BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11810.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484241 jgi|Araly1|484241|fgenesh2_kg.5__233__AT3G11810.1 1410 0.0
> Ahg484241 jgi|Araly1|484241|fgenesh2_kg.5__233__AT3G11810.1
Length=1160
Score = 1410 bits (763), Expect = 0.0
Identities = 971/1067 (91%), Gaps = 32/1067 (3%)
Strand=Plus/Plus
Query 15 TACGCTTCAATGGCGACTCCAACTCCATCTCTA--T-CTCCTCCT-CCATTGAATCTCTG 70
||||||||||||||||||||| | | ||||||| | |||||||| ||| ||||||||||
Sbjct 1 TACGCTTCAATGGCGACTCCATCACAATCTCTATCTCCTCCTCCTCCCA-TGAATCTCTG 59
Query 71 GATAATCTTATCAGAATCAAAACGAATCATCAACGCACACTCACGTCACTTCCTAGctct 130
| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 60 GGTAATCTTATCAGAATCAAAACGAATCATCAACGCTCACTCACGTCACTTCTTAGCTCT 119
Query 131 ctccgttctcttcctcctccctctctgcttctccATCACAGTTTACCCTTCCGTCTTCCT 190
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 CTCCGTTCTCTTCCTCCTTCCTCTCTGCTTCTCCGTCACAGTTTACCCTTCCGTCTTCCG 179
Query 191 TCTCATCACCGATCAATCATCCGCTTCTCACAACACCGTCTCTCTCCTCCGCGGCGGACT 250
|||||||||||||||||| |||||||||||||||| |||||||||||| | | |||||||
Sbjct 180 TCTCATCACCGATCAATCCTCCGCTTCTCACAACAGCGTCTCTCTCCT-C-C-GCGGACT 236
Query 251 CCACAACAACAACGATGATGACATCGATACCAAAACAACGGTCTTACTTGTAATCGGTTA 310
|||| ||| ||| |||||| ||||||| |||||||||||||| ||| | || |||||
Sbjct 237 CCAC--CAA-AAC---GATGACGTCGATACTAAAACAACGGTCTTGCTTCTGATTGGTTA 290
Query 311 CATCGTTGTTATCACCGTCTTCAATCTCTTAGCTATTGGATCAATCGCTTATAGTGTGTT 370
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CATCGTTGTTGTCACCGTCTTCAATCTCTTAGCTATTGGATCAATCGCTTATAGTGTGTT 350
Query 371 TCAAGGATTCTATGGTAGACCTGTGAAATTGAACTCTGCAGTGAAATCGAGC-TTCGCTT 429
|||||| |||||||| |||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 351 TCAAGGTTTCTATGGAAGACCTGTGAAATTGATCTCTGCAGTGAAATCGAGCGTT-GCTT 409
Query 430 CGTTTTTACCTCTTCTCGCTACTTTGACCTCATCGAATCTT-ATAGTTTTAGGGGG-TTT 487
||||||||||||||||||||||||||| ||||||||| || |||||||| ||||| |||
Sbjct 410 CGTTTTTACCTCTTCTCGCTACTTTGATTTCATCGAAT-TTCATAGTTTT-GGGGGTTTT 467
Query 488 TCTGATTCCAGGGATTTTAGCTTTCTTGTTGGTTAAGCTTATTGAGACCATTCCCGGTGT 547
| |||||| |||||||||||||||||||||| |||| | ||||||| || |||| | ||
Sbjct 468 TATGATTCTAGGGATTTTAGCTTTCTTGTTGACTAAGGTAATTGAGATCA-TCCCCG-GT 525
Query 548 AGAATTCGATTACGCCTCTTCGTATTTCCAAGGTTTCGTAACCCTAGTAACGATTATCTC 607
| || ||||| | |||||||||||||||||||| ||| | ||||||||||||| ||
Sbjct 526 -G---TCTATTACTCATCTTCGTATTTCCAAGGTTTTATAATCGTAGTAACGATTATGTC 581
Query 608 GATTGCGATTGCAG-TTAAGCTCTATGTGAATTGGATTCTTGCTTGGGTTGTTGTTGTTG 666
|||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 GATTGCAATTAC-GATTAAGCTCTATGTGAATTGGATTCTTGCTTGGGTTGTTGTTGTTG 640
Query 667 TTGAATCAGCTTGGGGTATAACACCGTTGAAGAGAAGTAA-ACGCTTGGTTAAAGGAATG 725
||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||
Sbjct 641 TTGAATCAGCTTGGGGTTTAACACCATTGAAGAGAAGTAATA-GCTTGGTTAAAGGAATG 699
Query 726 AAATGTGCTTCTTTGTCGATTATCTTCTTCTTCGCTTCAACGGAATCGATTCTCGTTTGG 785
||| ||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 700 AAAGGTGTTTCTTTGTCGATAATCTTCTTCTTCGCTTCAACCGAATCGATTCTCGTATGG 759
Query 786 ATTAGTACCTTAGCCGCCTATGCTCAGCTCAACGATAACGAGAATGGTGGGAAGTCGTGG 845
||||||||||||||||||| ||||||||||| |||| | || ||||||||||||| |||
Sbjct 760 ATTAGTACCTTAGCCGCCTCTGCTCAGCTCATCGATGATGAAAATGGTGGGAAGTTATGG 819
Query 846 ACAG-ATGCTTTCTTTGTGGTACAGATTGTGATCACGTCTGCGTTTCTAACGCTGTTGAC 904
|| | ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 820 AC-GAATGCTTTCTTTGTGGTACAGATTGTTATCACGTCTGCGTTTTTAACGCTTTTGAC 878
Query 905 GTTGTATAATCTTGCGGCGACTACTGTGATGTATATGTATTGTAAAGCTGTTCATGGTGA 964
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GCTGTATAATCTTACGGCGACTACTGTGATGTATATGTATTGTAAAGCTGTTCATGGTGA 938
Query 965 GCTTGTTTGGGAGATAGCCGAAGAGTTTGCTAGAGAATATGTTAGCTTGCCTTTTGATGA 1024
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 939 ACTTGTTTGGGAGATAGCTGAAGAGTTTGCTAGAGATTATGTGAGCTTGCCTTTTGATGA 998
Query 1025 TGGTAAAGTTCCTCACTTGGTCTCTGTAGCTTACAACAACATCtgat 1071
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TGGTAAAGTTCCTCACTTGGTCTCTGTAGCTTACAACAACATCTGAT 1045
Score = 135 bits (73), Expect = 6e-31
Identities = 110/126 (87%), Gaps = 10/126 (8%)
Strand=Plus/Plus
Query 1109 tgatCTTGTTTGTTTTGTTGTTATGTTTTAAGGTAGTGTTTGGAAAA-CTGGTCTTCT-T 1166
|||||||||||||||||||||||||||| ||| | ||||| | |||| |||||||| | |
Sbjct 1042 TGATCTTGTTTGTTTTGTTGTTATGTTTCAAGTTCGTGTTCGAAAAATCTGGTCTT-TAT 1100
Query 1167 GTATGAT-AATGCAAGTTTGTAACCCTTGTACGTATATTGATCTTCTTTACTGTTCTTGA 1225
||||||| || ||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 1101 GTATGATTAA-GCAAGTTTGTAAC--TT-T--GTATATTGATCTTCTTTACTGTTCTTGA 1154
Query 1226 GACTTG 1231
|| |||
Sbjct 1155 GATTTG 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5