BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11850.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478531 jgi|Araly1|478531|fgenesh2_kg.3__1232__AT3G11850.2 2645 0.0
Ahg487466 jgi|Araly1|487466|fgenesh2_kg.6__600__AT5G06560.1 747 0.0
> Ahg478531 jgi|Araly1|478531|fgenesh2_kg.3__1232__AT3G11850.2
Length=2278
Score = 2645 bits (1432), Expect = 0.0
Identities = 1716/1848 (93%), Gaps = 39/1848 (2%)
Strand=Plus/Plus
Query 120 GAATCTTGGAATTGGGAATGGAATCTCCGATCAAATGTTGCGACTGTGGATGCGATTGTT 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 455 GAATCTTGGAATTGGGAATGGAGTCTCCGATCAAATGTTGCGACTGTGGATGCGATTGTT 514
Query 180 GTTCTTCCTCCCCTGGTTCATGGATTCGATCTGTGAAGAAGAGAAGACACGACGAATTAC 239
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 515 GTTCTTCCT---CAGGTTCATGGATTCGATCTGTGAAGAAGAGAAGACACGATGAATTAC 571
Query 240 AGACCGAGAAACGATTCTCGATACCGGAGCTGGACGACCTAGACATGTTCTCTAATCCTA 299
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 572 AGACCGAGAAACGATTCTCTATACCGGAGCTGGATGACCTAGACATGTTCTCTAATCCTA 631
Query 300 GAGTCCAAATTGAGAACGAATGTGAATTACTACGCGAGACTGTTAGCAATCAACAGCAAA 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GAGTCCAAATCGAGAACGAATGTGAATTACTACGCGAGACTGTTAGCAATCAACAGCAAA 691
Query 360 CGATTCAGGATTTGTATCATGAGCTTGAGCAAGAGCGTATTGCTTCATCAACTGCTGCAG 419
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| ||
Sbjct 692 CGATTCAGGATTTGTATCATGAGCTCGAGGAAGAGCGTATTGCTTCATCAACAGCTGTAG 751
Query 420 ATGAAACAGTAAAGATGATTCAGACGTTGGAGCGTGAAAAAG-CAAAAATCGACT--TGG 476
||||| || | || ||||| || |||| || | ||||| | | || | || |||
Sbjct 752 ATGAAGCACTGAATCTGATTGGGAAGTTGCAG-AAGGAAAAGACTGATAT-G-CTGATGG 808
Query 477 AACTGAAACAGCTTCAGCGTAGTGTTGACGAAACATTGAATTATGAAAAC-CAAGAGATT 535
|||||| ||||||||||||| ||||| | || | ||||| |||||||||| | |||||||
Sbjct 809 AACTGACACAGCTTCAGCGTTGTGTTAAGGACAGATTGACTTATGAAAACGC-AGAGATT 867
Query 536 GAGGCATTGGAAAATATGGTTTATCAAAGGGATCAGACGATTCAGGCTCTTACGTTTGAA 595
|||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 868 GAGGCATTGGAAGCTGTGGTTTATCAAAGGGATCAGACGATTCAGGCTCTTACATTTGAA 927
Query 596 ACTCAGGCTTATAAGCACAGAATGATGAGTTTTGGGCTAACCGAAGCAGAAGCTGATGGT 655
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 928 ACTCAGGCTTATAAGCACAGAATGATGAGCTTTGGGCTAACCGAGGCAGAAGCTGATGGT 987
Query 656 GAGAGGAGCTTGCTTAGTCGTAACCCGAGCATGATCGACTTTAGTTCTGAATATGACTGC 715
||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| | |
Sbjct 988 GAGAGGAGCTTGCTTAGTCGTAACCCGAGCATGGTCGACATTAATTCTGAATATGATTTC 1047
Query 716 CCTACACAAGATTACCCTCCTCTTAAA-TGCAATATTAATGAGAACCAAGACCCTCTTGA 774
