BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11910.1
Length=3841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317971 jgi|Araly1|317971|fgenesh1_pm.C_scaffold_3000987 5657 0.0
Ahg487470 jgi|Araly1|487470|fgenesh2_kg.6__604__AT5G06600.1 3657 0.0
> Ahg317971 jgi|Araly1|317971|fgenesh1_pm.C_scaffold_3000987
Length=3348
Score = 5657 bits (3063), Expect = 0.0
Identities = 3255/3350 (97%), Gaps = 4/3350 (0%)
Strand=Plus/Plus
Query 124 ATGACTATGATGACTCCGCCGCCGCTAGATCAGCAGGAAGACGAGGAGATGCTTGTTCCG 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTATGATGACTCCGCCGCCGCTTGATCAGCAGGAAGACGAGGAGATGCTTGTTCCG 60
Query 184 AATCCGGATTTGGTCGAGGGACCTCAGCCTATGGAAGTTGCCCAAACTGATCCTGCTGCT 243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AATCCGGATTTGGTCGAGGGACCTCAGCCTATGGAAGTTGCCCAAACTGAGCCTGCTGCT 120
Query 244 ACCGCTGTGGAGAATCCACCACCCGAGGATCCTCCAAGTCTGAAATTCACGTGGACCATC 303
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ACCGCCGTGGAGAATCCGCCACCCGAGGATCCTCCAACTCTGAAATTCACGTGGACCATC 180
Query 304 CCAATGTTCACTAGGCTCAATACCAGGAAGCATTACTCTGACGTATTTGTTGTAGGCGGT 363
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 181 CCAATTTTCACTAGGCTCAATACCAGGAAGCATTACTCTGATGTATTTGTTGTTGGCGGT 240
Query 364 TATAAGTGGCGTATATTGATTTTTCCCAAAGGAAACAATGTCGACCATTTGTCAATGTAC 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATAAATGGCGTATATTGATTTTTCCCAAAGGAAACAATGTCGACCATTTGTCAATGTAC 300
Query 424 TTGGATGTTGCTGATGCTGCGAATTTGCCGTACGGGTGGAGCAGATATTCACAGTTCAGT 483
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TTGGATGTTGCTGACGCCGCGAATTTGCCGTATGGGTGGAGCAGATATTCACAGTTCAGT 360
Query 484 CTGGCTGTAGTGAATCAAGTCAACAACCGATATTCCATCAGAAAGGAGACGCAACATCAA 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGGCTGTAGTGAATCAAGTCAACAACCGATATTCCATCAGAAAGGAGACGCAACATCAA 420
Query 544 TTCAATGCAAGAGAAAGCGACTGGGGGTTTACATCATTCATGCCTCTCAGCGAGCTCTAT 603
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAATGCAAGAGAAAGCGATTGGGGGTTTACATCATTCATGCCTCTCAGCGAGCTCTAT 480
Query 604 GAACCCACTCGAGGATATTTAGTGAATGACACTGTTCTGATTGAAGCTGAAGTTGCTGTG 663
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 GATCCCACTCGAGGATATTTAGTGAATGACATTGTTCTGATTGAAGCTGAAGTTGCTGTG 540
Query 664 CGTAAAGTTCTTGATTATTGGTCATATGACTCaaaaaaaGAGACAGGTTTTGTTGGACTA 723
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 CGTAAAGTTCTTGATTACTGGTCATATGACTCAAAAAAAGAGACTGGTTTTGTTGGACTA 600
Query 724 AAAAACCAAGGTGCTACCTGTTACATGAATTCTCTCCTGCAGACTTTATACCACATACCT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAAACCAAGGTGCTACCTGTTACATGAATTCTCTCCTGCAGACTTTATACCACATACCT 660
Query 784 TACTTTAGAAAGGCTGTTTACCACATGCCAACGACTGAAAATGATGCACCTACCGCTAGT 843
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 TACTTCAGAAAGGCTGTGTACCACATGCCAACGACTGAAAATGATGCACCTACTGCTAGT 720
Query 844 ATCCCATTGGCGCTCCAGAGTTTATTTTACAAGCTTCAGTATAATGATACCAGTGTAGCG 903
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCCCATTGGCGCTCCAGAGTTTGTTTTACAAGCTTCAGTATAATGATACCAGTGTAGCG 780
Query 904 ACAAAGGAGCTGACAAAGTCGTTTGGTTGGGATACATATGATTCTTTTATGCAACATGAT 963
