BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11750.1
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478521 jgi|Araly1|478521|fgenesh2_kg.3__1222__AT3G11750.1 664 0.0
Ahg905201 jgi|Araly1|905201|Al_scaffold_0003_2329 241 4e-63
> Ahg478521 jgi|Araly1|478521|fgenesh2_kg.3__1222__AT3G11750.1
Length=440
Score = 664 bits (359), Expect = 0.0
Identities = 414/441 (94%), Gaps = 2/441 (0%)
Strand=Plus/Plus
Query 1 ATGCATAGCTCACTGGAGACCACGGCTCCGGCGACGTTGGAGCGACGAGAGTCAAAT-CT 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1 ATGCATAGCTCACTGGAGACGACGGCTCCGGCGACGTTGGAGCGACGAGAGTC-AATGCT 59
Query 60 TGGAGACAAACTGATACTAAAAGGGTTGAAATTTTACGGTTTCCATGGAGCGATTGCTGA 119
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 TGGGGACAAACTGGTACTAAAAGGGTTGAAATTTTACGGTTTCCATGGAGCGATTCCTGA 119
Query 120 AGAAAGGACACTGGGGCAGATGTTTCTTGTTGACATTGATGCGTGGGTGAGTCTGAAAAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 AGAAAGGACACTGGGGCAGATGTTTCTTGTTGACATTGATGCGTGGGTGAGTCTGAAGAA 179
Query 180 GGCTGGTGAATCAGACAACTTAGAAGATACAATTAGCTACGTCGACATTTTCAGCCTAGC 239
||| ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 180 GGCCGGTGAATCAGACAACTTAGCAGATACAATCAGCTATGTCGACATTTTCAGCCTAGC 239
Query 240 TAAGGAAATTGTTGAAGGGTCACCAAGAAACCTTTTGGAGACAGTCGCGGAACTTATTGC 299
|||||||||||||||||||||||||||||||||| | ||| ||||||||||||| || ||
Sbjct 240 TAAGGAAATTGTTGAAGGGTCACCAAGAAACCTTCTCGAGGCAGTCGCGGAACTCATCGC 299
Query 300 TTCCAAAACGCTTGAAAAATTCCATCAGATAAACGCTGTTCGAGTGAAGCTCTCAAAGCC 359
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 300 CTCCAAAACTCTTGAGAAATTCCCTCAGATAAACGCTGTTCGAGTGAAGCTCTCGAAGCC 359
Query 360 AAATGTTGCACTTATTAAGAGCACCATTGATTATTTAGGGGTCGATATATTCAGACAGCG 419
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 360 AAATGTTGCACTTATTAAGAGCACCATTGATTACTTAGGGGTCGAGATTTTCAGACAGCG 419
Query 420 AAACACTAGTTCAAAGAACTG 440
|| || |||||||| ||||||
Sbjct 420 AAGCAGTAGTTCAAGGAACTG 440
> Ahg905201 jgi|Araly1|905201|Al_scaffold_0003_2329
Length=483
Score = 241 bits (130), Expect = 4e-63
Identities = 294/371 (79%), Gaps = 19/371 (5%)
Strand=Plus/Plus
Query 67 AAACTGATACTAAAAGGGTTGAAATTTTACGGTTTCCATGGAGCGATTGCTGAAGA-AAG 125
||||||||||| | ||||||||||||||||||||||||||||| | || | ||||| |||
Sbjct 121 AAACTGATACTGAGAGGGTTGAAATTTTACGGTTTCCATGGAGTGCTTCCAGAAGAGAAG 180
Query 126 GACACTGGGGCAGA-TGTTT-CTTGTTGACATTGATGCGTGGGTGAGTCTGAAAAAGGCT 183
| | ||||| | ||||| | |||||||||||| |||| ||||||||||||||||
Sbjct 181 AA-ATTGGGGG-GTCTGTTTACC-GTTGACATTGATTTGTGGTTGAGTCTGAAAAAGGCC 237
Query 184 GGTGAATCAGACAACTTAGAAGATACAATTAGCTACGTCGACATTTTCAGCCTAGCT-AA 242
||| ||||||||||||| ||||||| | |||| | ||| | ||||||||||| | ||
Sbjct 238 ATTGAGTCAGACAACTTAGCAGATACAGTCAGCTTTGCCGATACTTTCAGCCTAG-TGAA 296
Query 243 GGAAATTGTTGAAGGGTCACCAAGAAACCTTTTGGAGACAGTCGCGGAACTTATTGCTTC 302
| |||||||||||||| |||||| |||||||| ||||| || ||||| | || || ||
Sbjct 297 GAAAATTGTTGAAGGGCCACCAAAAAACCTTTACGAGACGGTTGCGGATCACATAGCGTC 356
Query 303 CAAAACGCTTGAAAAATT-CCATCAGATAAACGCTGTTCGAGTGAAGCTCTCAAAGCCAA 361
|||| |||||||| || || | ||||||||| | ||||||| ||| || ||||||||
Sbjct 357 TAAAATGCTTGAAACGTTTCC-TAAGATAAACGTTATTCGAGTCAAGTTCGGAAAGCCAA 415
Query 362 ATGT-TGCACTTA-TTAAGAGCACCATTGATTAT-TTAGGGGTCGATATATTCAG-ACAG 417
|| | |||| | |||| |||||| |||||| | ||||| | ||| | ||||| | ||
Sbjct 416 ATCCCT-CACT-AGTTAATAGCACCGTTGATT-TCTTAGGTGCCGAGCTTTTCAGGA-AG 471
Query 418 CGAAA-CACTA 427
||||| |||||
Sbjct 472 CGAAAGCACTA 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15910880613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5