BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11920.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904078 jgi|Araly1|904078|Al_scaffold_0003_1206 2726 0.0
> Ahg904078 jgi|Araly1|904078|Al_scaffold_0003_1206
Length=1890
Score = 2726 bits (1476), Expect = 0.0
Identities = 1750/1879 (93%), Gaps = 31/1879 (2%)
Strand=Plus/Plus
Query 32 AAAATCCGAGAAAATCTGAGAAAGTAACAAACGGCAAAAGTTACACTATCTCTTCGGATA 91
||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 26 AAAATCCGAGAAATTCTGAGAAAGTAACAAACGGCCAAAGTTGCACTATCTCTTCGGATA 85
Query 92 TTGTTTCACCTCCATATTCAAATTCAAATCCCATCAGTGATCACGTACATCCCGCCACAC 151
||||||| |||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 86 TTGTTTCTCCTCCATATTCAAATTCAAATCCCATGAGCGATCACGGACATCCCGCCACAC 145
Query 152 CCATTCCTGAAGCCGTCTCTCAAAGTCCGATGAAAGAAATCTCAATCGATGATCCTTATC 211
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||| | ||||
Sbjct 146 CCATTCGTGAAGCCGTCTCTCAAAATCCGATGAAGGAAATCTCAATCGATGATTCATATC 205
Query 212 TCCCACCACATCCTCAGCTACCGAAACTTGAACCGCCACGTGGCCGTCGTGTCTCTTTAG 271
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 206 TTCCACCACATCCTCAGCTACCGAAACTTGAGCCGCCACGTGGCCGTCGTGTCTCTTTAG 265
Query 272 AAGAATTATTGCATCCGA-AAGAGAAATTCACCGGCGATTTGATGAAATTCATACGCCAA 330
||||||| |||||||| | ||||||||||||| |||| ||||||||||| |||| |||
Sbjct 266 AAGAATTGTTGCATCC-ACCGGAGAAATTCACCGCCGATCTGATGAAATTCGTACGTCAA 324
Query 331 AGCGGGAACGCGATTTCGAAACGCATCTCGGTTTTGCTAGAG-A--ACGACGA-T--GA- 383
|||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||
Sbjct 325 AGCGGGAACGCGATTTCGAAACGCATCTCGGTTTTGCTAGAGAACGACGACGACTCCGAC 384
Query 384 -C---GACGAC--TCGATCGATGACGTGACCGAGTTCAAAATCTCTGGAGTGAAAGTTCT 437
| || ||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 385 TCGAAGAAGACGATCGAT-GATGACGTGACCGAGTTCAAAATCTCTGGAGTCAAAGTTCT 443
Query 438 CGTGAAGATGAAAAACGAAGAAGAAATCAAAGGTCGTATAACTTTCTTCTCCAGATCTAA 497
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 444 CGTGAAGATGAAAACCGAAGAAGAAATCAGAGGTCGTATAACTTTCTTCTCCAGATCTAA 503
Query 498 CTGCCGAGATTCAACCGCCGTCAGATTGTTTCTCCGGGAACGAGGATTTGATTTCTCGGA 557
|||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 504 TTGCCGAGATTCAACCGCCGTCAGATTGTTTCTCCGGGAACAAGGCTTCGATTTCTCGGA 563
Query 558 GATCAACATCGACGTGTATTCGTCAAGAGAGAAAGAGCTGGTTGAAAGAACAGGGAGTTC 617
|||||||||||| |||||| || ||||||||||||||||| | |||||||||||||||||
Sbjct 564 GATCAACATCGATGTGTATACGGCAAGAGAGAAAGAGCTGATCGAAAGAACAGGGAGTTC 623
Query 618 TCAAGTTCCTCAGATTTTCTTCAACGAGAAACACTTCGGAGGATTAATGGCGTTGAATTC 677
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 624 TCAAGTCCCTCAGATTTTCTTCAACGAGAAACACTTCGGAGGATTAATGGCGCTGAATTC 683
Query 678 TCTGAGAAACAGTGGTGAATTTGATCGGAGGGTTAAGGAGTTTTTGAAGGAGAAGTGTTG 737
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 684 TCTGAGAAACAGTGGTGAATTTGATCTGAGGGTTAAGGAGTTTTTGAAGGAGAAGTGTTG 743
Query 738 CGGCGATGCACCGTTGCCGGTGATGTATGGATTCGACGAAGAGAGTAATAATAAGGAtgt 797
||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 744 CGGCGATGCACCGGCGCCGGTGATGTATGGATTCGACGAAGAGAG---TAATAAGGA--- 797
Query 798 tgttgttgttgttgATGAGATGATGAGATTCGTTAGGGTTTTGAGACAGAAGCTACCGAT 857
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 798 TGTTGTTGTTGTTGATGAGATTTTGAGATTCGTTAGGGTTTTGAGACAGAAGCTACCGAT 857
Query 858 TAAGGATCGTTTGATGAAGATGAAGATTGTTAAGAACTGTTTCTCCGGCGCCGAGATGGT 917
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 858 TAAGGATCGTTTGTTGAAGATGAAGATCGTTAAGAACTGTTTCTCCGGCGCCGAGATGAT 917
