BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G11920.1 Length=1893 Score E Sequences producing significant alignments: (Bits) Value Ahg904078 jgi|Araly1|904078|Al_scaffold_0003_1206 2726 0.0 > Ahg904078 jgi|Araly1|904078|Al_scaffold_0003_1206 Length=1890 Score = 2726 bits (1476), Expect = 0.0 Identities = 1750/1879 (93%), Gaps = 31/1879 (2%) Strand=Plus/Plus Query 32 AAAATCCGAGAAAATCTGAGAAAGTAACAAACGGCAAAAGTTACACTATCTCTTCGGATA 91 ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 26 AAAATCCGAGAAATTCTGAGAAAGTAACAAACGGCCAAAGTTGCACTATCTCTTCGGATA 85 Query 92 TTGTTTCACCTCCATATTCAAATTCAAATCCCATCAGTGATCACGTACATCCCGCCACAC 151 ||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||||| Sbjct 86 TTGTTTCTCCTCCATATTCAAATTCAAATCCCATGAGCGATCACGGACATCCCGCCACAC 145 Query 152 CCATTCCTGAAGCCGTCTCTCAAAGTCCGATGAAAGAAATCTCAATCGATGATCCTTATC 211 |||||| ||||||||||||||||| ||||||||| |||||||||||||||||| | |||| Sbjct 146 CCATTCGTGAAGCCGTCTCTCAAAATCCGATGAAGGAAATCTCAATCGATGATTCATATC 205 Query 212 TCCCACCACATCCTCAGCTACCGAAACTTGAACCGCCACGTGGCCGTCGTGTCTCTTTAG 271 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 206 TTCCACCACATCCTCAGCTACCGAAACTTGAGCCGCCACGTGGCCGTCGTGTCTCTTTAG 265 Query 272 AAGAATTATTGCATCCGA-AAGAGAAATTCACCGGCGATTTGATGAAATTCATACGCCAA 330 ||||||| |||||||| | ||||||||||||| |||| ||||||||||| |||| ||| Sbjct 266 AAGAATTGTTGCATCC-ACCGGAGAAATTCACCGCCGATCTGATGAAATTCGTACGTCAA 324 Query 331 AGCGGGAACGCGATTTCGAAACGCATCTCGGTTTTGCTAGAG-A--ACGACGA-T--GA- 383 |||||||||||||||||||||||||||||||||||||||||| | ||||||| | || Sbjct 325 AGCGGGAACGCGATTTCGAAACGCATCTCGGTTTTGCTAGAGAACGACGACGACTCCGAC 384 Query 384 -C---GACGAC--TCGATCGATGACGTGACCGAGTTCAAAATCTCTGGAGTGAAAGTTCT 437 | || ||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 385 TCGAAGAAGACGATCGAT-GATGACGTGACCGAGTTCAAAATCTCTGGAGTCAAAGTTCT 443 Query 438 CGTGAAGATGAAAAACGAAGAAGAAATCAAAGGTCGTATAACTTTCTTCTCCAGATCTAA 497 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 444 CGTGAAGATGAAAACCGAAGAAGAAATCAGAGGTCGTATAACTTTCTTCTCCAGATCTAA 503 Query 498 CTGCCGAGATTCAACCGCCGTCAGATTGTTTCTCCGGGAACGAGGATTTGATTTCTCGGA 557 |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| Sbjct 504 TTGCCGAGATTCAACCGCCGTCAGATTGTTTCTCCGGGAACAAGGCTTCGATTTCTCGGA 563 Query 558 GATCAACATCGACGTGTATTCGTCAAGAGAGAAAGAGCTGGTTGAAAGAACAGGGAGTTC 617 |||||||||||| |||||| || ||||||||||||||||| | ||||||||||||||||| Sbjct 564 GATCAACATCGATGTGTATACGGCAAGAGAGAAAGAGCTGATCGAAAGAACAGGGAGTTC 623 Query 618 TCAAGTTCCTCAGATTTTCTTCAACGAGAAACACTTCGGAGGATTAATGGCGTTGAATTC 677 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 624 TCAAGTCCCTCAGATTTTCTTCAACGAGAAACACTTCGGAGGATTAATGGCGCTGAATTC 683 Query 678 TCTGAGAAACAGTGGTGAATTTGATCGGAGGGTTAAGGAGTTTTTGAAGGAGAAGTGTTG 737 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 684 TCTGAGAAACAGTGGTGAATTTGATCTGAGGGTTAAGGAGTTTTTGAAGGAGAAGTGTTG 743 Query 738 CGGCGATGCACCGTTGCCGGTGATGTATGGATTCGACGAAGAGAGTAATAATAAGGAtgt 797 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 744 CGGCGATGCACCGGCGCCGGTGATGTATGGATTCGACGAAGAGAG---TAATAAGGA--- 797 Query 798 tgttgttgttgttgATGAGATGATGAGATTCGTTAGGGTTTTGAGACAGAAGCTACCGAT 857 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 798 TGTTGTTGTTGTTGATGAGATTTTGAGATTCGTTAGGGTTTTGAGACAGAAGCTACCGAT 857 Query 858 TAAGGATCGTTTGATGAAGATGAAGATTGTTAAGAACTGTTTCTCCGGCGCCGAGATGGT 917 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 858 TAAGGATCGTTTGTTGAAGATGAAGATCGTTAAGAACTGTTTCTCCGGCGCCGAGATGAT 917 Query 918 CGAGATTCTCATTGATTACTTGGATTGCGGGAGGAAGAAGGCTGTTGAAATAGGCAAGAG 