCATTCTTAACTATTGCCGGCGA 540
Query 636 GATAAAAAAGAAAATGGGAAGCCAAACGAATGCAAACAAGACATCTGGTCCTGGAACTGT 695
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATCAAGAAGAAAATGGGAAGCCAAACGAATGCAAACAAGACATCTGGTCCTGGAACTGT 600
Query 696 CCAAATGAAAGGTCAGCCAATCCAACAGAACAATGGCGGTTGCTGCGGTCAGTAGTTTAA 755
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAAATGAAAGGTCAGCCAATCCAACAGAACAATGGCGGTTGCTGCGGTCAGTAGTTTAA 660
Query 756 AAAATGTTTTAATCAAAACTATCTGAGACTCt-ttt-tttACTT--CC-TTTTTAACTAA 810
|||||||| || |||||||||||||||||||| ||| ||| || || |||||||||
Sbjct 661 AAAATGTTATA-TCAAAACTATCTGAGACTCTCTTTCTTTTTTTTTCCCTTTTTAACT-- 717
Query 811 GTGTTGTGAAAACCAATGGCTGTTTAAAACAACTAAGAAATGTAATATTCCATGTCGCTG 870
||||||||||||| |||| ||| || | || ||| ||||||||| |||||| |||
Sbjct 718 GTGTTGTGAAAACAAATGACTG---AA--CT--TA-GAACTGTAATATTTCATGTCACTG 769
Query 871 TGTCTTGAATAAGCTATGGTGTTAGTTGCAAGATACTTCTCTTT 914
|| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 770 TGGCTTGAATAAGCTATGGTGTTAGTTGCAAGATCCTTGTCTTT 813
> Ahg494258 jgi|Araly1|494258|fgenesh2_kg.8__74__AT5G47200.1
Length=887
Score = 259 bits (140), Expect = 2e-68
Identities = 347/447 (78%), Gaps = 14/447 (3%)
Strand=Plus/Plus
Query 151 TATCTGTTCAAGCTTTTG-TTGATCGGTGACTCCT-CTGTTGGAAAATCGTGTCTTCTTC 208
||||||||||||||| || || |||||||| | || |||||||||||| || || ||||
Sbjct 120 TATCTGTTCAAGCTTCTGCTT-ATCGGTGA-TTCTGGTGTTGGAAAATCATGCCTGCTTC 177
Query 209 TCCGATTCGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTCA 268
| |||| ||||||||| ||||| | || ||||||||||||||||||||||||||||| |
Sbjct 178 TAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTTA 237
Query 269 AAATTAGGACGATT-GAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGCT 327
|||| | || | | || ||||| || ||||| || || || || || ||||| || ||
Sbjct 238 AAATCCGCAC-AGTCGAACAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGCA 296
Query 328 GGACAGGAGCGTTTCAGGACCATCACTAGCAGCTATTACAGAGGAGCTCATGGAATCATT 387
|| || || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 297 GGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGAATCATT 356
Query 388 ATTGTTTATGACTGT-ACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGTGA 446
| |||||| ||| ||||| | || ||||||||||| || || || ||| ||| |||
Sbjct 357 GTCACTTATGA-TGTCACTGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAATGA 415
Query 447 GATCGATAGATATGCCAATGAGAGTGTTTGCAAGCTTTTAATCGGTAACAAGAATGATAT 506
||||| | || || | || | ||| |||||| | | || |||||||| ||| |
Sbjct 416 AATCGACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGAAACAAGAACGATCT 475
Query 507 GG-TTGAAAGCAAAGTTGTTTCCACCGAAACTGG-AAGGGCCTTAGCAGATGAGCTTGGA 564
|| | || |||||||| ||||| || || | |||| | || |||||||| |||||
Sbjct 476 CACTTCACAG-AAAGTTGTATCCACTGAGACAGCTAAGG-CTTTTGCAGATGAACTTGGG 533
Query 565 ATTCCCTTTCTTG-AGACCAGTGCCAA 590
|| ||| |||||| | || ||||||||
Sbjct 534 AT-CCCATTCTTGGAAACAAGTGCCAA 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5