BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11840.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341304 jgi|Araly1|341304|fgenesh1_pg.C_scaffold_3001067 2104 0.0
> Ahg341304 jgi|Araly1|341304|fgenesh1_pg.C_scaffold_3001067
Length=1392
Score = 2104 bits (1139), Expect = 0.0
Identities = 1288/1360 (95%), Gaps = 9/1360 (1%)
Strand=Plus/Plus
Query 50 ATGGATCAAGAAGAGGAAGAGATCGAGATTCCTAATTACTTTATCTGCCCAATCTCACTA 109
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCATGAAGAGGAAGAGATCGAGATTCCTAATTACTTTATCTGCCCAATCTCACTT 60
Query 110 GAGATCATGAAAGATCCAGTCACGACCGTTTCTGGCATCACTTACGACCGTCAAAACATC 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GAGATCATGAAAGATCCAGTCACGACCGTTTCTGGCATCACTTACGACCGTCAAAGCATC 120
Query 170 GTTAAATGGCTCGAAAAGGTCCCTTCTTGTCCCGTCACGAAGCAACCTCTTCCCTTAGAC 229
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GTTAAATGGCTCAAAAAGGTCCCTTCTTGTCCTGTCACGAAGCAACCTCTTCCCTTAGAC 180
Query 230 TCCGATCTTACACCTAACCACATGCTTCGCCGTCTTATCCAACACTGGTGCGTCGAGAAC 289
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 181 TCCGATCTTACACCTAACCACATGCTTCGCCGTCTGATCCAACATTGGTGCGTTGAGAAC 240
Query 290 GAGACACGTGGCGTTGTCAGAATCTCTACACCTCGAGTTCCTCCTGGAAAACTTAACGTC 349
||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 241 GAGACTCGTGGCGTTGTCAGAATCTCTACTCCTCGAGCTCCTCTTGGAAAACTTAACGTC 300
Query 350 GTCGAAGAGATCAAGAATCTCAAAAAGTTCGGCCAAGAAGCCTTAGGAAGAGAAGAAACG 409
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 GTCGAGGAGATCAAGAATCTCAAAAGGTTCGGCCAAGAAGCCTTAGGAAGAGAAGAAACG 360
Query 410 TTGCAGAAGCTTGAAGTTTTGGCAATGGACGGAAATAACAGAAGATTGATGTGTGAATGT 469
||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
Sbjct 361 TTGCAGAAGCTTGAAGTTTTGGCAATGGAGGGAAATAACAGGAGATTGATGTTTGAAGGA 420
Query 470 GGCGTACATAAGTCTTTGATCTTGTTCGTAGTCAAGTGTACTAGTGAAGACGAAGACGGA 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GGCGTACATAAGTCTTTGATCTTGTTCGTAGTCAAGTGTACTAGTGAAGACGAAGAGGGA 480
Query 530 CGACGTCGTATCAAAGGACTAGATGAGTCTCTTCGTCTTCTTCACTTGATCGGTATTCCA 589
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 CGACGTCGTATCAAAGGGCTAGATGAGTCTCTTCGTCTTCTTCACTTGATCGGTGTTCCA 540
Query 590 TCAAACGACGCAAAAACAATCTTGATGGAAAACGATCGAGTTATGGAATCGTTGACTTGG 649
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 541 TCAAACGACGCAAAAACAATTTTGATCGAAAACGATCGAGTCATGGAATCGTTGACTTGG 600
Query 650 GTTTTACACCAAGAAGACTTTCTCAGTAAGGCTTATACAATTGTGCTATTGAGGAATCTA 709
|||||||||||||||||||| ||| ||||||||||||||||||| | || | |||||||
Sbjct 601 CTTTTACACCAAGAAGACTTTTTCAATAAGGCTTATACAATTGTGATCTTAAAGAATCTA 660
Query 710 ACGGAATACACTTCCTCTCATATCGTAGAGAGATTGAATCCCGAGATTTTTAAAGGGATC 769
| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGGAACACACTTCCTCTCATATTGTAGAGAGATTGAATCCCGAGATTTTTAAAGGGATC 720
Query 770 ATAGGGTTTCTCAAGGATGTTGTAAATAGTGTTAATCGGACGAGCCCTACCGTGAGAGAA 829
|||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 721 ATAGAGTTTCTCAAGGATGTAGTAAGCAGTCTTAATCGGACGAGCCCTACCGTGAGAGAT 780
Query 830 ACGGTACAGTCATCATCAAGGCCTAGCTT-GGGAAAAACGGAACCATCAAAACTTGATCA 888
|||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 781 ACGGTACA---ATCATCAAGGCCTAGCTTGGGGAAAAA-GGAACCATCAAAACTTGATCA 836
Query 889 TAGTTTGGTCATCAAACAAGCGGTGACTGCCGCGCTGATGATTCTTTTAGAGACTTCTTC 948
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 TAGTTTGGTCATTAAACAAGCGGTGACTGCAGCGCTGATGATTCTTTTAGAGACTTCTTC 896
Query 949 GTGGAGCCGAAACCGATC-ACTCCTTGTGGATCTCGGTGCGGTTTCTGAACTCATCGAAC 1007
|||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 897 GTGGAGCCGAAACCGATCGA-TCCTTGTGGATCTCGATGCGGTTTCTGAACTCATCGAAC 955
Query 1008 TCGAAATAAGCTACACTGGCGAGAAAAGAATCACAGAACTTATGTTAGGAGTTTTATCTC 1067
| ||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 956 TGGAAATGAGCTACTCAGGCGAGAAAAGAATCACAGAACTTATGTTAGGAGTTTTGTCTC 1015
Query 1068 GTTTATGTTGCTGTGCGAACGGTAGAGCCGAGATTCTTGCTCATAGGGGCGGAATCGCGG 1127
|||||||||| || || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1016 GTTTATGTTGTTGCGCCAACGGTAGAGCCGAGATTCTTTCTCATAGGGGCGGAATCGCGG 1075
Query 1128 TTGTGACAAAGCGGCTATTGAGGGTTTCACCTGCGGCAGACGATAGAGCTATCTCTATCC 1187
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1076 TTGTGACGAAGCGGCTATTGAGGGTTTCACCTGCAGCAGACGATAGAGCTATCTCTATCC 1135
Query 1188 TAACTACAGTGTCAAAATTCTCGCCGGAAAACATGGTGGTGGAAGAGATGGTTAATGTTG 1247
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1136 TAAGTACAGTGTCAAAATTCTCGCCGGAAAACATGGTGGTGGAAGAGATGGTAAACGTTG 1195
Query 1248 GGACGGTAGAGAAGCTCTGTTCCGTTCTAGGAATGGATTGTGGTTTGAACTTGAAGGAGA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GGACGGTAGAGAAGCTCTGTTCCGTTCTAGGAATGGATTGTGGTTTGAACTTGAAGGAGA 1255
Query 1308 AAGCAAAAGAGATACTAAAAGATCATTTTGATGAGTGGAAGAAGTTTCCATGTATTGACA 1367
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1256 AAGCAAAAGATATACTTAAAGATCATTTTGATGAGTGGAAGAAGTTTCCGTGTATCGACA 1315
Query 1368 TAACTCTTCTCACTAAGCTGCTAAGCATC-TCACCCAAAG 1406
||||||||||||||||||| |||||| || ||||||||||
Sbjct 1316 TAACTCTTCTCACTAAGCTTCTAAGC-TCCTCACCCAAAG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5