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 ACAAAGGAGCTGACAAAGTCGTTTGGTTGGGATACATATGATTCTTTCATGCAACATGAT 840
Query 964 GTACAAGAACTCAACAGAGTTCTCTGTGAAAAGCTTGAGGACAAGATGAAGGGAACTGTT 1023
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTCCAAGAACTCAACCGAGTTCTCTGTGAAAAGCTTGAGGACAAGATGAAGGGAACTGTT 900
Query 1024 GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATT 1083
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 GTGGAGGGAACAATACAAAAGCTATTTGAGGGTCACCACATGAATTACATTGAGTGCATT 960
Query 1084 AATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGACCTCCAGCTTGATGTTAAA 1143
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||
Sbjct 961 AATGTAGATTACAAATCTACACGAAAAGAATCATTCTATGACCTCCAGCTTGATGTCAAA 1020
Query 1144 GGCTGCAAAGATGTATATGCTTCTTTTGACAAGTATGTTGAAGTTGAACGCCTTGAAGGA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGCTGCAAAGATGTATATGCTTCTTTTGACAAGTATGTTGAAGTTGAACGCCTTGAAGGA 1080
Query 1204 GACAACAAATACCATGCAGAAGGACATGATTTGCAGGATGCaaaaaaaGGTGTTCTATTC 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GACAACAAATACCATGCAGAAGGACATGATTTGCAGGATGCAAAAAAAGGTGTTCTATTC 1140
Query 1264 ATAGACTTTCCACCAGTTCTTCAACTTCAGCTCAAGAGGTTTGAATACGATTTTATGAGG 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATAGACTTTCCACCAGTTCTTCAACTTCAGCTCAAGAGGTTTGAATACGATTTTATGAGG 1200
Query 1324 GACACAATGGTGAAGATTAATGATCGGTATGAGTTTCCTCTCCAACTGGATCTCGACAGA 1383
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 GACACAATGGTGAAGATCAATGATCGGTATGAGTTTCCTCTTCAACTGGATCTCGACAGA 1260
Query 1384 GAAGA-TGGAAGATATTTATCCCCTGATGCAGACAAGAGTGTCCGCAATCTCTACACCCT 1442
|| || ||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1261 GA-GAATGGAAAATATTTATCCCCTGATGCAGACAAGAGTGTTCGCAATCTCTACACCCT 1319
Query 1443 CCACAGTGTCTTGGTTCACAGTGGAGGAGTGCATGGAGGGCATTATTATGCTTTTATTAG 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CCACAGTGTCTTGGTTCACAGTGGAGGAGTGCATGGAGGGCATTATTATGCTTTTATTAG 1379
Query 1503 GCCAACACTTTCAGATCAGTGGTATAAATTTGACGATGAACGGGTCACGAAAGAAGATGT 1562
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1380 GCCAACACTTTCAGATCAGTGGTATAAATTTGATGATGAACGGGTAACGAAGGAAGATGT 1439
Query 1563 CAAAAGAGCACTGGAAGAGCAATATGGTGGTGAAGAAGAGTTACCGCAGAATAATCCTGG 1622
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAAAAGGGCACTGGAAGAGCAATATGGTGGTGAAGAAGAGTTACCGCAGAATAATCCTGG 1499
Query 1623 TTTCAATAATCCACCTTTCAAATTCACAAAATACTCGAATGCATACATGCTTGTTTATAT 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTTCAATAATCCACCTTTCAAATTCACAAAATACTCGAATGCATACATGCTTGTTTATAT 1559
Query 1683 TCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACA 1742
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TCGGGAAAGTGACAAGGACAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACA 1619
Query 1743 TTTGCGGGTGAGGCTgaaaaaagaacaagaagaaaaggaagataaaagaaaaTACAAGGC 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TTTGCGGGTGAGGCTGAAAAAAGAACAAGAAGAAAAGGAAGATAAAAGAAAATACAAGGC 1679
Query 1803 TCAAGCTCACCTTTTCACGACAATCAAGGTCGCAAGAGATGATGACATCACTGAGCAAAT 1862