|||| || ||||||||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 1048 CCTATACCTGATTACCCTCCTC-TAAAGTGCAATATTAATGAGAACCAAGATCCTCTTGA 1106
Query 775 GGCTGATATCTATGTTGCAGATGATGAGAACTATCCACCAGCTGATTCTCCTCATGGGA- 833
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||
Sbjct 1107 GGCTGATATCTATGTTGCAGATGATGAAAACTACCCACCAGCTGATTCCCCTCAT-GGAC 1165
Query 834 GAGTACATTTAAAGACTTTGGATCGAAGACTCAGCCAGATGGAGACGA-ATCCTAGCTTT 892
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1166 GAGAACATTTAAAGACTTTGGATCGAAGACTCAGCCAGATGGAGAC-ATATCCTAGCTTT 1224
Query 893 ACTCAGTTGAATAGAGGGAGGGATGTTTCAGAGAAGGGGATGGTTGGTGAGAGTCCTAGG 952
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||
Sbjct 1225 ACTCAGTTGAATAGAGGGAGAGATGTTTCAGAGAAGTCAATGGTTGGTCAGAGTCCTAGG 1284
Query 953 CGTCAAAGACATTTTAGGAGGATTTCCCCTACTGGTTCATCAAGTTCACACTTGGGAGCA 1012
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1285 CGTCAAAGACATTTTAGGAGGATTTCCCCTACTGG-T--TCAAGTTCACACTTGGGAGCA 1341
Query 1013 TCTAAAGAACTAAGACCTGATGTTTTTGTTGATTCCCCGAGGTCCCAAAGCTACAGCTCT 1072
|||||||||||||||| ||||| |||||||||||||||||||||| ||||| | |
Sbjct 1342 TCTAAAGAACTAAGACGTGATGCTTTTGTTGATTCCCCGAGGTCCGGAAGCT--A---C- 1395
Query 1073 AAGAAAATGGAAGATGTCTCGTATACAGAGAATAATAATGCTAAAGATGACTTGTCGGAA 1132
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||
Sbjct 1396 AAGAAAATGGAAGATGTCTCATATACAGAGAATAATAATGCTAAAGCCGACTCATCGGAA 1455
Query 1133 ATAGGAGATGACATGAGTGATAGAGTTTATACCATTGATTCTGTTCATCACAGCAGTGTG 1192
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1456 ATAGGAGATGACATGAGTGATAGAGTTTATACCATTGATTCTGTCCATCACAGCAGTGTG 1515
Query 1193 GCTCATAGTGGCGGTGTAGCGGAGCAGAAGATTGAGGATGGTGCTTCTGATGGCAATGTT 1252
|||||||||| |||||| | ||||||||| |||||||||| ||||||||||||||||
Sbjct 1516 TCTCATAGTGGTGGTGTAACTGAGCAGAAGCTTGAGGATGGCACTTCTGATGGCAATGTG 1575
Query 1253 GTTTTCCCGAGAGAACACACGGATCTTGGTGATCCTGATATAACGAAACTCTACATGAGG 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 GTTTTCCCGAGAGAACACACGGATCTTGGTGATCCTGATATAACGAAACTCTACATGAGG 1635
Query 1313 CTTCAAGCACTGGAGGCTGACAGGGAATCAATGAAACATGCGCTTCTCTCTATGAGGACT 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 CTTCAAGCACTGGAGGCTGACAGGGAATCAATGAAACATGCGCTTCTCTCTATGAGGACT 1695
Query 1373 GAAAAGGCTCAAATGGTACTGTTGAAAGAAATTGCTCAACACTTGTCAAAGGAAGTTGTC 1432
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1696 GAAAAGGCTCAAATGGTACTGTTGAAAGAAATTGCTCAACATTTGTCAAAGGAAGTTGTC 1755
Query 1433 CCTCAACGGAGATTGCCTCTACGTAAAGCATCTATTGCTGGGCCATTGACTTTTACGCCG 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1756 CCTCAACGGAGATTGCCTCTACGTAAAGCATCTATTGCTGGGCCATTGACTTTCACGCCG 1815
