BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11880.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341309 jgi|Araly1|341309|fgenesh1_pg.C_scaffold_3001072 1057 0.0
Ahg924441 jgi|Araly1|924441|scaffold_200002.1 813 0.0
Ahg476207 jgi|Araly1|476207|fgenesh2_kg.2__1337__AT1G70770.1 691 0.0
Ahg887462 jgi|Araly1|887462|Al_scaffold_0092_2 486 2e-136
Ahg356991 jgi|Araly1|356991|fgenesh1_pg.C_scaffold_8000778 425 4e-118
Ahg345677 jgi|Araly1|345677|fgenesh1_pg.C_scaffold_4002019 342 4e-93
Ahg928904 jgi|Araly1|928904|scaffold_301361.1 178 1e-43
Ahg313192 jgi|Araly1|313192|fgenesh1_pm.C_scaffold_1001972 158 2e-37
Ahg346720 jgi|Araly1|346720|fgenesh1_pg.C_scaffold_5000112 134 3e-30
> Ahg341309 jgi|Araly1|341309|fgenesh1_pg.C_scaffold_3001072
Length=3168
Score = 1057 bits (572), Expect = 0.0
Identities = 928/1092 (85%), Gaps = 56/1092 (5%)
Strand=Plus/Plus
Query 142 GGAGGAGCAGCTATTGAAATTTGTCGATTACCTTGAGATAAAACTTTCCTCTGTGCAATA 201
||||| || |||||||| ||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 387 GGAGGTGCGGCTATTGAGATTTGTCGATTACCTTGGGATAACACTTTCCGCTGTGCAATT 446
Query 202 TCTATGGCTGGACATGTTCAAAGGGTCTCCTTGCCCCAAGCTGATAGATATGATTGATGT 261
|| ||||||||| | |||| || | ||||| |||||||| |||||| |||| |||||
Sbjct 447 TCCATGGCTGGAGACGTTC-AA--G---CCTTGGCCCAAGCTCATAGATCTGATCGATGT 500
Query 262 TCCATTATCTCATATTCCTGTATCTGTCTACGACACATCAGTCGAGTGGCTCGACAAATT 321
||||||||||||||| |||| | |||||||| | ||||||||||| |||||| || ||||
Sbjct 501 TCCATTATCTCATATCCCTGAACCTGTCTACAAAACATCAGTCGATTGGCTCTACCAATT 560
Query 322 TTCTATTGGGTTACTCTG-TGCCTTTGTAGTGTGGTCGTTGAATCGTCTTCTCACGATTT 380
|||||||| |||| | |||||||||| ||||||||||||||| | ||||||||| ||
Sbjct 561 ACCTATTGGGACACTC-GCTGCCTTTGTATTGTGGTCGTTGAATCATATTCTCACGAATT 619
Query 381 TGGAACC---A---CCACAACAGG-GAGGTC-A---CCAGCGACGTACTACTTCCAAATT 429
||||||| | || ||| ||| | || | | |||| |||||||||||||||||
Sbjct 620 TGGAACCAGGAGGTCC-CAA-AGGTGGGGACAATGGTCAGCAACGTACTACTTCCAAATC 677
Query 430 TCACGTAGCAGTATTTGTTGCACTAGCAATGGTATTGCGTAATGAACCTAATACTTTGGT 489
||| || ||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 678 TCATGTTGCAATATTTGTTGCACTAGCAATGGTATTGCGCATTGAACCTAATACTTTGGT 737
Query 490 TATTGTATTGCCGACTCTCAAGGAAG-ACGAGTATCAAGGACATGACAAGCTTCCGATTT 548
||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||
Sbjct 738 TATTGTATTGCCGACTCTCAAGG-AGTACAAGTATCGAGGACATGACAAGCTTCCGATTA 796
Query 549 TAGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATTTATCTGTAGGCTTGTATTCATGGT 608
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 797 TAGTTTGGATGGTGGCTCAGGCCTCCCAAGGTGATTTATCTGTAGGCTTGCATTCATGGG 856
Query 609 CGTGTAACTTGTTACCAGTATTTTACCAAGAAAACTTGTTACCAGTATCCCGTAGCAACT 668
||| |||||||||||| | | || ||| | | | | | |||||||
Sbjct 857 CGTCTAACTTGTTACC--------A-CTAG--TACTAG-T--C-G-A-----TAGCAACC 895
Query 669 CTCAGTCAATGGATCTCATCCTGCAGTTGGCTGAGATGATTTTGTCTAATCTTGATGCTC 728
|||| ||||||||||||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct 896 CTCACTCAATGGATCTCATCCTGCAGTTGGTTGAGAAGATTTTGTCTACTCCAAATGCTC 955
Query 729 GGACTATACTTGTAAACGGAACCGTTATAGATAAACAGCGACTGATTTCACCTTATGCAT 788
