BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11760.1
Length=2350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478522 jgi|Araly1|478522|fgenesh2_kg.3__1223__AT3G11760.1 3567 0.0
> Ahg478522 jgi|Araly1|478522|fgenesh2_kg.3__1223__AT3G11760.1
Length=2354
Score = 3567 bits (1931), Expect = 0.0
Identities = 2224/2364 (94%), Gaps = 26/2364 (1%)
Strand=Plus/Plus
Query 1 CTAGATTCTCTCTAGGTTTCCCTAAATTTCTCAACTACTCCTAAAGAGTTTTGTTACGTT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 CTAGATTCTCTCTAGGTTTCCCTAAATTTCTCAACTACTTGAAAAGAGTTTTGTTACGTT 60
Query 61 TC--TG----TGT--GATTCTC---Cttttttt-CTTGACGACTCCAAA-T-TTCGT--T 104
|| || ||| ||||||| ||||||| ||||||||||||||| | || | |
Sbjct 61 TCTTTGTTCCTGTAAGATTCTCTTTTTTTTTTTGCTTGACGACTCCAAATTATTTTTAAT 120
Query 105 TTTGCGTAAATGGTGGTGAAGATGATGAAGTGGCGGCCATGGCCGCCGTTAGTTACGAGG 164
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTGCGTAAATGGTGGTGAAAATGATGAAGTGGCGGCCATGGCCGCCGTTAGTTACGAGG 180
Query 165 AAATACGAGGTGAAGCTTTCCGTGAAGAAGCTTGAGGGTTGGGATCTGGTGAGGGAAGGT 224
||||| ||||||||||| ||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 181 AAATATGAGGTGAAGCTAGCCGTGAAGAGGCTTGAAGGTTGGGATCTGGTGCGGGAAGGT 240
Query 225 GTACCGGAGAAAGATAGATTAACGGTGGAGATTCGTTGGAAAGGTCCTAAGGCGACATTG 284
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GTACCGGAGAAAGAGAGATTAACGGTGGAGATTCGTTGGAAAGGACCTAAGGCGACATTG 300
Query 285 GGATCTTTGAGAAGGTCGGTGAAGAGGAATTTCACCAAGGAAGCTGTGGGAGAAAGCGAT 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGATCTTTGAGAAGGTCGGTGAAGAGGAATTTCACCAAGGAAGCTGTGGGAGAAAGCGAC 360
Query 345 GTCGTTTCATGGGAAGATGAAGAGTTTCAGAGCTTATGTTCACTCACTTCTTACAAGGAC 404
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 ATCGTTTCATGGGAAGACGAAGAGTTTCAGAGCTTATGTTCACTCACTTCTTACAAAGAC 420
Query 405 AGTTTGTTTTATCCTTGGGAGATAACTTTCTCTGTCTTCACCAATGGAATGAAGCAAGGG 464
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 421 AGTTTGTTTTATCCTTGGGAGATTGCTTTCTCTGTCTTCACCAATGGAATGAAACAAGGG 480
Query 465 CAGAAGAATAAAGCTCCTGTTGTTGGAACGGCATTTTTGAATCTTGCTGAGTACGCGTGT 524
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 481 CAGAAGAATAAAGCTCCTCTTGTTGGAACTGCATTTTTGAATCTTGCTGAGTACGCGCGT 540
Query 525 GTGACCGATAAAAAAGAATTCGATATAAACATACCACTTACGCTCTCTGCTTGTGTGGCC 584
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||
Sbjct 541 GTGACCGATAAAAAAGAATTCGATATTAACATACCTCTTACGCTCTCTGCCTGTGTGACC 600
Query 585 TCTGAGACACATCCTTTGCTCTTTGTATCATTGAGCCTGCTTGAGCTTAGAACTACTCCA 644
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 601 TCTGAGCCACATCCATTGCTCTTTGTATCATTAAGCCTGCTTGAGCTTAGAACCACTCCA 660
Query 645 GAAACATCAGACTCGGCAGCACAAACCGCGGTTGTGCCTTTGCCTCTCCCATCTCCATCG 704
|||||||||||||| |||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct 661 GAAACATCAGACTCAGCAGCACAAACCGCGGTTGTGCCTGTGCCTGTCCCGTCTCCATCG 720
Query 705 CCACAACAGCCTACTGAAACTCACTCAGTTGAGAAGGAGGATGTCTCTGCAATCAAAGCT 764