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1680 TCAAGCTCACCTTTTCACGACAATCAAGGTCGCAAGGGATGATGACATCACTGAGCAAAT 1739
Query 1863 TGGAAAGAATATATATTTTGATCTTGTTGATCATGAAAAAGTGAGGAGTTTTCGAATCCA 1922
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1740 TGGAAAGAATATATATTTTGATCTTGTTGATCATGAAAAAGTTCGGAGTTTTCGAATCCA 1799
Query 1923 GAAACAGACCCCCTTTCAACAATTTAAGGAAGAGGTAGCCAAAGAGTTTGGTGTCCCGGT 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GAAACAGACCCCCTTTCAACAATTTAAGGAAGAGGTAGCCAAAGAGTTTGGTGTCCCGGT 1859
Query 1983 TCAACTACAGCGGTTCTGGATCTGGGCAAAGCGTCAAAACCATACTTACCGCCCCAATCG 2042
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1860 TCAACTACAGCGGTTCTGGATCTGGGCAAAGCGTCAAAACCATACTTATCGCCCCAATCG 1919
Query 2043 TCCCCTATCACCTAATGAAGAATTACAGACGGTTGGACAAATACGAGAGGCATCTAACAA 2102
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1920 TCCCCTATTACCTAATGAAGAATTACAGACGGTTGGACAAATAAGAGAGGCATCTAACAA 1979
Query 2103 GGCAAACAATGCTGAGCTAAAGCTGTTTTTGGAAATAGAGCGTGGACCGGATGACCTTCC 2162
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1980 GGCAAACAATGCTGAACTAAAGCTGTTTTTGGAAATAGAGCGTGGACCGGATGATCTTCC 2039
Query 2163 TATTCCTCCCCCAGAAAAAACTTCTGAGGATATCCTTCTTTTCTTTAAACTCTATGACCC 2222
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2040 TATTCCTCCCCCAGAAAAATCTTCTGAAGATATCCTTCTTTTCTTTAAACTCTATGACCC 2099
Query 2223 TGAGAACGCAGTACTAAGATATGTTGGCAGGCTAATGGTGAAAAGTTCCAGTAAGCCCAT 2282
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 TGAGAATGCAGTACTAAGATATGTTGGCAGGCTAATGGTGAAAAGTTCCAGTAAGCCCAT 2159
Query 2283 GGATATAGTAGGGCAATTGAATAAAATGGCTGGTTTTGCTCCTGATGAGGAAATAGAACT 2342
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2160 GGATATAGTAGGGCAACTGAATAAAATGGCTGGTTTTGCTCCTGATGAGGAAATTGACCT 2219
Query 2343 TTTTGAGGAAATAAAGTTTGAACCTTGCGTAATGTGTGAACAGATTG-ATAAGAAGACTT 2401
|||||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct 2220 TTTTGAGGAAATTAAGTTTGAACCTTGTGTAATGTGTGAACA-ACTGGATAAGAAGACTT 2278
Query 2402 CTTTCAGGCTGTGTCAAATTGAAGATGGAGATATCATTTGTTATCAGAAACCTCTTTCTA 2461
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2279 CTTTCAGGCTGTGTCAAATTGAAGATGGAGATATCATTTGTTATCAGAAACCTCTATCTA 2338
Query 2462 TCGAGGAGAGTGAATTTCGATACCCAGATGTGCCATCATTTTTGGAGTATGTACAGAATC 2521
|| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 TCCAGGAGAGTGAATGTCGCTACCCAGATGTGCCATCATTTTTGGAGTATGTACAGAATC 2398
Query 2522 GAGAGCTGGTGCGTTTTCGCACACTGGAAAAACCAAAAGAGGATGAGTTTACTATGGAGC 2581
||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||
Sbjct 2399 GAGAGCTGGTGCGTTTTCGTACACTGGAAAAACCAAAAGAAGACGAATTTACTATGGAGC 2458
Query 2582 TGTCAAAGCTGCACACTTATGATGATGTAGTGGAAAGGGTGGCTGAGAAGCTTGGCCTTG 2641
||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2459 TGTCAAAGCAGCACACTTATGATGATGTTGTGGAAAGAGTGGCTGAGAAGCTTGGCCTTG 2518
Query 2642 ACGATCCATCAAAACTTAGGCTTACATCTCACAATTGCTACTCTCAGCAACCCAAGCCTC 2701
| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2519 ATGATCCATCGAAACTTAGACTTACATCTCACAATTGCTACTCCCAGCAACCCAAGCCTC 2578
Query 2702 AGCCAATCAAATACCGTGGAGTAGATCATCTTTCAGATATGTTAGTTCACTATAATCAGA 2761
