BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11800.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478525 jgi|Araly1|478525|fgenesh2_kg.3__1226__AT3G11800.1 1419 0.0
> Ahg478525 jgi|Araly1|478525|fgenesh2_kg.3__1226__AT3G11800.1
Length=935
Score = 1419 bits (768), Expect = 0.0
Identities = 895/953 (94%), Gaps = 21/953 (2%)
Strand=Plus/Plus
Query 3 TGAATCGGAGTTTTCGAAAATTTT-GAAGGGAGCTTTTCTGACAGATGGCTAGATTCTTT 61
|||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||| ||
Sbjct 1 TGAATCGGAGTTTTCG-AAATTTTGGAA-GGAGCTTTT-TGACAGATGGCTAGATTCCTT 57
Query 62 CTTCTCTGTTGCCTCTTCGCGGCGGTGCTGACGTCATCATTGACGGAGGCCGGCGACAAT 121
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 58 CTTCTCTGTTTCCTCTTCGCGGCGGTGCTAACGTCATCATTGACGGAGGCCGGCGACAAT 117
Query 122 AATCAAGTCTACTCGCCTTGTTCAGATTCTACTGTTGCGATCGGCGATGGATTCACTTTC 181
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AACCAAGTATACTCGCCTTGTTCAGATTCTACTGTTGCGATCGGCGATGGATTCACTTTC 177
Query 182 GGCATTGCCTTCGCTGCGAAAGATTCTTTCTTCAGTACAAATCGATCCAAATC-CGTTCA 240
|||||||||||||| |||| |||||||||||||||||||||||| ||| ||| |||||
Sbjct 178 GGCATTGCCTTCGCGGCGAGAGATTCTTTCTTCAGTACAAATCGTTCC-GATCATGTTCA 236
Query 241 GTACTCTCCCTGCGATCATCGCCATCTCTCGCTCAACGGAAACTCTGAGGTCGCCGTGTT 300
||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||
Sbjct 237 GTACTCTCCCTGCGATCGTCACCGTCTCTCGCTCAACGGTAACTCTGAGGTCGCCGTGTT 296
Query 301 CAGACCTAAAGTCGATGAGATCACACTCCTTACCATCAATACCTCTAGTTCCTCCAGTTT 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 CAGACCTAAAGTCGATGAGATCACTCTCCTTACCATCAATACCTCTAGTTCCTCCAGTTT 356
Query 361 CCGCCCGGATGCTTCCAAGGGATATATGGTAGCATTCGCTGGTGCAAAATACGCTGCAAG 420
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 CCGTCCGGATGCTTCAAAGGGATATATGGTTGCATTCGCTGGTGCAAAATACGCTGCAAG 416
Query 421 ATCACTCCCAATTATGGTTGCAGACAGCAATCACATCGTGACAAGCTTCACCCTTGTTCT 480
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 417 ATCAATCCCAATTATGGTTGCAGACAGCAATTACATCGTGACAAGCTTCACCCTTGTTCT 476
Query 481 TGAGTTCCAGAAAGGAAGGCTTGA-GAACATGTTCTGGAAGAAAGACGGATGCTCGAAGT 539
|||||||||||| || |||||||| ||| ||||||||||| ||||||||||||||||| |
Sbjct 477 TGAGTTCCAGAAGGGCAGGCTTGAGGAA-ATGTTCTGGAAAAAAGACGGATGCTCGAAAT 535
Query 540 GTTCTGGAGATTCGAAATTCGTGTGCCTCAACAAAGAAGAATGTGCGATCAAGCCGCAAA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 536 GTTCTGGAGATTCGAAATTCGTGTGCCTCAACAAAGAAGAATGTGCAATCAAGACGCAAA 595
Query 600 ACTGCAAGAACCAAGGAGGACAAGTAGATTGTAGCTTGGGGATCCAATTGGCGTTTTCGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 596 GCTGCAAGAACCAAGGAGGACAAGTAGATTGTAGCTTGGGGATCCAATTGGCGTTTTCAG 655
Query 660 GCACGGATAAGCACTACACCGCGTTGAATTCGTGGTATGAGGTTGCAAATCTGAAGCAGT 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCACGGATAAGCACTACACTGCGTTGAATTCGTGGTATGAGGTTGCAAATCTGAAGCAGT 715
Query 720 ACTCGCTCTATGGCCTCTACTCCAATCTAAAGGACTCACTAACCAACCCATTCAAGAACA 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 716 ACTCGCTCTATGGCCTCTACTCCAATCTTAAGGACTCACTAACCAACCCATTCAAAAACA 775
Query 780 TCTTCTGATGACTTTCTTTCTCCTTTGTGTGTTGCTACTCTTGTAattttgtattatttt 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TCTTCTGATGACTTTCTTTCTCCTTTGTGTGTTGCTACTCTTGTAATTTTGTATTATTTT 835
Query 840 ttcacctgctttctttgtattatttcttccgtatgatttttgctatatattgtattttat 899
|| || ||| | ||| | | |||| |||||||| ||||| ||||||||||||||
Sbjct 836 TTT---TG-TTT-T----ATT-TCT-TTCC-TATGATTTATGCTACATATTGTATTTTAT 883
Query 900 TACTTGGGCGTTTAACTTTTTCATGAATTAAATAGTCAGAATACTCTCAGATA 952
| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TTCTTGG-CGTGTAACTTTTTCATGAATTAAATAGTCAGAATACTCTCAGATA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5