BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11830.1 Length=1965 Score E Sequences producing significant alignments: (Bits) Value Ahg928899 jgi|Araly1|928899|scaffold_301356.1 2863 0.0 Ahg921348 jgi|Araly1|921348|scaffold_102629.1 255 7e-67 Ahg932067 jgi|Araly1|932067|scaffold_400055.1 254 2e-66 Ahg949962 jgi|Araly1|949962|scaffold_801849.1 237 2e-61 > Ahg928899 jgi|Araly1|928899|scaffold_301356.1 Length=1720 Score = 2863 bits (1550), Expect = 0.0 Identities = 1665/1721 (97%), Gaps = 5/1721 (0%) Strand=Plus/Plus Query 54 ctcttcGTCACGCATCTACAAT--GG-CATCGATGATGCAACCGCAGATCATACTGCTGA 110 |||||| | ||||||||||||| || | ||||||||||||||||||||||||||||| | Sbjct 1 CTCTTCTTTACGCATCTACAATGGGGTCGTCGATGATGCAACCGCAGATCATACTGCTAA 60 Query 111 AGGAAGGGACGGACACATCTCAGGGCAAAGCGCAACTAGTAAGCAACATCAACGCTTGCA 170 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 61 AGGAAGGGACGGACACATCTCAGGGTAAAGCGCAACTAGTGAGCAACATCAACGCTTGCA 120 Query 171 CTGCTGTTGGAGATGTAGTTCGAACCACGCTCGGGCCACGAGGGATGGACAAACTCATTC 230 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGGCTGTTGGAGATGTGGTTCGAACCACGCTCGGGCCACGAGGGATGGACAAACTCATTC 180 Query 231 ACGACGATAAAGGATCCGTCACCATTTCTAACGATGGTGCTACCATCATGAAGCTCCTCG 290 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 ACGACGATAAAGGATCCGTCACCATTTCCAACGATGGTGCTACCATCATGAAGCTCCTCG 240 Query 291 ACATTGTTCATCCTGCTGCTAAGATCCTCGTCGATATCGCCAAATCCCAAGACTCCGAGG 350 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 ACATTGTTCATCCTGCTGCTAAGATCCTCGTCGATATCGCCAAATCCCAAGATTCCGAGG 300 Query 351 TGGGTGATGGGACAACTACAGTGGTTCTTCTTGCAGCAGAGTTTTTGAAGGAAGCGAAGC 410 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 301 TCGGTGATGGGACAACTACAGTGGTTCTTCTTGCAGCAGAGTTTTTGAAGGAAGCTAAGC 360 Query 411 CATTTATTGAGGATGGTGTTCACGCTCAGAATCTAATTAGGAGTTACCGCACTGCAAGCA 470 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 361 CATTTATTGAGGATGGTGTTCACTCTCAGAATCTTATTAGGAGTTACCGCACTGCAAGCA 420 Query 471 CTTTGGCAATTGCCAAGGTTAAAGAACTCGCTGTTAGCATTGAGGGGAAGAGTGTAGAGG 530 ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 421 CTTTGGCAATTGCGAAGGTTAAAGAACTCGCTGTTAGTATTGAGGGGAAGAGTATAGAGG 480 Query 531 AAAAGAAAGGTTTATTGGCTAAATGTGCTGCTACGACTCTCTCATCTAAGCTTATCGGTG 590 ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 481 AAAAGAAAGGTTTGTTGGCTAAATGTGCTGCTACTACTCTTTCATCTAAGCTTATCGGTG 540 Query 591 GAGAAAAGGAGTTTTTTGCTACAATGGTTGTTGATGCTGTTATGGCCATTGGGAATGACG 650 |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| Sbjct 541 GAGAAAAGGAGTTTTTTGCTACAATGGTTGTTAATGCTGTGATGGCGATTGGGAATGACG 600 Query 651 ACAGGCTAAATCTGATTGGGATCAAGAAGGTTCCTGGTGGCAATATGCGAGACTCTTTCC 710 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ACAGGCTAAATCTTATTGGGATCAAGAAGGTTCCTGGTGGCAATATGCGAGACTCTTTCC 660 Query 711 TCGTTGATGGTGTAGCTTTCaaaaaaaCATTCTCGTATGCTGGTTTTGAGCAACAGCCAA 770 ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct 661 