Query 1493 GTCTTTAAGTGGATCACATCTTTTGTTTCCTGGAAAAGAAAGGCTCGTCGAAGCAAATAC 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 GTCTTTAAGTGGATCACATCTTTTGTTTCCTGGAAAAGAAAGGCTCGTCGAAGCAAATAC 1875
Query 1553 ATGTATGGGATGTCAGGAAACAACATCGGCTTGCAAATGCTTCTAGAAAAAGTCCCTCGG 1612
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1876 ATGTTTGGAATGTCAGGAAACAACATCGGCTTGCAAATGCTTCTAGAAAAAGTCCCTCGG 1935
Query 1613 TCAAGGAAATGGCGATGTCTTAGGAGCACGCAAGTGTGAAACAGATCCAATCC-TTTCAA 1671
||| | |||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1936 TCACGAAAATGGCGATGTCTTAGGAGCACGCAAGTGTGAAACAGATAAAAACCATTTCAA 1995
Query 1672 GCCAACAAAATCACTCTCCTGACTCTAGA-TTCGAAGCACATAATGTCAAATACTGATG- 1729
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1996 GCAAACAAAATCACTCTCCTGACTCTAGAATTCGAAGCACATAATGTCAAATACTGATGG 2055
Query 1730 -TGGGATTGGCGAGGTAACATTTGTC-GGCCTTTCTTCAACTTGAATTGGATTCTCGTTC 1787
| |||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 2056 ATTGGATTG-CGAGGTAACATTTGTGTGGC-TTTCTTCAACTTGAATTGGATTCTCGTTC 2113
Query 1788 TTGGGTTGCAGAGAAAATGTATTTGCTGTGCGA-TTTTCAATCTGTTTTCC-TCAATATT 1845
|||||||||||| ||||||||| || ||||| | ||||||||| ||||||| | ||||||
Sbjct 2114 TTGGGTTGCAGAAAAAATGTATGTGATGTGC-ACTTTTCAATCGGTTTTCCCT-AATATT 2171
Query 1846 TTAACTGTTGTATAAAAGAATTGGGTTGAAGAATGATATAACTCAGAGGCTATACAATCT 1905
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2172 TCAACTATTGTATAAAAGAATTGGGTTGAAGAATGATATAACTCAGAGGCTATACAATCT 2231
Query 1906 TTGTATGGTTTCTAACATGAATTGTTTCATTCATGGATTCt-tttttc 1952
|||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 2232 TTGTATGGTTTCTAACATAAATTGTTTCATTCATGGATT-TGTTTTTC 2278
Score = 137 bits (74), Expect = 2e-31
Identities = 110/126 (87%), Gaps = 8/126 (6%)
Strand=Plus/Plus
Query 1 TGTTTCTCTGTTTCGTGGACGGGAGACAAAA-T-TCTCTC-C-AATTTCTGGGTCGCCAA 56
||||||||||||||||||| ||||||||||| | |||||| | |||||||||||||||||
Sbjct 261 TGTTTCTCTGTTTCGTGGAGGGGAGACAAAATTCTCTCTCTCGAATTTCTGGGTCGCCAA 320
Query 57 GGGAATTGGCTTCAGCTGGAttttttttttttttttttCC-TGAGAA-GCTTCCGATGAT 114
||||||||||||||||||||||||||| |||| | || | | || | ||||||||||
Sbjct 321 GGGAATTGGCTTCAGCTGGATTTTTTTGTTTTATCAA-CCGT-ATAAAGTTTCCGATGAT 378
Query 115 TTAGGG 120
||||||
Sbjct 379 TTAGGG 384
> Ahg487466 jgi|Araly1|487466|fgenesh2_kg.6__600__AT5G06560.1
Length=2219
Score = 747 bits (404), Expect = 0.0
Identities = 1183/1538 (77%), Gaps = 138/1538 (9%)
Strand=Plus/Plus
Query 194 GGTTCATGGATTCGATCTGTGAAGAAGAGAAGACACGACGAATTACAGACCGAGAAACGA 253
||||| | | |||| ||||||||| ||| ||| |||| ||||| ||| ||||||| |
Sbjct 464 GGTTCTTTGCTTCGGTCTGTGAAG-AGA-AAG-TACGAGGAATTTGAGAATGAGAAACCA 520
Query 254 -TTCTCGATACCGGAGCTGGACGACCTAGACATGTTC-TCTAATCCTAGAGTCCAAATTG 311