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 721 CCACAACAGCCTACTGAAACTCACTCAATTGAAAAGGAGGATGTCTCTGCAATCAAAGCT 780
Query 765 GGTCTCAGAAAAGTCAAGATTTTCACAGAGTTTGTTTCTACAAGGAAAGCCAAGAAGGCT 824
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GGTCTCAGAAAAGTCAAGATTTTTACAGAGTTTGTTTCTACAAGGAAAGCCAAGAAGGCT 840
Query 825 TGCAGGGAAGAAGAAGGCAGATTCTCAAGCTTTGAATCATCAGAATCGCTTGATGATTTC 884
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 TGCCGGGAAGAAGAAGGCAGATTCTCAAGCTTTGAATCATCAGAATCACTTGATGATTTC 900
Query 885 GAGACAGATTTTGATGAAGGCAAAGAAGAATTGATGAGTATGAGAAAATCTTTCTCTTAT 944
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 901 GAGACAGATTTTGATGAAGGCAAAGAAGATTTGATGAGTGTGAGAAAATCTTTCTCCTAC 960
Query 945 GGACCTTTGTCTTATGCAAATGGTGTGGGAACTTCATTAAACTGTGGCGCGAAAGTTAGC 1004
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct 961 GGACCTTTGTCTTATGCAAATGGTGCGGGAACTTCGTTAAACTGTGGCGCGAAGGTTAGC 1020
Query 1005 GATGAAGACGAAGATTGGGTTTATTATAGCCACAGGAAATCAGACGTTGGAGCAGGTTGC 1064
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1021 GATGAAGATGAAGATTGGGTTTATTATAGCCACAGGAAATCCGACGTTGGAGCAGGCTGC 1080
Query 1065 TCTGATGCTGAAGATTCCGCTGCGGGTTTGGTGTATGAGGCATCACTGCTTCCACGGCGT 1124
|| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1081 TCGGACGCTGAAGATTCCGCTGCGGGTTTGGTATATGAGACATCACTGCTTCCACGGCGT 1140
Query 1125 AGCATATTGCCATGGAGAAAGAGGAAGTTGAGCTTTAGGTCTCCGAAATCCAAAGGAGAG 1184
||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 1141 AGCATATTGCCGTGGAGAAAGCGGAAGTTGAGTTTTAGGTCGCCGAAATCCAAAGGAGAG 1200
Query 1185 CCTTTGTTAAAGAAGGATAATGGAGAAGAAGGTGGAGATGACATTGATTTTGATCGGAGG 1244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1201 CCTTTGTTAAAGAAGGATAATGGAGAAGAAGGTGGAGATGACATTGATTATGATCGGAGG 1260
Query 1245 CAACTTAGCTCAGATGAAGCTCATCCTCCATTTGGGAGCAAGATTGATGAAGATTCATCT 1304
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1261 CAACTTAGCTCAGATGAAGCTCATCCTCTTTTTGGGAGCAAGATTGATGAAGATTCATCT 1320
Query 1305 GCTAATCCACGAACTTCGTTCTCGGAGTTTGGAGAAGACAGTTTTGCGATTGGAAGTTGG 1364
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCTAATCCGCGATCTTCTTTCTCGGAGTTTGGAGAAGACAGTTTTGCGATTGGAAGTTGG 1380
Query 1365 GAGGAGAAAGAAGTGATAAGCCGAGATGGACACATGAAGCTCCAGACAAGTGTCTTTCTT 1424
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1381 GAGGAGAAAGAAGTGATAAGCCGAGATGGACACATGAAGCTTCAGACAAATGTCTTTCTT 1440
Query 1425 GCTTCTATTGACCAGAGAAGCGAGCGAGCAGCTGGTGAGAGTGCATGCACTGCTCTTGTA 1484
||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1441 GCTTCGATCGACCAGAGAAGCGAGCGAGCAGCTGGTGAGAGTGCCTGCACCGCTCTTGTA 1500
Query 1485 GCGGTCATTGCGGATTGGTTTCAGAAGAATGGTAATCTCATGCCAATCAAGTCTCAGTTC 1544
||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1501 GCGGTTGTTGCGGATTGGTTTCAGAAGAATGGTAACCTAATGCCGATCAAGTCTCAGTTT 1560
Query 1545 GATAGTTTGATCAGAGAAGGTTCTTTAGAATGGAGAAACCTCTGCGAAAACGAAACGTAT 1604
