BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11900.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928910 jgi|Araly1|928910|scaffold_301367.1 2145 0.0
> Ahg928910 jgi|Araly1|928910|scaffold_301367.1
Length=1340
Score = 2145 bits (1161), Expect = 0.0
Identities = 1269/1323 (96%), Gaps = 0/1323 (0%)
Strand=Plus/Plus
Query 68 GGCGATGGCGATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTAATAAA 127
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 18 GGCGATGGCAATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTGATAAA 77
Query 128 ATCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAAACGCTCGGTAA 187
| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 78 ACCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAGACGCTTGGTAA 137
Query 188 CATTATCGTCTCCATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCATCGC 247
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 138 CATTATCGTCTCAATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCGTCGC 197
Query 248 CGGTTGGTTAGCCGGATCTCTCGGTGTCATTATCGTCGGATTCGCCACCTATTACTGCAT 307
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 198 CGGTTGGTTCGCCGGATCTCTCGGCGTCATTATCGTCGGATTCGCCACCTATTACTGCAT 257
Query 308 GCTCCTCCTCATTCAGTGCAGAGATAAGCTAGAATCGGAAGAAGGAGAAGAAGAATCGAA 367
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 258 GCTCCTCCTCATTCAATGTAGAGATAAGCTAGAATCGGAACAAGGAGAAGAAGAATCGAA 317
Query 368 AACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATT 377
Query 428 CCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCGTATTTAGTGTTCATAGGTCGAAA 487
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 378 CCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCTTATCTAGTGTTCATAGGACGAAA 437
Query 488 CTTGTCATCCATATTTAGTTCGTATGGGTTAAGTATGGTTTCTTTCATATTGATTCTGGT 547
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 438 CTTGTCATCCATATTTAGTTCATATGGGTTAAGTATGGTGTCTTTCATCTTGATTCTGGT 497
Query 548 TCCAATCGAAGTTGGATTGTCGTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTAT 607
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 498 TCCAATCGAAGTTGGATTGTCTTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTAT 557
Query 608 CTTTGCTGATATATGCAACATCATAGCAATGTGTTTTGTTGTCAAAGAAAATGTGGAAAT 667
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 558 CTTTGCTGATATATGCAACATTATAGCAATGTGTTTCGTTGTCAAAGAAAATGTGGAAAT 617
Query 668 GGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACTGCTATTTCGTCTACCATTGGTGG 727
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 618 GGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACCGCTATTTCGTCTACCATTGGTGG 677
Query 728 TTTACCTTTTGCTGGAGGAGTTGCGGTGTTCTGTTTTGAGGGTTTTGCAATGACGTTGGC 787
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 678 TTTACCTTTTGCTGGAGGAGTTGCGGTCTTCTGTTTTGAGGGTTTTGCAATGACGTTGGC 737
Query 788 TTTGGAGAGTTCTATGAGGGAAAGAGAAGCTTTCCCTAAATTGTTAGCTAAAGTGCTTGC 847
||| || | ||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 738 TTTAGAAAATTCAATGAGGGAGAGAGAAGCTTTCCCTAAGTTGTTAGCTAAAGTGCTTGC 797
Query 848 CGGGATTACGTTTGTCTATGTGTTGTTCGGGTTTTGTGGTTATATGGCTTATGGTGATCA 907
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 798 GGGGATTACGTTTGTCTATGTGTTGTTTGGGTTTTGTGGTTATATGGCTTATGGCGATCA 857
Query 908 AACAAAGGATATCATCACTCTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTTCAGAT 967
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 858 AACAAAGGATATCATCACACTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTGCAGAT 917
Query 968 TGGGTTATGTGTGGGATTGACGTTTACATTTCCGATCATGGTACATCCGCTTAACGAGAT 1027
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 918 TGGGTTATGTGTGGGATTGACGTTTACATTCCCGATTATGGTACATCCGCTTAATGAGAT 977
Query 1028 CATAGAGCAGAAACTGAAGAGGATAGACTGGCTTCAAAAGCATCATAATGGGTACAGCAA 1087
|||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 978 CATAGAGCAGAAACTGAAGAAGATAGATTGGCTTCAAAAGCATCATCATGGGTACAGCAA 1037
Query 1088 CGAAACAGGTTCAGTCTCAAAATTTGCAATCTTTACAACGAGGACACTTTTGGTGGTAGG 1147
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 1038 CGAAACAGGTTCAGTCTCAAAATGTGCAATCTTTATAACGAGGACGCTTTTGGTGGTAGG 1097
Query 1148 ACTTGCAGCAATCGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAG 1207
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ACTTGCAGCAATTGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAG 1157
Query 1208 TACTTTGTGCGCACTCATCTCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGG 1267
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TACTTTGTGTGCACTCATATCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGG 1217
Query 1268 TCCATCACTAAATGTATGGAACAAATCCATCGACGTATTCATTGTGATTTGCGGGTTGAT 1327
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |
Sbjct 1218 TCCATCACTAAATGTATGGAACAAATCCGTCGATGTATTCATCGTGATTTGCGGGTTGCT 1277
Query 1328 CTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGAAAAGGGATAGCATGTGA 1387
|||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||
Sbjct 1278 CTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGAAAATGGAAACCAAGTGA 1337
Query 1388 TCT 1390
|||
Sbjct 1338 TCT 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5