BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11830.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928899 jgi|Araly1|928899|scaffold_301356.1 2863 0.0
Ahg921348 jgi|Araly1|921348|scaffold_102629.1 255 7e-67
Ahg932067 jgi|Araly1|932067|scaffold_400055.1 254 2e-66
Ahg949962 jgi|Araly1|949962|scaffold_801849.1 237 2e-61
> Ahg928899 jgi|Araly1|928899|scaffold_301356.1
Length=1720
Score = 2863 bits (1550), Expect = 0.0
Identities = 1665/1721 (97%), Gaps = 5/1721 (0%)
Strand=Plus/Plus
Query 54 ctcttcGTCACGCATCTACAAT--GG-CATCGATGATGCAACCGCAGATCATACTGCTGA 110
|||||| | ||||||||||||| || | ||||||||||||||||||||||||||||| |
Sbjct 1 CTCTTCTTTACGCATCTACAATGGGGTCGTCGATGATGCAACCGCAGATCATACTGCTAA 60
Query 111 AGGAAGGGACGGACACATCTCAGGGCAAAGCGCAACTAGTAAGCAACATCAACGCTTGCA 170
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 61 AGGAAGGGACGGACACATCTCAGGGTAAAGCGCAACTAGTGAGCAACATCAACGCTTGCA 120
Query 171 CTGCTGTTGGAGATGTAGTTCGAACCACGCTCGGGCCACGAGGGATGGACAAACTCATTC 230
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGCTGTTGGAGATGTGGTTCGAACCACGCTCGGGCCACGAGGGATGGACAAACTCATTC 180
Query 231 ACGACGATAAAGGATCCGTCACCATTTCTAACGATGGTGCTACCATCATGAAGCTCCTCG 290
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 ACGACGATAAAGGATCCGTCACCATTTCCAACGATGGTGCTACCATCATGAAGCTCCTCG 240
Query 291 ACATTGTTCATCCTGCTGCTAAGATCCTCGTCGATATCGCCAAATCCCAAGACTCCGAGG 350
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ACATTGTTCATCCTGCTGCTAAGATCCTCGTCGATATCGCCAAATCCCAAGATTCCGAGG 300
Query 351 TGGGTGATGGGACAACTACAGTGGTTCTTCTTGCAGCAGAGTTTTTGAAGGAAGCGAAGC 410
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TCGGTGATGGGACAACTACAGTGGTTCTTCTTGCAGCAGAGTTTTTGAAGGAAGCTAAGC 360
Query 411 CATTTATTGAGGATGGTGTTCACGCTCAGAATCTAATTAGGAGTTACCGCACTGCAAGCA 470
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 361 CATTTATTGAGGATGGTGTTCACTCTCAGAATCTTATTAGGAGTTACCGCACTGCAAGCA 420
Query 471 CTTTGGCAATTGCCAAGGTTAAAGAACTCGCTGTTAGCATTGAGGGGAAGAGTGTAGAGG 530
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 421 CTTTGGCAATTGCGAAGGTTAAAGAACTCGCTGTTAGTATTGAGGGGAAGAGTATAGAGG 480
Query 531 AAAAGAAAGGTTTATTGGCTAAATGTGCTGCTACGACTCTCTCATCTAAGCTTATCGGTG 590
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 481 AAAAGAAAGGTTTGTTGGCTAAATGTGCTGCTACTACTCTTTCATCTAAGCTTATCGGTG 540
Query 591 GAGAAAAGGAGTTTTTTGCTACAATGGTTGTTGATGCTGTTATGGCCATTGGGAATGACG 650
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 541 GAGAAAAGGAGTTTTTTGCTACAATGGTTGTTAATGCTGTGATGGCGATTGGGAATGACG 600
Query 651 ACAGGCTAAATCTGATTGGGATCAAGAAGGTTCCTGGTGGCAATATGCGAGACTCTTTCC 710
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAGGCTAAATCTTATTGGGATCAAGAAGGTTCCTGGTGGCAATATGCGAGACTCTTTCC 660
Query 711 TCGTTGATGGTGTAGCTTTCaaaaaaaCATTCTCGTATGCTGGTTTTGAGCAACAGCCAA 770
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 661 TCGTTGATGGTGTAGCTTTCAAAAAGACATTCTCATATGCAGGTTTTGAGCAACAGCCAA 720
Query 771 AGAAATTTCTTAACCCCAAAATTCTCTTGCTTAACATCGAATTGGAGTTGAAATCTGAGA 830
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAAAATTTCTTAACCCCAAAATTCTCTTGCTTAACATCGAATTGGAGTTGAAATCTGAGA 780
Query 831 AGGAAAACGCTGAAATTAGGCTGTCAGATCCATCACAGTACCAGTCAATAGTTGATGCAG 890
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 781 AGGAAAACGCTGAAATTAGGCTGTCAGATCCATCGCAGTACCAGTCAATAGTTGATGCAG 840
Query 891 AATGGAATATCATTTATGACAAACTAGACAAATGTGTTGAGAGTGGAGCAAAAGTTGTTC 950
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 AATGGAATATCATTTATGACAAGCTAGACAAATGTGTTGAGAGTGGAGCAAAAGTTGTTC 900
Query 951 TTTCTCGATTGGCTATTGGTGATCTAGCTACTCAGTATTTTGCCGATCGTGATATTTTCT 1010
||||| |||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 TTTCTAGATTGGCTATCGGAGATCTAGCTACTCAGTATTTTGCGGATCGTGATATTTTCT 960
Query 1011 GTGCTGGTCGTGTTGCTGAGGAAGATCTTAACCGTGTGGCTGCTGCAGCTGGAGGAACAG 1070
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 GTGCTGGTCGTGTGGCAGAGGAAGATCTTAACCGTGTGGCTGCTGCAGCTGGCGGAACAG 1020
Query 1071 TTCAGACAAGTGTTAACAACATAATAGATGAGGTTCTTGGAACTTGTGAGATTTTTGAGG 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCAGACAAGTGTTAACAACATAATAGATGAGGTTCTTGGAACTTGTGAGATTTTTGAGG 1080
Query 1131 AAAAACAAGTTGGTGGGGAGAGATTTAATATATTCAGTGGTTGCCCTTCAGGACGA-ACA 1189
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 1081 AAAAACAAGTTGGTGGGGAGAGGTTTAATATATTCAGTGGTTGCCCTTCAGGAC-ATACA 1139