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2579 AGCCAATCAAATACCGTGGAGTAGATCATCTTTCAGATATGTTAGTTCACTACAATCAGA 2638
Query 2762 CGTCTGACATATTGTATTATGAAGTTTTGGATATTCCTCTTCCAGAATTGCAAGGTCTTA 2821
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2639 CGTCTGACATTTTGTATTATGAAGTTCTGGATATTCCTCTTCCAGAATTGCAAGGTCTTA 2698
Query 2822 AGACTCTAAAAGTAGCTTTCCATAGTGCCACAAAGGATGAAGTGATAATCCACAATATCA 2881
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2699 AGACTCTAAAAGTGGCTTTCCATAGTGCCACAAAGGATGAAGTGATAATCCACAATATCA 2758
Query 2882 GACTACCTAAGCAGAGTACTGTTGGAGATGTTATTAACGAACTGAAAACAAAGGTGGAGC 2941
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2759 GACTACCTAAGCAGAGTACTGTTGGAGATGTTATTAACGATCTGAAAACAAAGGTGGAGC 2818
Query 2942 TTTCGCATCAAGATGCAGAACTGAGGTTACTTGAGGTCTTTTTCCACAAGATCTACAAGA 3001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2819 TTTCGCATCAAGATGCAGAACTGAGGTTACTTGAGGTCTTTTTCCACAAGATCTACAAGA 2878
Query 3002 TCTTTCCATCTACTGAACGAATTGAAAACATCAATGACCAGTACTGGACTTTACGAGCAG 3061
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2879 TCTTTCCATCTACTGAAAGAATTGAAAACATCAATGACCAGTACTGGACTTTACGAGCAG 2938
Query 3062 AGGAGATACCTGAAGAAGAGAAGAATATTGGTCCCAATGATAGGTTAATTCACGTATATC 3121
| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2939 AAGAGATACCTGACGAAGAGAAGAATATTGGTCCCAATGATCGGTTAATTCACGTATATC 2998
Query 3122 ATTTTACTAAAGAGGCCGGACAAAATCAGCAAGTTCAAAATTTTGGGGAACCCTTCTTTT 3181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2999 ATTTTACTAAAGAGGCCGGACAAAATCAGCAAGTACAAAATTTTGGGGAACCCTTCTTTT 3058
Query 3182 TGGTAATCCACGAAGGTGAAACTTTAGAAGAAATCAAGACCCGTATCCAAAAGAAACTCC 3241
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 3059 TGGTAATCCACGAAGGTGAAACTTTAGAAGAAATCAAGATCCGTATCCAAAAAAAACTCC 3118
Query 3242 ATGTCCCTGATGAGGACTTTGCCAAGTGGAAGTTTGCATCGTTTTCAATGGGACGTCCTG 3301
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 3119 ATGTCCCTGATGAGGACTTTGCCAAGTGGAAGTTTGCATCTTTTTCATTGGGACGTCCTG 3178
Query 3302 ATTACTTGCTGGACACAGATGTTGTTTATAATCGCTTTCAGAGAAGAGATGTATACGGTG 3361
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 3179 ATTACTTGCAGGACACAGACGTTGTTTATAATCGCTTTCAGAGAAGAGATGTATACGGCG 3238
Query 3362 CGTGGGAGCAGTATCTTGGGTTGGAGCACATTGATAATGCTCCTAAAAGGGCTTATGCTG 3421
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3239 CGTGGGAGCAGTATCTTGGGTTGGAGCACATTGACAATGCTCCTAAAAGGGCTTATGCTG 3298
Query 3422 CAAATCAGAACCGACACGCATACGAGAAGCCGGTGAAAATATACAATTAG 3471
| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3299 CGAATCAGAACCGACATGCATACGAGAAGCCGGTGAAAATATACAATTAG 3348
> Ahg487470 jgi|Araly1|487470|fgenesh2_kg.6__604__AT5G06600.1
Length=3842
Score = 3657 bits (1980), Expect = 0.0
Identities = 2983/3463 (86%), Gaps = 86/3463 (2%)
Strand=Plus/Plus
Query 53 ctttcattgttctctctg-ttcggc-g-ctctcttct-acttctctcGATCCGACCGT-G 107
|||| ||| || |||||| ||| | | ||||||| | ||| ||||||||| |||||
Sbjct 35 CTTTGATT-TT-TCTCTGCATCGTCGGTCTCTCTTTTGCCTT-TCTCGATCCCACCGTCA 91
Query 108 AATCAC-TAT-CGGAGCAATGACTATGATGACTCCGCC-GCCGCTAGATCAG-CAGGAAG 163
|||| | | | ||| |||||||||||||||||||||| ||| | |||||| || ||||
