BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11773.2
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341299 jgi|Araly1|341299|fgenesh1_pg.C_scaffold_3001062 595 1e-169
> Ahg341299 jgi|Araly1|341299|fgenesh1_pg.C_scaffold_3001062
Length=612
Score = 595 bits (322), Expect = 1e-169
Identities = 532/627 (85%), Gaps = 39/627 (6%)
Strand=Plus/Plus
Query 75 ATGATGGATATGAAGGAGAGAATGGTGAAGAAACTTAAGCTTATTACATCTCTTGGGAAC 134
|||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 ATGAAGGATGTGAAGGAGAGAATGGTGAAGAAACTTAAGCTTATAAAATCTCTTGGGAAC 60
Query 135 TTGAAGCAGGCGATAGCTCTCCACAAAAGCAATCTTGATCACACAATCTTTCATCAAATA 194
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTGAAGCAGGCGATAGCTCTCCACAAAAGCAATCTTGATCGCACAATCTTTCATCAAATA 120
Query 195 GATGAGAAAGAGTGTCTTACGCCAACGACAATTGAGGT-TTCTGAGGATA-AACGACTTC 252
|||||||||||||||||||||||||| ||| ||||| | |||||| || | ||| |||||
Sbjct 121 GATGAGAAAGAGTGTCTTACGCCAACAACACTTGAG-TCTTCTGAAGA-ACAACAACTTC 178
Query 253 AACAGAATCTTGATGAGCTTTTGTGGGCTTTTGAAGAGAAATGTGTAGCTGGTGG-GCAA 311
||||||||||||| |||| ||||| || ||| ||||||||||||||||||| || | ||
Sbjct 179 AACAGAATCTTGAAGAGCCTTTGTCGGAGTTTAAAGAGAAATGTGTAGCTGGAGGAG-AA 237
Query 312 GATTCTGTTG-CTTCTTCACAACAAG-CAT-C-ATTCCG--AGAAAGA-----GATGTTT 360
|||||||||| ||||| ||| ||||| | | | | | | ||||||| || | ||
Sbjct 238 GATTCTGTTGTCTTCTACACGACAAGTC-TGCGAG-CAGTGAGAAAGACTTTCGAAGATT 295
Query 361 -CA-A----TG-GATTGTGAGTACA-AAGAAGA-GATGTGGAGATTGCTTGGGGAGCAAG 411
|| | || |||| | | || | || | | |||||||| |||| |||||||| |||
Sbjct 296 GCAGAAAAGTGAGATTCTTACTAGAGAATCATAAGATGTGGAAATTGATTGGGGAGAAAG 355
Query 412 TTACACCTCCTAGGCTCTTCATAAAGTGTAAGTACATTGGTGGAGCAGACGAGGTGGTGT 471
|||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 356 TTACACCTCCTAGGCTTTTCGTAAAGTGTAAGTACATTGGTGGCGCAGACGAAGTGGTGG 415
Query 472 CTCTTAACGAAAACGAGAAGCTCAAGAAGCTTCTAGAAGTGTTTTCATCAGCTAAGTCGC 531
|||| ||||||| || ||||||||||| |||| ||| ||||||||||| |||
Sbjct 416 CTCTGAACGAAACCGGGAAGCTCAAGATGCTTTTAG---------CATCAGCTAAGGCGC 466
Query 532 GGCAGTGTGAGATGT-GCGAGAACGAAAGATTTTTGATATGTTCGAAATGCAATGGGAGG 590
|||||||||| |||| ||||| ||||| | ||||| ||||||| ||| ||||||||||||
Sbjct 467 GGCAGTGTGA-ATGTTGCGAGGACGAACGGTTTTTTATATGTTGGAATTGCAATGGGAGG 525
Query 591 TCGAGAGTTGTTGCAGAGCACGAAACCTGGAAGAGATGCATAGAGTGTAATGAGAATGGT 650
|||||||| || |||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 526 TCGAGAGTGGTAGCAGAGGATGAAATGTGGAAGAGATGCATAGAGTGTAATGAGAATGGT 585
Query 651 CTTGTGAAATGTGCTCTTTGTACTTAA 677
||||||||||| |||||||||||||||
Sbjct 586 CTTGTGAAATGCGCTCTTTGTACTTAA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28554064833
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5