|||| |||||| |||| ||| ||||||| ||| ||||||| |||||||||||||||
Sbjct 956 GGACCATACTTTTAAATGGAGTTATTATAGAGGAACTGCGACTGGTTTCACCTTATGCAT 1015
Query 789 TTGAGCTCTTGATGCGGCTTACATTCCCTGCTTCATCTGAAAGAGTAAAGGCTACAGAGA 848
||||| |||||||||||| | |||| | | |||| | ||||||||||||||||||||
Sbjct 1016 TTGAGATCTTGATGCGGCGTGCATT--C--C--CATCCGCAAGAGTAAAGGCTACAGAGA 1069
Query 849 GGTTTGAGGCAATTTATCCCTTGTTGAAGGAAGTGGCTCTTGCCTGTGAACCAGGAAGCG 908
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1070 GGTTTGAGGCAATTTATCCCTTGTTGAAGGAAGTGGCTCTTGCCGGTGAACCAGGAAGCG 1129
Query 909 AGTTAATGAAACAAGTCACTCAACAAATATTCCATTATTCTTTGATAATAGCTGGAAGAA 968
||| ||||||||||||||||||| |||||||| ||| ||||||| |||| ||||||| ||
Sbjct 1130 AGTCAATGAAACAAGTCACTCAAGAAATATTCTATTGTTCTTTGGTAATTGCTGGAA-AA 1188
Query 969 G-AAATCTTGTTTTAGCCAAGGAAGCTACAGCAATCGCTGTCTGGTCTCTGACCGAAAAC 1027
| ||||| || |||||||| ||||||||||||||| ||| |||||||| |||||||||||
Sbjct 1189 GGAAATCCTGCTTTAGCCACGGAAGCTACAGCAATGGCTATCTGGTCTTTGACCGAAAAC 1248
Query 1028 GTAGATTGCTGCAAGCAGTGGGAAAAACTCTATTGGGAGAAT-AAAGAAGCTAGTGTTGC 1086
||||| ||||||||||| ||||||| |||| ||||||||||| ||| ||| ||||| |||
Sbjct 1249 GTAGAATGCTGCAAGCAATGGGAAAGACTCAATTGGGAGAATCAAA-AAGGTAGTGCTGC 1307
Query 1087 TGTTCTTAAAAAGCTTGTAGATGAAAGGGGTGATATTTCCATCAAACTAGCATCATCACC 1146
||||||||||||||||| ||||||| || |||||||||| |||||||| ||||||||||
Sbjct 1308 TGTTCTTAAAAAGCTTGAAGATGAATGGAATGATATTTCCCTCAAACTATCATCATCACC 1367
Query 1147 GAGTCATAA-ATTCACACTCAATCAAACTATGGAGAGCATCAGGCTaaaaaacgaaaaaG 1205
|||||||| || ||| |||| |||||||||| ||| |||||||||||| || ||||||
Sbjct 1368 GAGTCATACTAT-CACTCTCATTCAAACTATGAAGAACATCAGGCTAAAGAATAAAAAAG 1426
Query 1206 CCATCACTGAAG 1217
||| ||||||||
Sbjct 1427 CCACCACTGAAG 1438
> Ahg924441 jgi|Araly1|924441|scaffold_200002.1
Length=1476
Score = 813 bits (440), Expect = 0.0
Identities = 717/846 (85%), Gaps = 38/846 (4%)
Strand=Plus/Plus
Query 641 AACTTGTTACCAGTA-TCCCGTAGCAACTCTCAGTCAATGGATCTCATCCTGCAGTTGGC 699
|||||||||||| || | | |||||||| ||||||||| ||||||||||||||||||||
Sbjct 646 AACTTGTTACCACTAGT-CGGTAGCAACCCTCAGTCAAGGGATCTCATCCTGCAGTTGGT 704
Query 700 TGAGATGATTTTGTCTAATCTTGATGCTCGGACTATACTTGTAAACGGAACCGTT-ATAG 758
||||| |||||||| |||| |||||||||||||||||||| | ||| | ||| | ||
Sbjct 705 TGAGAAAATTTTGTCGAATCAAAATGCTCGGACTATACTTGTAGATGGAGCTGTTGA-AG 763
Query 759 A-TAAACAGCGACTGATTTCACCT-TATGCATTTGAGCTCTTGATGCGGCTTACATTCCC 816
| | || ||||||||| ||||| | | |||||||| ||||| ||||||||||||||||
Sbjct 764 AGGGACCA-CGACTGATTCCACCTCT-TTCATTTGAGATCTTGCTGCGGCTTACATTCCC 821
Query 817 TGCTTCATCTGAAAGAGTAAAGGCTACAGAGAGGTTTGAGGCAATTTATCCCTTGTTGAA 876
||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 822 TGCTTCATCCGCAAGAGTAAAGGCTACAGAGAGGTTTGAGGCAATTTATCCTTTGTTGAA 881
Query 877 GGAAGTGGCTCTTGCCTGTGAACCAGGAAGCGAGTTAATGAAACAAGTCACTCAACAAAT 936
|||||||||||||||| ||| | |||||||| |||||||||||||||||||| |||| ||
Sbjct 882 GGAAGTGGCTCTTGCCGGTGCATCAGGAAGCAAGTTAATGAAACAAGTCACTGAACAGAT 941
Query 937 ATTC-CATTATTCTTTGATAATAGCTGGAAGAAG-AAATCTTGTTTTAGCCAAGGAAGCT 994
|||| | || |||||||| | |||||| | |||| ||||| |||||||||||||||||||