Sbjct 92 AATC-CTTCTCCGG-CCAATGACTATGATGACTCCGCCTCCCG-TTGATCAGCCA-GAAG 147
Query 164 ACGAGGAGATGCTTGTTCCGAATCCGGATTTGGTCGA-GGGAC--CTCAGCCTATGGAAG 220
| |||||||||||||| |||||| | ||||||||||| || | ||||||| |||||||
Sbjct 148 ATGAGGAGATGCTTGTGCCGAATTCAGATTTGGTCGACGGTCCTGCTCAGCCCATGGAAG 207
Query 221 TTGCCCAAACTGATCCTGCTGCTACCGCTGTGGAGAATCCA-CCACCCGAGGATCCTCCA 279
|| ||||| | || ||||||| | |||||||||| ||| ||| | |||||||||||
Sbjct 208 TTACCCAACCCGAGACTGCTGCGAGTACTGTGGAGAA-CCAGCCAGCTGAGGATCCTCCT 266
Query 280 AGTCTGAAATTCACGTGGACCATCCC-AATGTTCACTAGGCTCAATACCAGGAAGCATTA 338
| |||||||||||||||||| ||||| ||| ||| |||||| || ||||||||||||||
Sbjct 267 ACTCTGAAATTCACGTGGACTATCCCTAAT-TTCTCTAGGCAAAACACCAGGAAGCATTA 325
Query 339 CTCTGACGTATTTGTTGTAGGCGGTTATAAGTGGCGTATATTGATTTTTCCC-AAAGGAA 397
||| || |||||||| || || ||||| || ||||| ||||| | ||||||| ||||| |
Sbjct 326 CTCCGATGTATTTGTCGTTGGAGGTTACAAATGGCGCATATT-AATTTTCCCGAAAGGGA 384
Query 398 ACAATGTCGACCATTTGTCAATGTACTTGGATGTTGCTGATGCTGCGAATTTGCCGTACG 457
||||||| || |||||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct 385 ACAATGTTGATCATTTGTCCATGTACTTGGATGTTTCTGATGCTGCGAGTTTGCCGTACG 444
Query 458 GGTGGAGCAGATATTCACAGTTCAGTCTGGCTGTAGTGAATCAAGTCAACAACC-GATAT 516
| |||||||||||| | |||||||||||||||||||| |||||| || || || |||||
Sbjct 445 GATGGAGCAGATATGCTCAGTTCAGTCTGGCTGTAGTCAATCAAATCCAC-TCCAGATAT 503
Query 517 TCCATCAGAAAGGAGACGCAACATCAATTCAATGCAAGAGAAAGCGACTGGGGGTTTACA 576
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 504 ACCATTAGAAAGGAGACGCAACATCAATTCAATGCTAGAGAAAGCGATTGGGGATTTACA 563
Query 577 TCATTCATGCCTCTCAGCGAGCTCTATGAACCCACTCGAGGATATTTAGTGAATGACACT 636
|||||||||||||| || || || ||||| || | | |||||||||||| |||||| |||
Sbjct 564 TCATTCATGCCTCTAAGTGAACTTTATGATCCTAGTAGAGGATATTTAGCGAATGATACT 623
Query 637 GTTCTGATTGAAGCTGAAGTTGCTGTGCGTAAAGTTCTTGATTATTGGTCATATGACTCa 696
||| || ||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct 624 GTTTTGGTTGAAGCTGAAGTCGCTGTACGTAAGGTTCTTGATTACTGGTCATATGACTCT 683
Query 697 aaaaaaGAGACAGGTTTTGTTGGACTAAAAAACCAAGGTGCTACCTGTTACATGAATTCT 756
||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||||
Sbjct 684 AAAAAAGAGACTGGTTTTGTTGGACTCAAGAACCAAGGTGCAACTTGTTACATGAATTCT 743
Query 757 CTCCTGCAGACTTTATACCACATACCTTACTTTAGAAAGGCTGTTTACCACATGCCAACG 816
||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 744 CTCCTACAGACACTATACCACATACCTTACTTCAGAAAGGCTGTATACCACATGCCGACA 803
Query 817 ACTGAAAATGATGCACCTACCGCTAGTATCCCATTGGCGCTCCAGAGTTTATTTTACAAG 876
||||| || ||| ||| || || ||||| || ||||| ||||| ||||| |||||||||
Sbjct 804 ACTGAGAACGATTTACCCACAGCAAGTATACCTTTGGCTCTCCAAAGTTTGTTTTACAAG 863
Query 877 CTTCAGTATAATGATACCAGTGTAGCGACAAAGGAGCTGACAAAGTCGTTTGGTTGGGAT 936
|| || |||||||| || ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 864 CTCCAATATAATGACACTAGTGTTGCAACAAAGGAGCTGACAAAGTCTTTTGGTTGGGAT 923
Query 937 ACATATGATTCTTTTATGCAACATGATGTACAAGAACTCAA-CAGAGTTCTCTGTGAAAA 995
||||||||||| ||||||||||||||||| ||||||||||| | | |||||||| |||||
Sbjct 924 ACATATGATTCCTTTATGCAACATGATGTGCAAGAACTCAATC-GGGTTCTCTGCGAAAA 982
