BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11820.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928898 jgi|Araly1|928898|scaffold_301355.1 1676 0.0
> Ahg928898 jgi|Araly1|928898|scaffold_301355.1
Length=1073
Score = 1676 bits (907), Expect = 0.0
Identities = 1016/1066 (95%), Gaps = 18/1066 (2%)
Strand=Plus/Plus
Query 236 TTTCGAATTTTAAATGAACGATTTGTTTTCCAGCTCATTCTCTCGCTTCCGCAGCGGAGA 295
|||| ||||||||||||||||||||||||||||||||||||| ||||| | | |||||||
Sbjct 13 TTTC-AATTTTAAATGAACGATTTGTTTTCCAGCTCATTCTCACGCTT-C-C-GCGGAGA 68
Query 296 ACCATCCCCTCGCCGAGACGTTGCCGGCGGTGGCGACGGAGTTCAGATGGCGAATCCCGC 355
|||||||||||||||||||| | |||| || |||||||||||||||||||||||||||||
Sbjct 69 ACCATCCCCTCGCCGAGACGCTCCCGGAGGAGGCGACGGAGTTCAGATGGCGAATCCCGC 128
Query 356 GGGATCAACCGGTGGTGTGAACCTCGACAAGTTCTTCGAAGATGTTGAATCTGTGAAAGA 415
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 129 GGGATCAACCGGTGGTGTGAACCTCGACAAGTTTTTCGAAGATGTTGAATCTGTGAAAGA 188
Query 416 AGAGCTAAAGGAGCTAGATCGGCTCAACGAAACACTCTCTTCATGTCACGAGCAGAGCAA 475
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 189 GGAGTTAAAGGAGCTAGATCGGCTCAACGAAACACTCTCTTCCTGTCACGAGCAGAGCAA 248
Query 476 GACGCTTCACAATGCTAAAGCCGTTAAAGATCTCCGGTCTAAAATGGACGGTGACGTTGG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GACGCTTCACAATGCTAAAGCCGTTAAAGATCTCCGGTCTAAAATGGACGGTGACGTTGG 308
Query 536 AGTCGCGTTGAAGAAGGCGAAGATGATTAAAGTTAAACTCGAGGCGCTAGATCGTGCCAA 595
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 309 AGTCGCGTTGAAGAAGGCGAAGATGATTAAGGTTAAACTCGAGGCGCTAGATCGTGCCAA 368
Query 596 TGCTGCTAATCGGAGTCTCCCTGGCTGTGGACCTGGTTCTTCCTCCGATCGAACCAGGAC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TGCTGCTAATCGGAGTCTCCCTGGCTGTGGACCTGGTTCTTCCTCCGATCGAACCAGGAC 428
Query 656 CTCTGTCCTCAATGGTCTCAGGAAGAAATTGATGGACTCTATGGATAGTTTCAACCGATT 715
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 429 CTCTGTCCTCAATGGTCTCAGGAAGAAATTGAAGGACTCTATGGATAGTTTCAATCGTTT 488
Query 716 GAGGGAGCTTATCTCGTCCGAGTATAGAGAAACTGTACAGAGGAGGTACTTCACCGTCAC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GAGGGAGCTTATCTCGTCCGAGTATAGAGAAACTGTACAGAGGAGGTACTTCACCGTCAC 548
Query 776 CGGCGAGAATCCGGATGAACGAACCCTAGATCGACTGATTTCCACTGGAGAGAGTGAGAG 835
||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 549 CGGCGAGAATCCGGACGAAGGAACCCTAGATCGACTTATTTCAACTGGAGAGAGTGAGAG 608
Query 836 ATTCTTGCAGAAAGCAATACAAGAACAAGGAAGAGGAAGGGTGTTAGACACCATTAACGA 895
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 609 ATTCTTGCAGAAAGCAATACAAGAACAAGGAAGAGGAAGGGTGTTAGATACCATTAACGA 668
Query 896 GATTCAAGAAAGGCATGATGCGGTTAAAGACATTGAGAAGAATCTCAGGGAGCTTCACCA 955
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 GATCCAAGAAAGGCATGATGCGGTTAAAGACATTGAGAAGAATCTCAGGGAGCTTCACCA 728
Query 956 GGTGTTTCTAGACATGGCCGTGCTGGTAGAGCACCAGGGAGCTCAGCTTGATGACATCGA 1015
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GGTGTTTCTAGACATGGCGGTGCTGGTAGAGCACCAGGGAGCTCAGCTTGATGACATCGA 788
Query 1016 GAGTCATGTGGGTCGAGCTAGCTCCTTTATCAGAGGCGGAACTGACCAGCTACAAACCGC 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 789 GAGTCATGTGGGTCGAGCTAGCTCCTTTATCAGAGGCGGAACTGACCAGCTACACACTGC 848
Query 1076 TCGGGTTTACCAGAAGAACACGCGAAAATGGACATGT-ATTGCCATTATTATTCTCATCA 1134
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 849 TCGGGTTTACCAGAAGAACACGCGAAAATGGACATGTTAC-GCCATTATTATTCTCATCA 907
Query 1135 TCATCATAACTGTTGTGGTTCTTGCT-GTTTTAAAACCGTGGAACAACAGCAGTGGCGGC 1193
||||||||| ||||||||||||| || ||||||||||| |||||||| ||| ||
Sbjct 908 TCATCATAATTGTTGTGGTTCTT-CTTGTTTTAAAACCATGGAACAA------TGGAGGT 960
Query 1194 GGCGGCGGTGGTGGTGGTGGGGGTACCACTGGAGGAAGTCAACCAAATTCAGGGACACCA 1253
|| || ||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 961 GGTGG---TGGTGGTGGTGGGGGTAACAGTGGAGGAAATCAACCAAATTCAGGGACACCA 1017
Query 1254 CCAAATCCTCCTCAGGCAAGGCGTCTATTGCGTTGAAGTTGAAGTT 1299
|||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 CCAAGTCCTCCTCAGGCAAGGCGTCTATTGCGTTGAAGTTGA-GTT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5