Sbjct 942 ATTCACTTT-TTCTTTGAGATTAGCTGCA-GAAGGAAATCCTGTTTTAGCCAAGGAAGCT 999
Query 995 ACAGCAATCGCTGTCTGGTCTCTGACCGAAAACGTAGATTGCTGCAAGCAGTGGGAAAAA 1054
|||||||| ||| |||||||| ||||||| ||||| |||||||||| || ||||||||
Sbjct 1000 ACAGCAATTGCTATCTGGTCTGTGACCGAGAACGTTGATTGCTGCAGGCTCTGGGAAAAT 1059
Query 1055 CTCTATTG-GGAGAATAAAGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAGATGAAAG 1113
|||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1060 CTCTAT-GAGGAGAACGAAGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAGACGAATG 1118
Query 1114 GG-GTGAT-ATT-TCCATCAAACTAGCATCATCACCGAGTCATAAAT-TCACACTCAATC 1169
| | ||| ||| || ||||||| |||||||||| ||| ||| | |||| |||| |
Sbjct 1119 GAAG-GATCATTCTCG--CAAACTATCATCATCACCAAGTGATAC-TCTCACTCTCAGTG 1174
Query 1170 AAACTATGGAGAGCATCAGGCTaaaaaacgaaaaaGCCATCACTGAAGGAGGAACCATTG 1229
||||||||||||| | || ||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 1175 GAACTATGGAGAGCTTGAGTCTAAAGAACGAAAAAGCCATCACTGAAGGAGGAGCCAATG 1234
Query 1230 GTTCTCGTTACAAAGAAGCTGACAAGTCCTGCAAAGTGATGTCGGGTAGATTCTTCCC-T 1288
|||||| ||||||||||||||||||||| |||| || ||| ||||| ||| ||| ||| |
Sbjct 1235 GTTCTCTTTACAAAGAAGCTGACAAGTCTTGCAGAGCGATCTCGGGGAGACTCT-CCCGT 1293
Query 1289 GAAAATGCCTGCCTCAAAGGTACAGCCATTATTACTGCTGTGGTTCTAGCTGCTGTAGCT 1348
| || || |||||||||||| ||| |||||| ||| ||||||||||||||||| || |
Sbjct 1294 GGAAGTGGCTGCCTCAAAGGAACATCCATTA---CTGTTGTGGTTCTAGCTGCTGCAGTT 1350
Query 1349 GTACTAGCTTCCAACCTG-----TA-----G-GCTGAAGAAGATGGTGGACTCATTGGTT 1397
|||||| ||||||||||| || | |||||||||| || ||||||| ||| |
Sbjct 1351 GTACTATCTTCCAACCTGGAGGCTACATCCGTGCTGAAGAAGCTGCTGGACTCGGTGGAT 1410
Query 1398 CTGCACCTATACTTCAATGCAAACACCTCAGCTTTGAAGAACTAAGAGAGATATACCATT 1457
|||||||||||||||||||||| |||| |||||||||||| |||||||||| ||| ||||
Sbjct 1411 CTGCACCTATACTTCAATGCAACCACCACAGCTTTGAAGAGCTAAGAGAGAAATATCATT 1470
Query 1458 GTCCTT 1463
||||||
Sbjct 1471 GTCCTT 1476
Score = 337 bits (182), Expect = 2e-91
Identities = 424/535 (79%), Gaps = 39/535 (7%)
Strand=Plus/Plus
Query 121 GAAATCACATGCCTTTGTGCCGGAGGAGCAGCTATTGAAATTTGTCGATTACCTTGAGAT 180
|||||| |||| | || |||||||| |||||||||| ||| |||| ||||||||||
Sbjct 132 GAAATCGTATGCGTATGAGCCGGAGGTTCAGCTATTGAGATTCATCGAGTACCTTGAGAG 191
Query 181 AAAACTTTCCTCTGTGCAATATCTAT-GGCTGGACATGTTCAAAGG-GTCTCC-TTGCCC 237
|| ||||||| ||||||||| || || ||| | | |||||| |||| |||||| ||| ||
Sbjct 192 AACACTTTCCGCTGTGCAATTTCCATGGGC-GAATATGTTC-AAGGAGTCTCCTTTG-CC 248
Query 238 CAAGCTGATAGATATGATTGATGTTCCATTATCTCATATTCCTGTA-TCTGTCTACGACA 296
||||||||| || |||| |||||||| ||||| || ||||| | | |||||||| | |
Sbjct 249 CAAGCTGATCGACGTGATCGATGTTCCTTTATCGCAAATTCCCG-ACCCTGTCTACAAAA 307
Query 297 CATCAGTCGAGTGGCTCGACAAAT-TTTCTATTGGGTTACTCTGTGCCTTTGTAGTGTGG 355
|||||||||| ||| || || || || || || | ||| |||| |||||| |||||
Sbjct 308 CATCAGTCGATTGGATCAAC-CATCTTCCTCTTATGACACTATGTGGCTTTGTTTTGTGG 366
Query 356 TCGTTGAATCGTCTTCTCACGAT-TTTGG-A--A-C-C-AC---CACA-A-C--AGG-GA 400
|||| |||| | ||||||| | ||||| | | | | || ||| | | ||| |
Sbjct 367 GCGTTTAATCATATTCTCAC-TTATTTGGCAGCAGCACAACTAGGACATACCAAAGGTGG 425
Query 401 GG-TCA-CCAGCG--ACGTAC-TACTTCCAAATTTCACGTAGCAGTATTTGTTGCACTAG 455