Query 996 GCTTGAGGACAAGATGAAGGGAACTGTTGTGGAGGGAACAATACAA-AAGCTATTTGAAG 1054
|||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 983 GCTTGAGGACAAAATGAAGGGAACTGTTGTGGAGGGAACAATACAACAA-CTATTTGAGG 1041
Query 1055 GTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGT 1114
| ||||| |||||||| ||||||||||| |||||||||| |||||| ||||||||||| |
Sbjct 1042 GCCACCATATGAATTATATTGAGTGCATAAATGTAGATTTCAAATCGACACGGAAAGAAT 1101
Query 1115 CATTTTATGACCTCCAGCTTGATGTTAAAGGCTGCAAAGATGTATATGCTTCTTTTGACA 1174
||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1102 CATTTTACGACCTTCAGCTGGATGTGAAAGGCTGCAAGGATGTTTATGCTTCTTTTGACA 1161
Query 1175 AGTATGTTGAAGTTGAACGCCTTGAAGGAGACAACAAATACCATGCAGAAGGACATGATT 1234
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||
Sbjct 1162 AGTATGTTGAAGTTGAACGTCTTGAAGGAGATAACAAATATCATGCAGAAGGACATGGTT 1221
Query 1235 TGCAGGATGCaaaaaaaGGTGTTCTATTCATAGACTTTCCACCAGTTCTTCAACTTCAGC 1294
| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 1222 TACAGGATGCAAAAAAAGGTGTTCTTTTCATTGACTTTCCACCGGTTCTTCAACTCCAGC 1281
Query 1295 TCAAGAGGTTTGAATACGATTTTATGAGGGACACAATGGTGAAGATTAATGATCGGTATG 1354
|||||||||||||||| || |||||||||||||| ||||| ||||| || ||||||||||
Sbjct 1282 TCAAGAGGTTTGAATATGACTTTATGAGGGACACCATGGTAAAGATAAACGATCGGTATG 1341
Query 1355 AGTTTCCTCTCCAACTGGATCTCGACAGAGAAGATGG-AAGATATTTATCCCCTGATGCA 1413
|||||||||| |||||||||| || |||||| |||| ||| ||| | || ||||||||
Sbjct 1342 AGTTTCCTCTTGAACTGGATCTTGATAGAGAAAATGGAAAG-TATCTGTCTCCTGATGCT 1400
Query 1414 GACAAGAGTGTCCGCAATCTCTACACCCTCCACAGTGTCTTGGTTCACAGTGGAGGAGTG 1473
|||| |||||||||||| || || || || ||||||||||| ||||| |||||||||||
Sbjct 1401 GACAGGAGTGTCCGCAACCTTTATACTCTTCACAGTGTCTTAGTTCATAGTGGAGGAGTA 1460
Query 1474 CATGGAGGGCATTATTATGCTTTTATTAGGCCAACACTTTCAGATCAGTGGTATAAATTT 1533
||||| ||||| ||||| |||||||| || || || || |||||||||||||||||||||
Sbjct 1461 CATGGTGGGCACTATTACGCTTTTATAAGACCTACGCTCTCAGATCAGTGGTATAAATTT 1520
Query 1534 GACGATGAACGGGTCACGAAA-GAAGATGTCAAAAGAGCACTGGAAGAGCAATATGGTGG 1592
|| |||||||| || || ||| |||||| | ||||| ||| |||| ||||||||||||||
Sbjct 1521 GATGATGAACGCGTAAC-AAAGGAAGATTTGAAAAGGGCATTGGAGGAGCAATATGGTGG 1579
Query 1593 TGAAGAAGAGTTACCGCAGAATAATCCTGGTTTCAATAATCCACCTTTCAAATTCACAAA 1652
|||||||||| |||| |||| |||||||||||||||||| || |||||||||||||||||
Sbjct 1580 TGAAGAAGAGCTACCACAGACTAATCCTGGTTTCAATAACCCTCCTTTCAAATTCACAAA 1639
Query 1653 ATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTG 1712
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1640 GTACTCGAATGCTTACATGCTTGTTTATATCCGGGAAAGTGACAAGGATAAAATAATCTG 1699
Query 1713 CAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGGTGAGGCTgaaa-aaagaacaag 1771
||||||||||||||||||||| || |||||||| |||||||||| ||| ||||| ||||
Sbjct 1700 CAACGTTGATGAGAAAGACATAGCAGAACATTTAAGGGTGAGGCT-AAAGAAAGAGCAAG 1758
Query 1772 aagaaaaggaagataaaagaaaaTACAAGGCTCAAGCTCACCT-TTTCACGACAATCAAG 1830
||||||||||||||||||||| ||||||||| ||||||||||| | | || | ||| |||
Sbjct 1759 AAGAAAAGGAAGATAAAAGAAGATACAAGGCACAAGCTCACCTATAT-ACAATAATTAAG 1817