||| | |||||||||||||| | || ||| || || || ||| ||| |||||||||||
Sbjct 521 TTTCAC-ATACCGGAGCTGGA-G--CTGGACTTG-TCTTCCAATGCTAAAGTCCAAATTG 575
Query 312 AGAACGAA-TGTGAATTAC-TACGCGAGACTGTTAGCAATCAACAGCAAACGATTCAGGA 369
|||| ||| || || | | || | ||||||||||||| |||||||| ||||||| ||
Sbjct 576 AGAATGAATTG-GAGCTGCTTA-GGGAGACTGTTAGCAGCCAACAGCAGTCGATTCAAGA 633
Query 370 TTTGTATCATGAGCTTGAGC-AAGAGCGTATTGCTTCATCAACTGCTGC-AGATGAAAC- 426
||||||| | |||||||| | ||||||| | |||| |||| || ||||| || ||| |
Sbjct 634 TTTGTATGAGGAGCTTGA-CGAAGAGCGGAATGCTGCATCGACAGCTGCAAG-TGAGGCA 691
Query 427 A-GT-AAAGATGATTCAGACGTTGGAGCGTGAAAAAGCAAAAATCGACTTGGAACTGAAA 484
| || | ||| ||| || |||| || | || ||||| || || | ||||| ||| |
Sbjct 692 ATGTCTATGAT-ATT--GAGGTTGCAGAGGGAGAAAGCTGAACTCCAGATGGAATTGAGA 748
Query 485 CAGCTTCAGC-GTAGTGTTGACGA-AACATTGAATTATGAAAACCAAGAGATTGAGGCAT 542
||| || ||| || || ||| || || | || | |||| | |||||| || || ||
Sbjct 749 CAGTTTAAGCGGT-TTGCTGAGGAGAA-AATGGAGCATGATCAGCAAGAGCTTTTGG-AT 805
Query 543 -TGGAAAATATGGTTTATCAA-AGGGATCAGACGATTCAGGCTCTT-ACGTTTGAAACTC 599
||||| || || | ||| || ||||| ||||| ||||||||| || || | |||| |||
Sbjct 806 CTGGAAGATTTGATATAT-AAGAGGGAGCAGACAATTCAGGCT-TTGACATATGAAGCTC 863
Query 600 AGGCTTATAAGCACAGAATGATGAGTTTTGGGCTAACCGAAGCA-GAAGCTG--ATGGTG 656
||||||||||||| |||||||||||||||||||| || | || | || | || || | |
Sbjct 864 AGGCTTATAAGCATAGAATGATGAGTTTTGGGCTCACTG-AGGACGAGGTTGAAAT-G-G 920
Query 657 AGAGGAGCTTGCTTAGTCGTAACCCGAGCATGATCGAC-TTTAGTT-CTGAATATGA-CT 713
||| || | ||||||| ||||||||||||||||||||| | | || | ||||||| ||
Sbjct 921 AGAAGAACATGCTTAGCCGTAACCCGAGCATGATCGACAATGA-TTAC-CAATATGATCT 978
Query 714 GCCCTACA-CAAGATTACCCTCCTCTTAAA-TGCAATATTAATGAGAA-CCAAGACCCTC 770
||||||| | |||||||||||| |||| |||||| | ||||| || ||| | ||| |
Sbjct 979 -CCCTACATC-TGATTACCCTCCT-ATAAAGTGCAATGTGAATGAAAACCCAGGTCCC-C 1034
Query 771 TTGAGGCTGATATCT-ATGTTGCA-GATGATGAGAACTATCCACCAGCTGATTCTCCTCA 828
| ||||||||||| | |||||| | |||| ||| || |||||| |||||||| |||||
Sbjct 1035 TGGAGGCTGATAT-TGATGTTG-ATGATGTTGAAAAGTATCCATTGGCTGATTCACCTCA 1092
Query 829 TGG--GAGAGTACATTTAAAGACTTTGGATCGA-AGACTCAGCCAGATGGAGACG-AATC 884
||| | || || |||| ||||||||||| ||| || | || |||||||||| | ||||
Sbjct 1093 TGGCCGGGA-TA-ATTTGAAGACTTTGGAACGACGGA-TAAGTCAGATGGAGA-GAAATC 1148
Query 885 CTAGCTTTACTCAG-----T--TGA-ATAGAGGGA-GG-GATGTT-T-CAGAGAAG-GGG 931
|||||||||||||| | ||| || ||| || ||| || | | |||||| ||
Sbjct 1149 CTAGCTTTACTCAGTCTACTGGTGATGTATCCGGAGGGAGATATTATACGGAGAAGATGG 1208
Query 932 ATGGTTGGTGAGAGTCCTAGGC-GTCAAAGACATTTTAGGAGGATTTCCCCTACTGGTTC 990
|||||||| |||||||||||| | || ||||| || |||||| ||| || ||||||