|| | ||| || ||| | ||||||| | || |||||| ||||||||||| |||
Sbjct 426 GGAGAAGGGTGCGCAACATACGT-CTTCCAAGTCTCGGGTAGCAATATTTGTTGCATTAG 484
Query 456 CAATGGTATTGCGTAATGA-ACCTAATACTTTGGTTATTGTATTGCCGACTCTCAAGGAA 514
|||||||||||||||| | ||||||| |||||| |||||||||||||||||| ||| |
Sbjct 485 CAATGGTATTGCGTAA-CAGACCTAATGCTTTGGCTATTGTATTGCCGACTCT-GAGGGA 542
Query 515 G-A-CG--AGTATCAAGGACATGACAAGCTTCCGATTTTAGTTTGGATGATGGCTCAGGC 570
| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 543 GAAGCGTAAGTATCAAGGACATGACAAGCTTCCGATTACAGTTTGGATGATGGCTCAGGC 602
Query 571 CTCCCAAGGTGATTTATCTGTAGGCTTGTATTCATGGTCGTGTAACTTGTTACCA 625
||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 603 CTCCCAAGGTGATTTATCTGTAGGCTTGTATTCATGGGCGCATAACTTGTTACCA 657
> Ahg476207 jgi|Araly1|476207|fgenesh2_kg.2__1337__AT1G70770.1
Length=2321
Score = 691 bits (374), Expect = 0.0
Identities = 765/947 (81%), Gaps = 54/947 (6%)
Strand=Plus/Plus
Query 415 TACTACTTCCAAATTTCACGTAGCAG-TATTTGTTGCACTAGCAATGGTATTGCGTAATG 473
|||| ||||||||| ||| || || | ||||||||||| |||| |||||||||||| | |
Sbjct 883 TACTTCTTCCAAATCTCAGGTGGC-GATATTTGTTGCATTAGCGATGGTATTGCGT-AGG 940
Query 474 AA-CCTAATACTTTGGTTATTGTATTGCCGACTCTCAAGGAAGA--C-GAGTATCAAGGA 529
|| ||| || ||||| || ||||||||| ||||| | |||| | | ||||||| |||
Sbjct 941 AAGCCTGATGCTTTGACTAATGTATTGCCAACTCTGAGGGAAAATCCTAAGTATCAGGGA 1000
Query 530 CATGACAAGCTTCCGATTTTAGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATTTATCT 589
|| || ||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct 1001 CAGGATAAGCTTCCGGTTACAGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATCTATCT 1060
Query 590 GTAGGCTTGTATTCATGGTCGTGTAACTTGTTACCAGTATTTTACCAAGAAAACTTGTTA 649
|||||||||||||||||| | ||||||||||| | || | | | || ||
Sbjct 1061 GTAGGCTTGTATTCATGGGCACACAACTTGTTACC--TGTTGT--C--GGTAA-----TA 1109
Query 650 CCAGTATCCCGTAGCAACTCTCAGTCAATGGATCTCATCCTGCAGTTGGCTGAGATGATT 709
|| | | | ||||| ||||||||| |||||||||||| ||||||| ||||| |||
Sbjct 1110 --AG-A--AC-T-GCAACCCTCAGTCAAGGGATCTCATCCTCCAGTTGGTTGAGAAAATT 1162
Query 710 TTGTCTAATCTTGATGCTCGGACTATACTTGTAAACGGAACCGTTATAGATAA--ACAGC 767
||| | |||| | ||||| || ||||||||||||||| | |||| || || | |||
Sbjct 1163 TTGACGAATCCAAAGGCTCGCACCATACTTGTAAACGGAGCTGTTA-GGA-AAGGAGAGC 1220
Query 768 GACTGATTTCACCTTATGCATTTGAGCTCTTGATGCGGCTTACATTCCCTGCTTCATCTG 827
|| ||||| | || | |||||||| ||||| ||||||||||||||||||| ||||| |
Sbjct 1221 GATTGATTCCGCCCCCTTCATTTGAGATCTTGTTGCGGCTTACATTCCCTGCATCATCCG 1280
Query 828 AAAGAGTAAAGGCTACAGAGAGGTTTGAGGCAATTTATCCCTTGTTGAAGGAAGTGGCTC 887
||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||
Sbjct 1281 CAAGAGTAAAGGCTACAGAGAGGTTTGAGGCAATATATCCTTTGCTGAAACAAGTGGCTC 1340
Query 888 TTGCCTGTGAACCAGGAAGCGAGTTAATGAAACAAGTCACTCAACAAATATTC-CATTAT 946
||||| ||| |||||||||| || ||||||||||||||| ||||| |||||| | || |
Sbjct 1341 TTGCCGGTGCACCAGGAAGCAAGGCAATGAAACAAGTCACACAACAGATATTCAC-TT-T 1398
Query 947 T-CTTTGATAAT-AGCTGGAAGAAG-AAATCTTGTTTTAGCCAAGGAAGCTACAGCAATC 1003
| || ||| ||| ||||||| |||| ||||| |||||||||||||||||||| || |||
Sbjct 1399 TGCTCTGA-AATTAGCTGGA-GAAGGAAATCCTGTTTTAGCCAAGGAAGCTAAAGAAATT 1456
