BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11740.1
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478520 jgi|Araly1|478520|fgenesh2_kg.3__1221__AT3G11740.1 948 0.0
> Ahg478520 jgi|Araly1|478520|fgenesh2_kg.3__1221__AT3G11740.1
Length=625
Score = 948 bits (513), Expect = 0.0
Identities = 593/631 (94%), Gaps = 7/631 (1%)
Strand=Plus/Plus
Query 43 AAAAAGATGGCGATCGTTAGCCCTAATTTCTGTGCACCGTACCCTATCGAGTTGGGAATC 102
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 AAAAA-ATGGCGATCGTGAGCCCTAACTTCTGTGCACCGTACCCTATAGAGTTGGGAATC 59
Query 103 GTACGGAAGGTGATGACTTTAACCGATGGTAACTTCGCCGTCACGGACGTTAACGGCAAT 162
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 GTACGCAAGGTGATGACTTTAACCGATGGTAACTTCGCCGTCACGGACGTTAATGGCAAT 119
Query 163 CTCCTTTTCAAAGTCAAGGAACCTTTGTTTAGCATCAGCGACAAAAGGATTTTATTGGAC 222
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 CTCCTTTTCAAAGTGAAAGAACCAATGTTTAGCATCAGCGACAAAAGGATTTTATTGGAC 179
Query 223 GCATACGATACTCCAATCTTGACTTTGAGAGAAAATAAGGTGAGCTTGCATGATAGGTGG 282
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCATATGATACTCCAATCTTGACTTTGAGAGAAAATAAGGTGAGCTTGCATGATAGGTGG 239
Query 283 CTAGTATATAGAGGGAAGAGTACAGACCAAAGTGATCTATTATACACATTGAAACGATCT 342
| ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 CAAGTATTTAGAGGGAAAAGTACAGACCAAAGTGATCTAGTATACACATTGAAACGATCG 299
Query 343 TCAATGATTCAAATAATGAAGCCAAAACTAGACATCTTTTTGGCTCATAATAAAGAAATG 402
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 300 TCGATGATTCAAATAATGAAGCCAAAACTTGACATCTTTTTGGCTCAAAATAAAGAAATG 359
Query 403 AAGATTTGCGACTTCCATGTTAAAGGAAGTTGGATCGACCGGTCTTGTGTCGTCTACGCC 462
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 360 AAGATATGCGACTTCCATGTGAAAGGAAGTTGGATCGACCGGTCTTGTGTCGTATACGCT 419
Query 463 GGCAAATCTGATGCCATTGTTGCTCAGATGCACAAGAAACATACGGCACAAAGCATATTA 522
||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 420 GGCAAATCTGATGCCATGGTTGCTCAGATGCACAAGAAACATACCGCAGAAAGCATATTA 479
Query 523 ATTGGGAAGAGTAATTTTTCGGTTACTGTCTATCCGAATGTTGACTTTGCTTTTATAGTT 582
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 ATAGGGAAGAGTAATTTTTCGGTTACGGTCTATCCGAATGTTGACTTTGCTTTTATAGTC 539
Query 583 TCTCTCATTGTAATCCTCGATGACATTAACCGAGAAGATTCAGAAGACTAG-ATTAAGTT 641
||||| |||||||| |||||||||||||||||||||||||||||| ||| || | |||
Sbjct 540 TCTCTTATTGTAATTCTCGATGACATTAACCGAGAAGATTCAGAA---TAGGAT-ATGTT 595
Query 642 ATCAACTAATTTCTTTTTGTGCGTTGCAAAT 672
||||||||||||||||||||||||||||||
Sbjct 596 -TCAACTAATTTCTTTTTGTGCGTTGCAAAT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25351739805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5