Sbjct 1209 -TGGTTGGTCAGAGTCCTAGGCAG-CAGAGACACTTCAGGAGGGTTT--CC-ACTGGTAG 1263
Query 991 ATCAAGTTCACACTTGGGAGCATCTAAAGAACTAAGACCTGATGTTTT-TGTTGATTCCC 1049
|||||||||| |||||| || ||| |||| ||| ||||| |||| ||||||||
Sbjct 1264 TTCAAGTTCACTTTTGGGAACAACTAGGGAACAAAGGCCTGA-CTTTTCCAATGATTCCC 1322
Query 1050 CGAGGTCC--CAAAGCTACAGC-TCTAAGAAAATGGAAGATGTCTCGTATACAG--AG-A 1103
| |||||| ||| | | ||| || ||||||||||||||| ||| ||| ||| | |
Sbjct 1323 CAAGGTCCAACAATGGT--AGCTTC-AAGAAAATGGAAGATCCCTCATATGCAGCTGGTA 1379
Query 1104 A-T--AAT---AATGCTAAAGATGACTTGTCGGAAATAGGAG---ATGACATGAGTGATA 1154
| | | || | ||| | ||||| ||||||||||||| ||||||||| |||||
Sbjct 1380 ATTCCTTTGCAAAGGATAAGGGTGACTCATCGGAAATAGGAGATAATGACATGAATGATA 1439
Query 1155 GAGTTTATACCATTGATTCTGTTCATCACAGCAGTGTGGCTCATAGTGGCGGTG-TAGCG 1213
|||||||||||||||| ||||| | |||| || || | |||||||| |||| | ||
Sbjct 1440 GAGTTTATACCATTGACTCTGTCCGTCACGGC-GTAT--CTCATAGT---GGTGCT-GCT 1492
Query 1214 GAGCAGAAGATTGAGGATGGTGCTTCTGATGGCAATGTTGTTTTC-CCGAGAG--A-A-C 1268
||||||||| || || ||| || ||||||| ||| | | || ||||||| | | |
Sbjct 1493 GAGCAGAAGTTTAAGAATGACACTGCTGATGGTTATG-CGATGTCTCCGAGAGAAATATC 1551
Query 1269 --A-C-A-CGGATCTTGGTGATCCTGATATAACGAAACTCTACATGAGGCTTCAAGCACT 1323
| | | ||||||| ||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 1552 GAATCAACCGGATCTGGGTGATCCTGATATATCAAAACTCTACATGAGACTTCAAGCACT 1611
Query 1324 GGAGGCTGACAGGGAATCAATGAAACATGCGCTTCTCTCTATGAGGACTGA-AAAGGCTC 1382
|| ||||||||||||||||||| ||| ||| || | || ||||||||||| ||| || |
Sbjct 1612 AGAAGCTGACAGGGAATCAATGAGACAGGCGATTATGTCGATGAGGACTGAGAAA-GCAC 1670
Query 1383 AAATGGTACTGTTGAAAGAAATTGCTCAACACT-TGTCAAAGGAAGTTGTCCCTCAACGG 1441
| ||||| ||||||||||||||||| ||||| | |||||||||| ||| |||| ||||
Sbjct 1671 AGATGGTTCTGTTGAAAGAAATTGCCCAACA-TCTGTCAAAGGATGTTATCCCAGAACGT 1729
Query 1442 AGATTGCCTCTACGTAAAGCATCTATTGCTGG-GCCATTGACTTTTACGCCGGTCTTTAA 1500
|||||||| || || ||||||||||||| ||| | |||| | ||| | | ||||||||
Sbjct 1730 AGATTGCCACTGCGGAAAGCATCTATTGTTGGAG-CATTCAATTTCATATCTGTCTTTAA 1788
Query 1501 GTGGATCACATCTTTTGTTTCCTGGA-AAAGAAAGGCTCGTCGAAGCAAATACATGTATG 1559
|||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| | |
Sbjct 1789 GTGGATCACATCTTTTGTTTTCTGGAGAAA-AAAGGCTCGTCGAAGCAAATACATGAACG 1847
Query 1560 GGATGTCA-GGAAACAACATCGGCTTGCAAATGCTTCTAGAAAA-AGTCCCTCGG-TCAA 1616
|| || || || |||||||| || |||||||||||||||||||| | ||| |||| | |
Sbjct 1848 GGGTG-CAAGGGAACAACATGGGATTGCAAATGCTTCTAGAAAAGACTCC-TCGGAT-AC 1904
Query 1617 GGAAATGGCGATGTCTTAGGA-GCACGCAAGTGTGAAA 1653
|| ||||| ||||||| | | |||| |||||||||||
Sbjct 1905 GGCAATGGAGATGTCT-ATCAAGCACACAAGTGTGAAA 1941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5