Query 1004 GCTGTCTGGTCTCTGACCGAAAACGTAGATTGCTGCAAGCAGTGGGAAAAACTCTATTGG 1063
|| |||||||| ||||||| ||||| |||||||||||||| ||||| || ||||| |
Sbjct 1457 GCCCTCTGGTCTGTGACCGAGAACGTTGATTGCTGCAAGCACTGGGACAATCTCTACAAG 1516
Query 1064 GAGAA-TAAAGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAGATGAAAGG--GGTGAT 1120
||||| | |||||||||||||||||||||||||||||||| || ||| || || |
Sbjct 1517 GAGAACTTG-GAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTTGAGGAATGGAAGGAGC- 1574
Query 1121 ATTTCCA-TCAAACTAGCATCATCACCGAGTCATAAAT-TCACACTCAATCAAACTATGG 1178
||| | | |||||||| | |||||||||| | || | |||| ||||| | ||| |||
Sbjct 1575 ATT-C-AGTCAAACTATCCTCATCACCGAATGATGC-TCTCACTCTCAACCGAACAATGA 1631
Query 1179 AGAGCATCAGGCTaaaaaacgaaaaaGCCATCACTGAAGGAGGAACCATTGGTTCTCGTT 1238
| ||| |||||||||| ||||| | |||||||||||||||||| ||| |||||||| ||
Sbjct 1632 AAAGCTTCAGGCTAAAGAACGAGGAGGCCATCACTGAAGGAGGAGCCAATGGTTCTCTTT 1691
Query 1239 ACAAAGAAGCTGACAAGTCCTGCAAAGTGATGTCGGGTAGATTCTTCCC-TGAAAATGCC 1297
||||||||||||||||||| ||||||| ||| ||||| ||| ||| ||| || || || |
Sbjct 1692 ACAAAGAAGCTGACAAGTCTTGCAAAGCGATCTCGGGGAGACTCT-CCCGTGGAAGTGGC 1750
Query 1298 TGCCTCAAAGGTACAGCCATTA-TTACTGCTGTGGTTCTAGCTGCTG 1343
||||||||||| |||||||||| || | |||||||||||||||||
Sbjct 1751 TGCCTCAAAGGAACAGCCATTACTT--T--TGTGGTTCTAGCTGCTG 1793
> Ahg887462 jgi|Araly1|887462|Al_scaffold_0092_2
Length=1665
Score = 486 bits (263), Expect = 2e-136
Identities = 542/671 (81%), Gaps = 41/671 (6%)
Strand=Plus/Plus
Query 643 CTTGTTACCAGTATCCCG-TAGCAACTCTCAGTCA-ATGGATCTCATCCTGCAGTTGGCT 700
||||||||||| | || || |||| |||| ||| | | |||||||||||||| ||| |
Sbjct 897 CTTGTTACCAGCA-GTCGATACCAACCCTCACTCACA-GAATCTCATCCTGCAGCTGGTT 954
Query 701 GAG-ATGATTTTGTC-TAATCTTGATGCTCGGACTATACTTGTAAACG-GAACCGT-TAT 756
||| || |||||||| || | |||||||||| |||||||| | | || | || | |
Sbjct 955 GAGAAT-ATTTTGTCGCAA-CCAAATGCTCGGACCATACTTGTTGA-GAGAGCTGTCT-T 1010
Query 757 AGATAAACA-GCGACTGATTTCACCTTATGCATTTGAGCTCTTGATGCGGCTTACATTCC 815
|| | || | || ||||| |||||| | |||||||| |||| |||||||||| ||||
Sbjct 1011 TGAGGATCATG-GAGTGATTCCACCTTCTTCATTTGAGAGCTTGCTGCGGCTTACCTTCC 1069
Query 816 CTG-CTTCATCTGAAAGAGTAAAGGCTAC-AGAGAGGTTTGAGGCAATTTATCCCTTGTT 873
||| | ||||| | ||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 1070 CTGAC-TCATCCGCAAGAGTAAAGGCTACAACA-AGGTTTGAGGCAATTTATCCCTTGTT 1127
Query 874 GAAGGAAGTGGCTCTTGCCTGTGA-ACCAGGAAGCGAGT-TAATGAAACAAGTCACTCAA 931
||||||| ||||||||||| || | ||||||| ||||| || ||||| ||| | ||| |
Sbjct 1128 GAAGGAATTGGCTCTTGCCGGT-ACACCAGGAGGCGAGGCTA-TGAAAAAAGCCGCTCGA 1185
Query 932 CAAATATTCCATTATT-CTTTGATAATAGCTGGAAGAAG-AAATCTTGTTTTAGCCAAGG 989
|| |||||| ||| || |||||| | ||||||| || | ||||| ||||||||||||||
Sbjct 1186 CAGATATTC-ATTTTTTCTTTGAGATTAGCTGGGGGA-GCAAATCCTGTTTTAGCCAAGG 1243
Query 990 AAGCTACAGCAATCGCTGTCTGGTCTCTGACCGAAAACGTAGATTGCTGCAAGCAGTGGG 1049
|||||||| |||||||| ||||| |||||||||||||| ||| ||||||||| || ||||
Sbjct 1244 AAGCTACATCAATCGCTATCTGGGCTCTGACCGAAAACATAGTTTGCTGCAATCACTGGG 1303
Query 1050 AAAAACTCTATTGGGAG-AATA-AAGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAGA 1107
