BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11770.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928894 jgi|Araly1|928894|scaffold_301351.1 992 0.0
> Ahg928894 jgi|Araly1|928894|scaffold_301351.1
Length=643
Score = 992 bits (537), Expect = 0.0
Identities = 606/640 (95%), Gaps = 1/640 (0%)
Strand=Plus/Plus
Query 63 AGTGATTTCAGACCACAATGGCCTCATTCGATGGGCAAGGGTTTATGATGGTTGATAATT 122
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 AGTGATATCAGACCAC-ATGGCCTCATTCGATGGGCAAGGGTTTATGATGGTTGATAATT 63
Query 123 CTTGGGTCCAGACCAAAGCCATTGATGTTGAATCAACAACCGATATCTCTCCTTACCTTT 182
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 64 CTTGGATCCAGACCAAAGCCATTGATGTTGGATCAACAACCGATATCTCTCCTTACCTTT 123
Query 183 CCAAGATCCTTGAAGATTCCGTCTGGAATGGAAACCGGTCCATTGTCTTTGATGTGTATT 242
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 124 CCAAGATCCTAGAAGATTCCGTCTGGAATGGAAACCGGTCCATTGTCTTCGATGTGTACT 183
Query 243 GGGATGTCAAATCAGTTAGCACAAAGTCCGAATGGCGTCTATGCTCAGTGAAGTTTAGCA 302
||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GGGATGTTGAATCTGTTAACACAAAGTCCGAATGGCGTCTATGCTCAGTGAAGTTTAGCA 243
Query 303 CTAAAAACTTCTGTCTCTTCCTCCGCCTGCCGAACCCGTTCTGTGATAATCTCAAGGATC 362
| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct 244 CGAAAAACTTCTGTCTCTTCCTCCGCCTCCCTAACCCGTTCAATGATAATCTCAAGGATC 303
Query 363 TTTATCGCTTCTTTGCTTCCAAATTTGTCACATTTGTCGGTGTCCAGATTCAAGAAGACC 422
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 304 TTTACCGCTTCTTTGCTTCAAAATTTGTCACATTTGTCGGTGTCCAGATCCAAGAAGACC 363
Query 423 TCGCTTTGCTTAAAGAAAACCACGGTATTGTGATCCGAAGCTCGTTGGAGATTGGGAAAC 482
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 364 TCGCTTTGCTTAAAGAAAACCACGGTATTGTGATCCGAAGCTCTTTGGAGATTGGGAAAT 423
Query 483 TAGCTGCGAAAGCCCGAGGTACTCCAATTGTTGAGTTCCTTGGAACCAGAGAATTAGCTC 542
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 424 TAGCTGCGGTTGCCCGAGGAACTCCAATTGTTGAATTCCTTGGAACCAGAGAATTAGCTC 483
Query 543 ACAAGATTCTTTGGTATGACATGAGTAGGCTTGATTCTATTCAGTCCAAGTGGGATGAAG 602
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 484 ACAAGATTCTTTGGTATGACATGAGTCGGCTTGATTCTATTCAGTCCAAGTGGGATGAAG 543
Query 603 CCAGCTCTAATGATCGTCTTGAAGCTGCTGCCATTGAAGGTTGGCTTATTTTCAATGTCT 662
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 544 CAAGCTCTAATGATCGTCTTGAAGCTGCAGCCATCGAAGGTTGGCTTATTTTCAATGTCT 603
Query 663 ACGATCAATTGCAGCAGTGATTTTTCGTGGCAATGTTCTT 702
|||||||||||||||||||| || ||| |||||||| |||
Sbjct 604 ACGATCAATTGCAGCAGTGACTTCTCGAGGCAATGTCCTT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5