Query 1831 GTCGCAAGAGATGATGA-CATCACTGAGCAAATTGGAAAGAATATATATTTTGATCTTGT 1889
|| ||||||||||| || | | | || ||||| || ||| |||||||||||||||||||
Sbjct 1818 GTTGCAAGAGATGAAGATC-TTAAGGAACAAATCGGGAAGGATATATATTTTGATCTTGT 1876
Query 1890 TGATCATGAAAAAGTGAGGAGTTTTCGAATCCAGAAACAGACCCCCTTTCAACAATTTAA 1949
|| ||||| ||||| | ||||| || |||||||||||||| || |||||||| |||||
Sbjct 1877 GGACCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAA 1936
Query 1950 GGAAGAGGTAGCCAAAGAGTTTGGTGTCCCGGTTCAACTACAGCGGTTCTGGATCTGGGC 2009
||| |||||||||||||| |||||||| || ||||| ||||| |||||||||| |||||
Sbjct 1937 GGAGGAGGTAGCCAAAGAATTTGGTGTACCTGTTCAGTTACAGAGGTTCTGGATTTGGGC 1996
Query 2010 AAAGCGTCAAAACCATACTTACCGCCCCAATCGTCCCC-TATCACCT-AATGAAGAATTA 2067
||||| ||||||||||| || || |||||||| |||| || | ||| || || ||||||
Sbjct 1997 TAAGCGACAAAACCATACCTATCGTCCCAATCGCCCCCTTA-CGCCTCAA-GAGGAATTA 2054
Query 2068 CAGAC-GGTTGGACAAATACGAGAGGCATCTAACAAGGCAAACAATGCTGAGCTAAAGCT 2126
|| || ||||||||||||| |||| ||||||||||||||||||| ||| || ||||||||
Sbjct 2055 CA-ACAGGTTGGACAAATAAGAGAAGCATCTAACAAGGCAAACACTGCAGAACTAAAGCT 2113
Query 2127 GTTT-TTGGAAATAGAGCGTGGACC-GGA-TGACCTTCCTATTCCTCCCCCAGAAAAAAC 2183
||| ||||| |||||| ||| ||| | | | |||||||||||| || |||||| |
Sbjct 2114 -TTTCCTGGAAGTAGAGC----ACCTGGATTTA-CGTCCTATTCCTCCTCCTGAAAAATC 2167
Query 2184 TTCTGAGGATATCCTTCTTTTCTTTAAACTCTATGACCCTGAGAACGCAGTACTAAGATA 2243
|| ||||| || ||||||||||| || |||||||| ||||| |||||| |||| ||
Sbjct 2168 AAAAGAAGATATTCTGCTTTTCTTTAAGCTTTATGACCCCGAGAAGGCAGTATTAAGCTA 2227
Query 2244 TGTTGGCAGGCTAATGGTGAAAAGTTCCAGTAAGCCCATGGATAT-AGTAGGGCAA-TTG 2301
|| |||||||| ||||||||||||||||||||||| |||||||| | | || || ||
Sbjct 2228 TGCAGGCAGGCTGATGGTGAAAAGTTCCAGTAAGCCTATGGATATAACT-GGAAAACTT- 2285
Query 2302 AATAAAATGGCTGGTTTTGCTCCTGATGAGGAAATAGAACTTTTTGAGGAAATAAAGTTT 2361
||| |||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2286 AATGAAATGGTTGGCTTTGCTCCTGATGAAGAAATAGAACTTTTTGAGGAAATCAAGTTT 2345
Query 2362 GAACCTTGCGTAATGTGTGAACAGATT-GATAAGAAGACTTCTTTCAGGCTGTGTCAAAT 2420
|||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct 2346 GAACCTTGTGTTATGTGCGAACA-CTTGGATAAGAAAACTTCATTCAGATTGTGTCAAAT 2404
Query 2421 TGAAGATGGAGATATCATTTG-TTATCAGAAACCTCT-TTCTATCGAGGAGAGTGAATTT 2478
|||||||||||| |||||||| || |||||||||||| | || | |||||| ||| |
Sbjct 2405 TGAAGATGGAGACATCATTTGCTT-TCAGAAACCTCTAGT-TAACAAGGAGATTGAGTGC 2462
Query 2479 CGATACCCAGATGTGCCATCATTT-TTGGAGTATGTACAGAATC-GAGAGCTGGTGCGTT 2536
|| ||||||| |||||| || ||| || || ||||| ||||| | || ||||||| || |
Sbjct 2463 CGCTACCCAGCTGTGCCTTCGTTTCTT-GAATATGTCCAGAA-CAGACAGCTGGTCCGGT 2520
Query 2537 TTCGCACACTGGAAAAACCAAAAGAGGATGAGTTTACTATGGAGCTGTCAAAGCTGCACA 2596
|||| | ||||||||||| ||||| ||||||||| | ||||| |||| ||||||||||
Sbjct 2521 TTCGTGCTCTGGAAAAACCTAAAGAAGATGAGTTTGTTCTGGAGTTGTCGAAGCTGCACA 2580
Query 2597 CTTATGATGATGTAGTGGAAAGGGTGGCTGAGAAGCTTGGCCTTGACGATCCATCAAAAC 2656
||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 2581 CTTATGACGATGTTGTGGAAAAAGTGGCTGAGAAGCTTGGTCTTGACGATCCATCCAAAC 2640
Query 2657 TTAGGCTTACATCTCACAATTGCTACTCTCAGCAACCCAAGCCTCAGCCAATCAAATACC 2716