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1561 GATAGTTTGATCAGAGAAGGATCTTTAGAGTGGAGAAACCTCTGCGAAAACGAAACGTAT 1620
Query 1605 ATGCAGAAATTCCCTGACAAGCATTTCGATCTTGATACCGTGCTACAAGCAAAGATACGG 1664
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1621 ATGCAGAAATTCCCTGACAAGCATTTCGATCTTGATACCGTGGTACAAGCAAAGATTCGT 1680
Query 1665 CCTCTAACCGTTATCCCCGGAAAATCCTTTGTTGGGTTTTTCCATCCTGATGGGATGATC 1724
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 1681 CCTCTAACCGTTATCCCAGGAAAGTCCTTTGTTGGGTTTTTCCACCCTGACGGGATGATC 1740
Query 1725 AACGAGGGTAGATTCGAGTTTCTACAAGGCGCAATGTCTTTCGATAGTATTTGGGCTGAA 1784
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 AACGAGGGAAGATTCGAGTTTCTACAAGGCGCAATGTCTTTCGATAGTATTTGGGCTGAG 1800
Query 1785 ATTATTAGTCTGGAGGAAAGCTCGGCGAATGGTGATAGCTATGATGATGATTCGCCACCG 1844
||||||||||| ||||||||||| |||||| | ||||| ||||||||||| ||| |||||
Sbjct 1801 ATTATTAGTCTCGAGGAAAGCTCCGCGAATAGCGATAGTTATGATGATGACTCGTCACCG 1860
Query 1845 CACGTTTACATAGTGAGTTGGAACGATCACTTCTTTGTCCTCAAAGTTGAAAAAGAAGCT 1904
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1861 CATGTTTACATAGTGAGTTGGAATGATCACTTCTTTGTCCTCAAAGTTGAAAAGGAAGCT 1920
Query 1905 TACTATATCATTGACACACTTGGAGAAAGGCTTTACGAGGGTTGTGATCAAGCTTACGTT 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TACTATATCATTGACACACTTGGAGAAAGGCTTTACGAGGGTTGTGATCAAGCTTACGTT 1980
Query 1965 TTGAAATTCGACCATAAAACCGTCATCCACAAGATTCTTCACACAGAGGAAGCAGGATCC 2024
|||||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||||
Sbjct 1981 TTGAAATTCGACCATAAAACTGTCATCCACAATATTCTTCATACAGAGGAATCGGGATCC 2040
Query 2025 GAATCAGAACCTGAATCAGAGATTTTGAGCAGAGGGAAGGAGTCATGTAAAGAGTATATT 2084
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2041 GAATCAGAACCTGAATCAGAGATTGTGTGCAGAGGGAAGGAGTCATGTAAAGAGTATATT 2100
Query 2085 AAGAATTTCTTGGCGGCCATACCAATTAGGGAGTTGCAAGAGGATATCAAGAAAGGATTA 2144
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2101 AAGAATTTCTTGGCGGCGATACCAATCAGGGAGTTGCAAGAGGATATCAAGAAAGGATTA 2160
Query 2145 GCCTCAACCGCGCCTGTTCATCACCGTTTACAGATCGAGTTTCATTACACCACAAACGCA 2204
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2161 GCCTCGACCGCGCCTGTTCATCACCGTTTACAGATCGAGTTTCACTACACCACAAACGCA 2220
Query 2205 GAGATTACCAGTCTATAAAAGCCTAGGCAGAGTTGCTAACGTTTTGTTGAGTTTCTTGTA 2264
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2221 GAGATTACCAGTCTG-AAA-GCCTAGGCAGAGTTGCTAACGTTTTGTTGAGTTTCTTGCA 2278
Query 2265 AGTTTTGTAACTAACTTGTGAATGTGATTTAGAGTTAAACCAGTTTGTATCTAACTATCC 2324
||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2279 AGTCTTGTAACTAACTTGTGAATGTGATTTAGAGTTAAACCAGTTTGTA-C---CTA--- 2331
Query 2325 AAGGAATTTACATTTTTGCTCGTT 2348
| |||||||||||||||| |||||
Sbjct 2332 A-GGAATTTACATTTTTGATCGTT 2354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88521729380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5