BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11780.2
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478524 jgi|Araly1|478524|fgenesh2_kg.3__1225__AT3G11780.1 614 4e-175
> Ahg478524 jgi|Araly1|478524|fgenesh2_kg.3__1225__AT3G11780.1
Length=697
Score = 614 bits (332), Expect = 4e-175
Identities = 427/470 (91%), Gaps = 17/470 (4%)
Strand=Plus/Plus
Query 4 TCTGTCTTTGTCTCTTGCTTGTTTAGTCTCTCCTCTCCTCCTCGTCCTCAATCATCATCA 63
|||||||||||||||||||||||||| ||| | ||||||||| | |||||||
Sbjct 1 TCTGTCTTTGTCTCTTGCTTGTTTAG-------TCT--T-CTCGTCCTC-A--ATCATCA 47
Query 64 TCTGAGAATTCGCAGCTTTTGCTTCTTCGATAGAAAATCTAATTATCATCAATCATGTCT 123
||||||||||||| ||||||| |||||||| |||| | |||||||||||||||||||||
Sbjct 48 TCTGAGAATTCGCTGCTTTTGGTTCTTCGAGAGAATACCTAATTATCATCAATCATGTCG 107
Query 124 AA-GTTCACGGGATTCT-CATCTCTCGCTATCTCTTATTTTCTCTTGGTTTCAACGATTG 181
|| ||| |||||||| | | ||||||||||||||||||||||| || |||||||||||||
Sbjct 108 AAGGTT-ACGGGATT-TACTTCTCTCGCTATCTCTTATTTTCTTTTCGTTTCAACGATTG 165
Query 182 TTGCAGCCACCGATGTTCACTACTGCGATAATAACGAAGAGTATGAAGTAAAAGTACAAG 241
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 166 TCGCAGCCACCGATGTTCACTACTGCGATAATAATGAAGAGTATGAAGTAAAAGTACAAG 225
Query 242 GAGTTGATATAACTCCTTATCCTATAGCTAGAGGCGAGCCAGCTACTTTCAGAATTTCTG 301
|||||||||||| |||||||||| |||||||||||| |||||| |||||||| |||||||
Sbjct 226 GAGTTGATATAATTCCTTATCCTGTAGCTAGAGGCGCGCCAGCCACTTTCAGCATTTCTG 285
Query 302 CTAACACAGACACTGAGATCTCGAGCGGCAAGTTGGTGATCGAAGTTTCCTACTTTGGAT 361
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 286 CTAACACAGACACTGAGATCTCTAGCGGCAAGTTGGTGATCGAAGTCTCATACTTTGGAT 345
Query 362 GGCATATTCATTCTGAGACACATGATCTTTGTGATGAGACAAGTTGTCCTGTGGCCATTG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 346 GGCATATTCATTCTGAGACACATGATCTTTGTGATGAGACAAGTTGTCCTGTGGCGGTTG 405
Query 422 GAGATTTCTTGGTAGCGCACTCGCAAGTTCTTCCCGGATATACCCCTCCT 471
|||||||| |||||| |||||||||||||| ||||||||||| ||||||
Sbjct 406 GAGATTTCGTGGTAGAACACTCGCAAGTTCTACCCGGATATACTCCTCCT 455
Score = 316 bits (171), Expect = 1e-85
Identities = 230/256 (90%), Gaps = 14/256 (5%)
Strand=Plus/Plus
Query 526 GGTTCATACTCACTAAAAATGAAGATGCTTGATGGACGCAAGAAGGAGTTAACTTGCATC 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GGTTCATACTCACTAAAAATGAAGATGCTTGATGGACGCAAGAAGGAGTTAACTTGCATC 515
Query 586 AAGTTCTCATTTGATATTGGATTTGGATCCTCCGTGGCCGACATGTAGAGCTGATTTGCT 645
|| ||||||||||| ||||||||| ||| |||||||||||||| ||||||| | | |
Sbjct 516 AAATTCTCATTTGAGATTGGATTTTTATCATCCGTGGCCGACATTTAGAGCT--TAT--T 571
Query 646 CGACGGGATACACCATCTTGTTCTATACCATGGAACCACTCTCATTTATTTTGTATAAAA 705
|| | | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 572 CG-C----T----CATCTTGTTCTATACCATTAAACCACTCTCATTTATTTTGTATAAAA 622
Query 706 TACACTCTCCTGCTATACATAATTGTTGATCAAAAACCCTTTGAAAATTCTCATTCTGGA 765
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 623 TACACTCTTTT-CTATACATAATTGTTGATCAAAACCCCTTTGAAAATTCTCATTCTGGA 681
Query 766 CCATTCATGAATCCCC 781
||||||||||||||||
Sbjct 682 CCATTCATGAATCCCC 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5