977 |||||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||| Sbjct 918 CGAGATTCTCATTGATTACTTGGATTGCGGGAGGAACAAGGCTGTTGAAGTTGGCATGAG 977 Query 978 GTTAGCCGAGAAACACTTTATCCACCATGTCTTTGGAGAGAACGAGTTTGAAGATGGAAA 1037 | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 GCTAGCCAAAAAACACTTTATCCACCATGTCTTTGGAGAGAACGAGTTTGAAGATGGAAA 1037 Query 1038 TCATTACTACCGTTTCCTAGAGCACGAGCCGTTTGTTTCAAAATGTTACAATTTTAGAGG 1097 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| Sbjct 1038 TCATTACTACCGTTTCCTAGAGCACGAACCGTTTATTTCAAAATGTTACAATTTCAGAGG 1097 Query 1098 TTCTACCAACGACATGGAGCCCCAAAGTGCAGCCATTGTTGGGCAGAAGCTATTCAAAAT 1157 |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| Sbjct 1098 TTCTACCAACGACATGGAGCCCCAAAGTGCAGGCATCGTTGGGCAGAAGCTTTTCAAAAT 1157 Query 1158 CATGACAGCTATTCTCGAGTCTTATTCTTCCAATGACCACACTAGTGTTGATTACATGAG 1217 |||||| |||||||| |||||||||||||||||||||| || ||||||||||| |||| Sbjct 1158 CATGACTGCTATTCTTGAGTCTTATTCTTCCAATGACCGTTCTTGTGTTGATTACCTGAG 1217 Query 1218 AATCAGCCAGAGTGAAGAATTCCGAAGGTACTTGAATTTGGCTCAAGA-CTTCCACCGTT 1276 |||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1218 AATCAGCCAGAGCGAAGAATTCCGAAGGTACTTGAATTTGGCTCAAGACCTT-CACCGTT 1276 Query 1277 TGAATCTTGTGGAACTCTCAACGGAAGAGAAGTTAGCAttttttttGAATTTGTACAACG 1336 ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1277 TGAATATTGTGGAACTCTCAACGGAAGAGAAGTTAGCATTTTTCTTGAACTTGTACAACG 1336 Query 1337 CAATGGTGATTCATGCTTTGATCAGTATCGGACGTCCCGAGGG-GTTGATCGCAAGAAGG 1395 ||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||| Sbjct 1337 CAATGGTGATTCATGCTTTGATCAGAATCGGACGTCCTGAGGGAG-TGATCGCAAGAAGG 1395 Query 1396 TCATTCTTTACGGATTTTCAGTATGTTGTAGGAGGCTACTCTTATTCACTTAGCTCCATC 1455 ||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1396 TCATTTTTTACAGATTTTCAGTACGTCGTAGGAGGCTACTCTTATTCACTTAGCTCCATC 1455 Query 1456 CGAAATGACATCCTTCGTCGCGGTCGAAAACCCTCTTATCCATTTATCAGGCCACCTTTT 1515 ||||||||||||||||| |||||||| | |||||||||||| ||||| | || ||| Sbjct 1456 CGAAATGACATCCTTCGACGCGGTCGCAGACCCTCTTATCCCTTTATTA---TTCCGTTT 1512 Query 1516 AATAACGGCAA-GACACGGCATGAGCTTGGTCTTCTAAAACTGAATCCATTAGTACATTT 1574 | ||||| ||| | |||| ||| ||||||| |||| |||||||||||||||||||||||| Sbjct 1513 ATTAACGACAATG-CACGACATAAGCTTGGACTTCAAAAACTGAATCCATTAGTACATTT 1571 Query 1575 TGGCTTATGCGATGGGACCAAATCAAGTCCTGTGGTGAGGTTTTTCACACCGCAAGGAGT 1634 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1572 TGGCTTATGCGATGGGACCAAATCAAGTCCAGTGGTGAGGTTTTTCACACCGCAAGGAGT 1631 Query 1635 CGAAGCTGAGCTCAAACGAGCAGCTAGAGAGTTTTTTCAAAATGGTGGAATTGAGGTTGT 1694 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1632 TGAAGCTGAACTCAAACGAGCAGCTAGAGAGTTTTTTCAAAATGGTGGAATTGAGGTTGT 1691 Query 1695 CTTGGACAAGAGGACCATACATCTATCAAGAATCATCAAGTGGTACAAAGAGGATTTCAG 1754 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1692 CTTGGACAAGAGGACCATACATCTATCAAAAATCATCAAGTGGTACAAAGAGGATTTCAG 1751 Query 1755 TGAAGAGAAGAAAATGTTGAAGTGGATAATGGGTTATATAGATTCAAATGATGCAGGTCT 1814 ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| Sbjct 1752 TGAAGAGAAGAAAATGTTGAAGTGGATAATGAGTTATATAGATGCAAACGATGCAGGTCT 1811 Query 1815 TTTAACCCATCTGCTTGGTGATGGAGGTGGTTCTTTTAACATCGTTTACCAAGATTATGA 1874 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1812 TTTAACCCATCTTCTTGGTGATGGAGGAGGTTCTTTTAACATCGTTTACCAAGATTATGA 1871 Query 1875 TTGGTCTACCAACAATTGA 1893 |||||||| |||||||||| Sbjct 1872 TTGGTCTATCAACAATTGA 1890 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71114487415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5