Query 1190 GCAACTATTGTTCTCCGTGGTGGAGCTGATCAGTTCATCGAAGAAGCTGAGCGGAGTTTA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCAACTATTGTTCTCCGTGGTGGAGCTGATCAGTTCATCGAAGAAGCTGAGCGGAGTTTA 1199
Query 1250 CATGATGCGATTATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGT 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CATGATGCGATTATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGT 1259
Query 1310 GGAGCTATAGATATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGG 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGAGCTATAGATATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGG 1319
Query 1370 AAGTCACAGCTTTTCATCAACTCTTATGCGAAGGCTCTAGAGGTTATTCCACGACAGTTA 1429
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1320 AAGTCACAGCTTTTCATCAACTCTTATGCGAAGGCTCTGGAGGTTATTCCACGACAGTTA 1379
Query 1430 TGTGATAATGCTGGATTTGATGCAACTGACGTCTTGAATAAACTTAGACAAAAACACGCC 1489
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGTGACAATGCTGGATTTGATGCAACTGACGTCTTGAATAAACTTAGACAAAAACACGCT 1439
Query 1490 ATGCAAAGCGGTGAAGGAGCTTCGTATGGAGTGGACATTAACACTGGTGGCATAGCAGAT 1549
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1440 ATGCAAAGCGGTGAAGGAGCTTCGTATGGAGTGGACATTAACACTGGTGGCATATCAGAT 1499
Query 1550 TCTTTTGCTAACTTCGTTTGGGAACCAGCAGTTGTGAAGATCAACGCAATAAATGCTGCG 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCTTTTGCTAACTTCGTTTGGGAACCAGCAGTTGTGAAGATCAACGCAATAAATGCTGCG 1559
Query 1610 ACTGAAGCGGCTTGCCTCATTCTTAGTGTCGACGAAACCGTGAAGAACCCTAAATCTGAG 1669
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1560 ACTGAAGCGGCTTGCCTCATTCTTAGTGTGGACGAAACTGTGAAGAACCCTAAATCTGAG 1619
Query 1670 AGCGCACAGGGAGACGCCGCAGGTGCAATGGGGAGAGGACGCGGTGGAGGTCGTGGCCGT 1729
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1620 AGCGCACAGGGAGACGCCGCAGGTGCAATGGGGAGAGGGCGCGGTGGAGGCCGAGGCCGT 1679
Query 1730 GGAATGCGAAGGCGATAAGCTCCGTCTCTAATGCCAAACTT 1770
||||||||||||||||| |||| |||||| |||| ||||||
Sbjct 1680 GGAATGCGAAGGCGATAGGCTCTGTCTCTTATGCTAAACTT 1720
> Ahg921348 jgi|Araly1|921348|scaffold_102629.1
Length=218
Score = 255 bits (138), Expect = 7e-67
Identities = 146/150 (97%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 1262 ATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGTGGAGCTATAGAT 1321
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 24 ATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTAGAGGTGGAGCTATAGAT 83
Query 1322 ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGGAAGTCACAGCTT 1381
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 84 ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACTATTGCTTGGAAGTCACAGCTT 143
Query 1382 TTCATCAACTCTTATGCGAAGGCTCTAGAG 1411
|||||||||||||||||||||||||| |||
Sbjct 144 TTCATCAACTCTTATGCGAAGGCTCTGGAG 173
> Ahg932067 jgi|Araly1|932067|scaffold_400055.1
Length=360
Score = 254 bits (137), Expect = 2e-66
Identities = 147/152 (97%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 1262 ATGATTGTGAGAAGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGTGGAGCTATAGAT 1321
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 90 ATGATTGTGAGAAGAGCTATGAAGAACTCAACTGTTGTTCCTAGAGGTGGAGCTATAGAT 149
Query 1322 ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGGAAGTCACAGCTT 1381
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 150 ATGGAGATAAGCAAGTACCTGAGGCAGCATTCAAGAACTATTGCTTGGAAGTCACAGCTT 209
Query 1382 TTCATCAACTCTTATGCGAAGGCTCTAGAGGT 1413
|||||||||||||||||||||||||| |||||
Sbjct 210 TTCATCAACTCTTATGCGAAGGCTCTGGAGGT 241
> Ahg949962 jgi|Araly1|949962|scaffold_801849.1
Length=315
Score = 237 bits (128), Expect = 2e-61
Identities = 136/140 (97%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1274 AGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGTGGAGCTATAGATATGGAGATAAGC 1333
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 57 AGAGCTGTGAAGAACTCAACTGTTGTTCCTAGAGGTGGAGCTATAGATATGGAGATAAGC 116
Query 1334 AAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGGAAGTCACAGCTTTTCATCAACTCT 1393
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 117 AAGTACCTGAGGCAGCATTCAAGAACTATTGCTTGGAAGTCACAGCTTTTCATCAACTCT 176
Query 1394 TATGCGAAGGCTCTAGAGGT 1413
|||||||||||||| |||||
Sbjct 177 TATGCGAAGGCTCTGGAGGT 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5