| || ||||| | || ||| || |||||||||||||| |||||||||| ||||||||
Sbjct 1304 ACAATCTCTAC-GAGAATAATCTAA-AAGCTAGTGTTGCTCTTCTTAAAAATCTTGTAGA 1361
Query 1108 TGAAAGGG-GTGAT-ATT-TCCATCAAACTAGCATCATCACCGAGTCATAAAT-TCACAC 1163
||| || | ||| ||| || ||||||| ||||||||| |||| ||| | |||| |
Sbjct 1362 CGAATGGAAG-GATCATTCTCG--CAAACTATCATCATCACGGAGTAATAC-TCTCACTC 1417
Query 1164 TCAATCAAACTATGGAGAGCATCAGGCTaaaaaacgaaaaaGCCATCACTGAAGGAGGAA 1223
|||||||||||||| ||||| |||||||||||||||||||||| || | | ||||||||
Sbjct 1418 TCAATCAAACTATGAAGAGCTTCAGGCTAAAAAACGAAAAAGCTATTAATAAAGGAGGAG 1477
Query 1224 CCATTGGTTCTCGTTACAAAGAAGCTGACAAGTCCTGCAAAGTGATGTCGGGTAGATTCT 1283
||| || ||||| |||||||||||||||| |||| ||||||||||| | ||| ||| | |
Sbjct 1478 CCAATGCTTCTCTTTACAAAGAAGCTGACGAGTCATGCAAAGTGATCTTGGGAAGACT-T 1536
Query 1284 TCCCTG-AAAA 1293
||| || ||||
Sbjct 1537 TCC-TGGAAAA 1546
> Ahg356991 jgi|Araly1|356991|fgenesh1_pg.C_scaffold_8000778
Length=1107
Score = 425 bits (230), Expect = 4e-118
Identities = 697/910 (77%), Gaps = 82/910 (9%)
Strand=Plus/Plus
Query 442 ATTTGTTGCACTAGCAATGGTATTGCGTAATGAACCTAATACTTTGGTTATTGTATTGCC 501
|||||||||| |||||||||||||||||| | |||||||| |||| | | |||||||
Sbjct 174 ATTTGTTGCATTAGCAATGGTATTGCGTACTAAACCTAATGTTTTGACCACTCTATTGCC 233
Query 502 GACT-CTCAAGGA-AG-ACGA-GTATCAAGGACATGACAAGCTTCCGATTTTAGTTTGGA 557
|| | || | ||| || | | || ||||||||| |||||||||||| || |||||||
Sbjct 234 GA-TGCTGAGGGAGAGAATTATGTTTCAAGGACAGGACAAGCTTCCGGTTACAGTTTGGT 292
Query 558 TGATGGCTCAGGCCTCCCAAGGTGATTTATCTGTAGGCTTGTATTCATGGTCGTGTAACT 617
| |||||||||||||| |||||||||||||||| ||| ||||||||||| || |||||
Sbjct 293 TAATGGCTCAGGCCTCTGAAGGTGATTTATCTGTTGGCCTGTATTCATGGGCGCATAACT 352
Query 618 TGTTACCAGTATTTTACCAAGAAAACTTGTTACCAGTATCCCGTAGCA-ACTCTCAGTCA 676
||||||| || | | | || | || || | | || || || ||||||
Sbjct 353 TGTTACCCCTA--GT--C--GGTAA----TAACAAG--T-GC-TA-CAGCCT-TCAGTCG 396
Query 677 ATGGATCTCATCCTGCAGTTGGCTGAGATGATTTTGTCTAATCTTGATG-CTCGGACTAT 735
|||||||||||||||| |||| ||||| |||||||| |||| || | || |||| ||
Sbjct 397 GTGGATCTCATCCTGCAATTGGTTGAGAAAATTTTGTCGAATCCAGA-GTCTAGGACCAT 455
Query 736 ACTTGTAAACGGAACCGTTATAGAT--AA-ACAGCGACTGATTTCACCTTA-TGCATTTG 791
||||||||| ||| | |||| ||| || || | ||||| |||| || | ||||||
Sbjct 456 ACTTGTAAATGGAGCTGTTAGGGATGGAATTCA--G-CTGATACCACC-TACTTCATTTG 511
Query 792 AGCTCTTGATGCGGCTTACATTCCCTGCTTCATCTGAAAGAGTAAAGGCTACAGAGAGGT 851
|| ||||| | ||| |||| |||||||||||||| | ||||||||| | || |||||||
Sbjct 512 AGATCTTGGTACGGTTTACCTTCCCTGCTTCATCGGCGAGAGTAAAGACCACGGAGAGGT 571
Query 852 TTGAGGCAATTTATCCCTTGTTGAAGGAAGTGGCTCTTGCCTGTGAACCAGGAAGCGAGT 911
||||||| ||||||||||||||||||||||| ||||||| | |||||||||| ||
Sbjct 572 TTGAGGCCATTTATCCCTTGTTGAAGGAAGTAGCTCTTG-C-----ACCAGGAAGC-AG- 623
Query 912 TAATGAAACAAGTCACTCAACAAATATTCCATTATTCTTTGATAA-TAGCTGGAAGAA-G 969
| | || | | || || || ||| |||| || ||||||| |||| |
Sbjct 624 --A-G-----AG--A-T------AT-TT-GGTTTTTCGTTGA-AATTAGCTGG-AGAAGG 662
Query 970 AAATCTTGTTTTAGCCAAGGAAGCTACAGCAATCGCTGTCTGGTCTCTGACCGAAAACG- 1028
||||| ||||||||||||||||||||||| ||| ||| || ||||| |||||| ||| |