||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||
Sbjct 2641 TTAGGCTTACATCTCACAATTGCTATTCCCAGCAACCTAAGCCTCAGCCTATCAAATACC 2700
Query 2717 GTGGAGTAGATCATCTT-TCAGATATGTTAGTTCACTATAATCAGACGTCTGACATATTG 2775
|||||||||| ||| || |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2701 GTGGAGTAGACCAT-TTGTCAGATATGTTAGTTCACTACAATCAGACGTCTGACATTTTG 2759
Query 2776 TATTATGAAGTTTTGGATATTCCTCTTCCAGAATTGCAAGGTCTTAAGA-CTCTAAAAGT 2834
|||||||||||| |||| ||||||||||||||||||||||||||||| | || |||||||
Sbjct 2760 TATTATGAAGTTCTGGACATTCCTCTTCCAGAATTGCAAGGTCTTAAAACCT-TAAAAGT 2818
Query 2835 AGCTTTCCAT-AGTGCCACAAAGGATGAAGTGATAATCCACAATATCAGACTACCTAAGC 2893
||||||||| | |||||| ||||| |||||| ||||||||||||||||||||||||| |
Sbjct 2819 TGCTTTCCATCA-TGCCACGAAGGAAGAAGTGGTAATCCACAATATCAGACTACCTAAAC 2877
Query 2894 AGAGTACTGTTGGAGATGTTATTAACGAACTGAAAACAAAGGTGGAGCTTTCGCATCAAG 2953
| || || || |||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 2878 AAAGCACGGTCGGAGATGTTATTAATGAACTTAAAACAAAGGTGGAGCTTTCGCATCCAG 2937
Query 2954 ATGCAGAACTGAGGTTACTTGAGGTCTTTTTCCACAAGATCTACAAGATCTTT-CCATCT 3012
||||||||||||| || || ||||| |||| |||||||||||||||||| ||| |||||
Sbjct 2938 ATGCAGAACTGAGATTGCTCGAGGTGTTTTACCACAAGATCTACAAGAT-TTTCCCATCA 2996
Query 3013 ACTGAACGAATTGAAAACATCAATGACCAGTACTGGACTTTACGAGCAGAGGAGATACCT 3072
|||||| ||||||| || || |||||||||||||||||||||||||| |||||||| ||
Sbjct 2997 ACTGAAAGAATTGAGAATATAAATGACCAGTACTGGACTTTACGAGCTGAGGAGATTCCG 3056
Query 3073 GAAGAAGAGAAGAATATTGGTCCCAATGATAGGTTAATTCACGTATATCATTTTACTAAA 3132
||||||||||||||||| ||||| |||||| | ||||||| || || |||||| ||||
Sbjct 3057 GAAGAAGAGAAGAATATCGGTCCAAATGATCGCTTAATTCTTGTGTACCATTTTGCTAAG 3116
Query 3133 GAGGCCGGACAAAATCAGCAAGTTCAAAATTTTGGGGAACCCTTCTTTTTGGTAATCCAC 3192
||| | ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||
Sbjct 3117 GAGACTGGACAAAATCAGCAAGTGCAAAACTTTGGCGAGCCCTTCTTCTTGGTAATCCAT 3176
Query 3193 GAAGGTGAAACT-TTAGAAGAAATCAAGACCCGTATCCAAAAGAAACTCCATGT-CCCTG 3250
|||||||||||| || |||||||| |||| ||||||||||||||| || ||||| || |
Sbjct 3177 GAAGGTGAAACTCTT-GAAGAAATAAAGAACCGTATCCAAAAGAAGCTTCATGTATCC-G 3234
Query 3251 ATGAGGACTTTGCCAAGTGGAAGTTTGCATCGTT-T-TCAATGGGACGTCCTGATTACTT 3308
|||||||||||||||||||||||||||| | || | |||||||| ||||| || |||||
Sbjct 3235 ATGAGGACTTTGCCAAGTGGAAGTTTGCGT--TTATGTCAATGGGGCGTCCAGAGTACTT 3292
Query 3309 GCTGGACACAGATGTTGTTTATAATCGCTTTCAGAGAAGAGATGTATACGGTGCGTGGGA 3368
| |||||||||||||||||||||||||||||||||||||||||| || ||||| | ||
Sbjct 3293 ACAGGACACAGATGTTGTTTATAATCGCTTTCAGAGAAGAGATGTCTATGGTGCTTTTGA 3352
Query 3369 GCAGTATCTTGGGTTGGAGCACATTGATAATGCTCCTAAAAGGGCTTATGCTGCAAATCA 3428
|||||| || ||||||||||| ||| | | ||||||| ||||||||||||||||| ||
Sbjct 3353 GCAGTACCTCGGGTTGGAGCATGCTGACACTACTCCTAAGAGGGCTTATGCTGCAAACCA 3412
Query 3429 GAACCGACACGCATACGAGAAGCCGGTGAAAATATACAATTAG 3471
|||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3413 GAACCGCCACGCTTACGAGAAGCCGGTGAAAATATACAATTAG 3455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145151583422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5