TCGTTGATGGTGTAGCTTTCAAAAAGACATTCTCATATGCAGGTTTTGAGCAACAGCCAA 720 Query 771 AGAAATTTCTTAACCCCAAAATTCTCTTGCTTAACATCGAATTGGAGTTGAAATCTGAGA 830 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AAAAATTTCTTAACCCCAAAATTCTCTTGCTTAACATCGAATTGGAGTTGAAATCTGAGA 780 Query 831 AGGAAAACGCTGAAATTAGGCTGTCAGATCCATCACAGTACCAGTCAATAGTTGATGCAG 890 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 781 AGGAAAACGCTGAAATTAGGCTGTCAGATCCATCGCAGTACCAGTCAATAGTTGATGCAG 840 Query 891 AATGGAATATCATTTATGACAAACTAGACAAATGTGTTGAGAGTGGAGCAAAAGTTGTTC 950 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 841 AATGGAATATCATTTATGACAAGCTAGACAAATGTGTTGAGAGTGGAGCAAAAGTTGTTC 900 Query 951 TTTCTCGATTGGCTATTGGTGATCTAGCTACTCAGTATTTTGCCGATCGTGATATTTTCT 1010 ||||| |||||||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 901 TTTCTAGATTGGCTATCGGAGATCTAGCTACTCAGTATTTTGCGGATCGTGATATTTTCT 960 Query 1011 GTGCTGGTCGTGTTGCTGAGGAAGATCTTAACCGTGTGGCTGCTGCAGCTGGAGGAACAG 1070 ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 961 GTGCTGGTCGTGTGGCAGAGGAAGATCTTAACCGTGTGGCTGCTGCAGCTGGCGGAACAG 1020 Query 1071 TTCAGACAAGTGTTAACAACATAATAGATGAGGTTCTTGGAACTTGTGAGATTTTTGAGG 1130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTCAGACAAGTGTTAACAACATAATAGATGAGGTTCTTGGAACTTGTGAGATTTTTGAGG 1080 Query 1131 AAAAACAAGTTGGTGGGGAGAGATTTAATATATTCAGTGGTTGCCCTTCAGGACGA-ACA 1189 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| Sbjct 1081 AAAAACAAGTTGGTGGGGAGAGGTTTAATATATTCAGTGGTTGCCCTTCAGGAC-ATACA 1139 Query 1190 GCAACTATTGTTCTCCGTGGTGGAGCTGATCAGTTCATCGAAGAAGCTGAGCGGAGTTTA 1249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 GCAACTATTGTTCTCCGTGGTGGAGCTGATCAGTTCATCGAAGAAGCTGAGCGGAGTTTA 1199 Query 1250 CATGATGCGATTATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGT 1309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CATGATGCGATTATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGT 1259 Query 1310 GGAGCTATAGATATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGG 1369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 GGAGCTATAGATATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGG 1319 Query 1370 AAGTCACAGCTTTTCATCAACTCTTATGCGAAGGCTCTAGAGGTTATTCCACGACAGTTA 1429 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1320 AAGTCACAGCTTTTCATCAACTCTTATGCGAAGGCTCTGGAGGTTATTCCACGACAGTTA 1379 Query 1430 TGTGATAATGCTGGATTTGATGCAACTGACGTCTTGAATAAACTTAGACAAAAACACGCC 1489 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 TGTGACAATGCTGGATTTGATGCAACTGACGTCTTGAATAAACTTAGACAAAAACACGCT 1439 Query 1490 ATGCAAAGCGGTGAAGGAGCTTCGTATGGAGTGGACATTAACACTGGTGGCATAGCAGAT 1549 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1440 ATGCAAAGCGGTGAAGGAGCTTCGTATGGAGTGGACATTAACACTGGTGGCATATCAGAT 1499 Query 1550 TCTTTTGCTAACTTCGTTTGGGAACCAGCAGTTGTGAAGATCAACGCAATAAATGCTGCG 1609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 TCTTTTGCTAACTTCGTTTGGGAACCAGCAGTTGTGAAGATCAACGCAATAAATGCTGCG 1559 