Sbjct 663 AAATCCTGTTTTAGCCAAGGAAGCTACAGAAATTGCTATCGGGTCTTTGACCGCAAATGC 722
Query 1029 TAGATTGCTGCAAGCAGTGGGAAAAACTCTATTGGGAGAATAAAGAAGCTAGTGTTGCTG 1088
| ||||||| ||||||||||| | || ||| |||||| |||||||||||||| |
Sbjct 723 T-GATTGCTTTAAGCAGTGGGACATTCTATATAAGGAGAACCTAGAAGCTAGTGTTGTTC 781
Query 1089 TTCTTAAAAAGCTTGTAGATGAAAGG-GGTGAT-ATTTC-CATCAAACTAGCATCATCAC 1145
||||||||||||||||||| ||| || | ||| | ||| | |||||||| |||| |||
Sbjct 782 TTCTTAAAAAGCTTGTAGACGAATGGAAG-GATCA-TTCTC-TCAAACTAATATCAACAC 838
Query 1146 CGAGTCATAAAT-TCACACTCAATCAAACTATGGAGAGCATCAGGCTaaaaaacgaaaaa 1204
| ||| || | | |||| ||||||| | ||| | ||| |||||||||| ||| |||||
Sbjct 839 CAAGTGAT-ACTCTCACCCTCAATCGGGCCATGAATAGCTTCAGGCTAAAGAACAAAAAA 897
Query 1205 GCCATCACTGAAGGAGGAA-C-CATTGGTTCTCGTTACAAAGAAGCTGACAAGTCCTGCA 1262
||||||||| || || ||| | | || ||||| ||||||||||||||||||||||||||
Sbjct 898 GCCATCACTAAAAGA-GAAGCTC-TTTGTTCTATTTACAAAGAAGCTGACAAGTCCTGCA 955
Query 1263 AAGTGATGTCGGGTAGATTCTTC-CCTGAAAATGCCTGCCTCAAAGGTA---CAGCCATT 1318
||||||| | ||| ||| ||| | || ||| || || ||||||||||| |||| ||
Sbjct 956 AAGTGATCTTGGGGAGACTCTCCTCCGGAAG-TGGCTACCTCAAAGGTATAACAGCTGTT 1014
Query 1319 ATTACTGCTG 1328
| ||||||||
Sbjct 1015 ACTACTGCTG 1024
> Ahg345677 jgi|Araly1|345677|fgenesh1_pg.C_scaffold_4002019
Length=921
Score = 342 bits (185), Expect = 4e-93
Identities = 342/414 (83%), Gaps = 26/414 (6%)
Strand=Plus/Plus
Query 796 CTTGATGCGGCTTACATT--CCCTG-CTTCATCTGAAAGAGTAAAGGCTACAG-AGAGGT 851
|||| |||||||||| || ||||| | ||||| | ||||||||||||||||| | ||||
Sbjct 427 CTTGCTGCGGCTTACCTTCCCCCTGAC-TCATCCGCAAGAGTAAAGGCTACAGCA-AGGT 484
Query 852 TTGAGGCAATTTATCCCTTGTTGAAGGAAGTGGCTCTTGCCTGTGA-ACCAGGAAGCGAG 910
||||||||||||||||||||||||||||| ||||||||||| || | ||||||| |||||
Sbjct 485 TTGAGGCAATTTATCCCTTGTTGAAGGAATTGGCTCTTGCCGGT-ACACCAGGAGGCGAG 543
Query 911 T-TAATGAAACAAGTCACTCAACAAATATTCCATTATT-CTTTGATAATAGCTGGAAGAA 968
|| ||||| ||| | ||| ||| ||||| ||| || |||||| | ||||||| ||
Sbjct 544 GCTA-TGAAAAAAGGCGCTCGACAGATATTT-ATTTTTTCTTTGAGATTAGCTGGGGGA- 600
Query 969 G-AAATCTTGTTTTAGCCAAGGAAGCTACAGCAATCGCTGTCTGGTCTCTGACCGAAAAC 1027
| ||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 601 GCAAATCCTGTTTTAGCCAAGGAAGCTACATCAATCGCTATCTGGGCTCTGACCGAAAAC 660
Query 1028 GTAGATTGCTGCAAGCAGTGGGAAAAACTCTATTGGGAG-AATA-AAGAAGCTAGTGTTG 1085
||| ||||||||| || ||||| || ||||| | || ||| || ||||||||||||
Sbjct 661 ATAGTTTGCTGCAATCACTGGGACAATCTCTAC-GAGAATAATCTAA-AAGCTAGTGTTG 718
Query 1086 CTGTTCTTAAAAAGCTTGTAGATGAAAGGG-GTGAT-ATT-TCCATCAAACTAGCATCAT 1142
|| |||||||||| |||||||| ||| || | ||| ||| || ||||||| ||||||
Sbjct 719 CTCTTCTTAAAAATCTTGTAGACGAATGGAAG-GATCATTCTCG--CAAACTATCATCAT 775
Query 1143 CACCGAGTCATAAAT-TCACACTCAATCAAACTATGGAGAGCATCAGGCTaaaa 1195
||| |||| ||| | |||| ||||||||||||||| ||||| |||||||||||
Sbjct 776 CACGGAGTAATAC-TCTCACTCTCAATCAAACTATGAAGAGCTTCAGGCTAAAA 828
> Ahg928904 jgi|Araly1|928904|scaffold_301361.1
Length=385
Score = 178 bits (96), Expect = 1e-43
Identities = 118/129 (91%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 1244 GAAGCTGACAAGTCCTGCAAAGTGATGTCGGGTAGATTCTTCCCTGAAAATGCCTGCCTC 1303
|||||||||||||||||||||||||| | ||||||| |||||| ||||| || |||| ||
Sbjct 240 GAAGCTGACAAGTCCTGCAAAGTGATCTTGGGTAGACTCTTCCGTGAAAGTGGCTGCGTC 299
Query 1304 AAAGGTACAGCCATTATTACTGCTGTGGTTCTAGCTGCTGTAGCTGTACTAGCTTCCAAC 1363
|||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||
Sbjct 300 AAAGGTACAGCCATTATTACTGCTGTGGTTCTAGCTGCTGCAGTTATACTATCTTCCAAC 359
Query 1364 CTGTAGGCT 1372
|||||||||
Sbjct 360 CTGTAGGCT 368
> Ahg313192 jgi|Araly1|313192|fgenesh1_pm.C_scaffold_1001972
Length=3810
Score = 158 bits (85), Expect = 2e-37
Identities = 323/432 (75%), Gaps = 39/432 (9%)
Strand=Plus/Plus
Query 420 CTTCCAAATTTCACGTAGCAG-TATTTGTTGCACTAGCAATGGTATTGCGTAATG-AACC 477
|||| |||| ||| || || | ||||||| || |||||||||| |||||||| | ||||
Sbjct 680 CTTCAAAATCTCAGGTTGC-GATATTTGTGGCGGTAGCAATGGTTTTGCGTAA-GAAACC 737
Query 478 TAATACTTTGGTTATTGTATTGCCGACTCTCAAGGAAG-A---CGAGTATCAAGGACATG 533
| || |||| || | ||||||| ||| | ||| || | | ||||||| ||||| |
Sbjct 738 TGATGCTTTAACTAATATATTGCCAACT-TTGAGGGAGAATCCCAAGTATCAGGGACAAG 796
Query 534 ACAAGCTTCCGA-TTTTAGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATTTATCTGTA 592
| |||||||| | || |||||||||||||||||||||||||||||||||| |||| |||
Sbjct 797 ATAAGCTTCC-AGTTACAGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATATATCAGTA 855
Query 593 GGCTTGTATTCATGGTCGTGTAACTTGTTACCAGTATTTTACCAAGAAAACTTGTTACCA 652
|||||||| || ||| || ||||||||||| || | | | | | | | |
Sbjct 856 GGCTTGTACTCGTGGGCGCACAACTTGTTACCGGTGGT---C-A-GTAG-C-----A--A 902
Query 653 GTATCCCGTAGCAACTC-TCAGTCAATGGATCTCATCCTGCAGTTGGCTGAGATGATT-T 710
| | || |||| || |||||||| |||||||||||| ||||||| ||||| || | |
Sbjct 903 G-A----GTTGCAA-TCCTCAGTCAAGGGATCTCATCCTTCAGTTGGTTGAGA-GAATCT 955
Query 711 TGTCTAATCTTGATG-CTCGGACTATACTTGTAAACGGAACCGTTATAGATAA--ACAGC 767
|||| || | || | | ||||| ||||||||||| || | |||| || | | |||
Sbjct 956 TGTCCAACCC-GAAGGCCCGGACCATACTTGTAAATGGGGCTGTTAG-GA-AGGGAGAGC 1012
Query 768 GACTGATTTCACCTTATGCATTTGAGCTCTTGATGCGGCTTACATTCCCTGCTTCATCTG 827
|| ||||| ||||| | | |||||| ||||| | || |||||||||||||| ||||| |
Sbjct 1013 GATTGATTCCACCTCCTTCGTTTGAGATCTTGGTTCGACTTACATTCCCTGCATCATCCG 1072
Query 828 AAAGAGTAAAGG 839
|||||| ||||
Sbjct 1073 CAAGAGTGAAGG 1084
> Ahg346720 jgi|Araly1|346720|fgenesh1_pg.C_scaffold_5000112
Length=1908
Score = 134 bits (72), Expect = 3e-30
Identities = 137/167 (82%), Gaps = 10/167 (6%)
Strand=Plus/Plus
Query 946 TTCTTTGATAATAGCTGGAAGAA-GAAATCTTGTTTTAGCCAAGGAAGCTACAGCAATCG 1004
|||||||| | ||||| | |||| |||||| ||||||| || || ||||||| |||||||
Sbjct 1044 TTCTTTGAGATTAGCT-GCAGAAGGAAATCCTGTTTTACCCCAGCAAGCTACCGCAATCG 1102
Query 1005 CTGTCTGGTCTCTGACCGA-AAACGTAGATTGCTGCAAGCAG-TGGGAAAAACTCTATTG 1062
|| || ||||||||||| | || | | |||||||| |||||| ||| || | ||| ||
Sbjct 1103 CTATCAGGTCTCTGACC-ATAATCTTTGATTGCTGGAAGCAGAGGGGCAATA-TCT-CTG 1159
Query 1063 GGA-GAAT-AAAGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAGA 1107
|| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 1160 AGATGAATCTAA-AAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAGA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5