Query 1610 ACTGAAGCGGCTTGCCTCATTCTTAGTGTCGACGAAACCGTGAAGAACCCTAAATCTGAG 1669 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1560 ACTGAAGCGGCTTGCCTCATTCTTAGTGTGGACGAAACTGTGAAGAACCCTAAATCTGAG 1619 Query 1670 AGCGCACAGGGAGACGCCGCAGGTGCAATGGGGAGAGGACGCGGTGGAGGTCGTGGCCGT 1729 |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| Sbjct 1620 AGCGCACAGGGAGACGCCGCAGGTGCAATGGGGAGAGGGCGCGGTGGAGGCCGAGGCCGT 1679 Query 1730 GGAATGCGAAGGCGATAAGCTCCGTCTCTAATGCCAAACTT 1770 ||||||||||||||||| |||| |||||| |||| |||||| Sbjct 1680 GGAATGCGAAGGCGATAGGCTCTGTCTCTTATGCTAAACTT 1720 > Ahg921348 jgi|Araly1|921348|scaffold_102629.1 Length=218 Score = 255 bits (138), Expect = 7e-67 Identities = 146/150 (97%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1262 ATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGTGGAGCTATAGAT 1321 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 24 ATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTAGAGGTGGAGCTATAGAT 83 Query 1322 ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGGAAGTCACAGCTT 1381 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 84 ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACTATTGCTTGGAAGTCACAGCTT 143 Query 1382 TTCATCAACTCTTATGCGAAGGCTCTAGAG 1411 |||||||||||||||||||||||||| ||| Sbjct 144 TTCATCAACTCTTATGCGAAGGCTCTGGAG 173 > Ahg932067 jgi|Araly1|932067|scaffold_400055.1 Length=360 Score = 254 bits (137), Expect = 2e-66 Identities = 147/152 (97%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1262 ATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGTGGAGCTATAGAT 1321 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 90 ATGATTGTGAGAAGAGCTATGAAGAACTCAACTGTTGTTCCTAGAGGTGGAGCTATAGAT 149 Query 1322 ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGGAAGTCACAGCTT 1381 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 150 ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACTATTGCTTGGAAGTCACAGCTT 209 Query 1382 TTCATCAACTCTTATGCGAAGGCTCTAGAGGT 1413 |||||||||||||||||||||||||| ||||| Sbjct 210 TTCATCAACTCTTATGCGAAGGCTCTGGAGGT 241 > Ahg949962 jgi|Araly1|949962|scaffold_801849.1 Length=315 Score = 237 bits (128), Expect = 2e-61 Identities = 136/140 (97%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1274 AGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGTGGAGCTATAGATATGGAGATAAGC 1333 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 57 AGAGCTGTGAAGAACTCAACTGTTGTTCCTAGAGGTGGAGCTATAGATATGGAGATAAGC 116 Query 1334 AAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGGAAGTCACAGCTTTTCATCAACTCT 1393 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 117 AAGTACCTGAGGCAGCATTCAAGAACTATTGCTTGGAAGTCACAGCTTTTCATCAACTCT 176 Query 1394 TATGCGAAGGCTCTAGAGGT 1413 |||||||||||||| ||||| Sbjct 177 TATGCGAAGGCTCTGGAGGT 196 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73856985055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5