Query 918 CGAGATTCTCATTGATTACTTGGATTGCGGGAGGAAGAAGGCTGTTGAAATAGGCAAGAG 977
|||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||
Sbjct 918 CGAGATTCTCATTGATTACTTGGATTGCGGGAGGAACAAGGCTGTTGAAGTTGGCATGAG 977
Query 978 GTTAGCCGAGAAACACTTTATCCACCATGTCTTTGGAGAGAACGAGTTTGAAGATGGAAA 1037
| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GCTAGCCAAAAAACACTTTATCCACCATGTCTTTGGAGAGAACGAGTTTGAAGATGGAAA 1037
Query 1038 TCATTACTACCGTTTCCTAGAGCACGAGCCGTTTGTTTCAAAATGTTACAATTTTAGAGG 1097
||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct 1038 TCATTACTACCGTTTCCTAGAGCACGAACCGTTTATTTCAAAATGTTACAATTTCAGAGG 1097
Query 1098 TTCTACCAACGACATGGAGCCCCAAAGTGCAGCCATTGTTGGGCAGAAGCTATTCAAAAT 1157
|||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 1098 TTCTACCAACGACATGGAGCCCCAAAGTGCAGGCATCGTTGGGCAGAAGCTTTTCAAAAT 1157
Query 1158 CATGACAGCTATTCTCGAGTCTTATTCTTCCAATGACCACACTAGTGTTGATTACATGAG 1217
|||||| |||||||| |||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1158 CATGACTGCTATTCTTGAGTCTTATTCTTCCAATGACCGTTCTTGTGTTGATTACCTGAG 1217
Query 1218 AATCAGCCAGAGTGAAGAATTCCGAAGGTACTTGAATTTGGCTCAAGA-CTTCCACCGTT 1276
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1218 AATCAGCCAGAGCGAAGAATTCCGAAGGTACTTGAATTTGGCTCAAGACCTT-CACCGTT 1276
Query 1277 TGAATCTTGTGGAACTCTCAACGGAAGAGAAGTTAGCAttttttttGAATTTGTACAACG 1336
||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1277 TGAATATTGTGGAACTCTCAACGGAAGAGAAGTTAGCATTTTTCTTGAACTTGTACAACG 1336
Query 1337 CAATGGTGATTCATGCTTTGATCAGTATCGGACGTCCCGAGGG-GTTGATCGCAAGAAGG 1395
||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||
Sbjct 1337 CAATGGTGATTCATGCTTTGATCAGAATCGGACGTCCTGAGGGAG-TGATCGCAAGAAGG 1395
Query 1396 TCATTCTTTACGGATTTTCAGTATGTTGTAGGAGGCTACTCTTATTCACTTAGCTCCATC 1455
||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1396 TCATTTTTTACAGATTTTCAGTACGTCGTAGGAGGCTACTCTTATTCACTTAGCTCCATC 1455
Query 1456 CGAAATGACATCCTTCGTCGCGGTCGAAAACCCTCTTATCCATTTATCAGGCCACCTTTT 1515
||||||||||||||||| |||||||| | |||||||||||| ||||| | || |||
Sbjct 1456 CGAAATGACATCCTTCGACGCGGTCGCAGACCCTCTTATCCCTTTATTA---TTCCGTTT 1512
Query 1516 AATAACGGCAA-GACACGGCATGAGCTTGGTCTTCTAAAACTGAATCCATTAGTACATTT 1574
| ||||| ||| | |||| ||| ||||||| |||| ||||||||||||||||||||||||
Sbjct 1513 ATTAACGACAATG-CACGACATAAGCTTGGACTTCAAAAACTGAATCCATTAGTACATTT 1571
Query 1575 TGGCTTATGCGATGGGACCAAATCAAGTCCTGTGGTGAGGTTTTTCACACCGCAAGGAGT 1634
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1572 TGGCTTATGCGATGGGACCAAATCAAGTCCAGTGGTGAGGTTTTTCACACCGCAAGGAGT 1631
Query 1635 CGAAGCTGAGCTCAAACGAGCAGCTAGAGAGTTTTTTCAAAATGGTGGAATTGAGGTTGT 1694
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 TGAAGCTGAACTCAAACGAGCAGCTAGAGAGTTTTTTCAAAATGGTGGAATTGAGGTTGT 1691
Query 1695 CTTGGACAAGAGGACCATACATCTATCAAGAATCATCAAGTGGTACAAAGAGGATTTCAG 1754
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1692 CTTGGACAAGAGGACCATACATCTATCAAAAATCATCAAGTGGTACAAAGAGGATTTCAG 1751
Query 1755 TGAAGAGAAGAAAATGTTGAAGTGGATAATGGGTTATATAGATTCAAATGATGCAGGTCT 1814
||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 1752 TGAAGAGAAGAAAATGTTGAAGTGGATAATGAGTTATATAGATGCAAACGATGCAGGTCT 1811
Query 1815 TTTAACCCATCTGCTTGGTGATGGAGGTGGTTCTTTTAACATCGTTTACCAAGATTATGA 1874
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1812 TTTAACCCATCTTCTTGGTGATGGAGGAGGTTCTTTTAACATCGTTTACCAAGATTATGA 1871
Query 1875 TTGGTCTACCAACAATTGA 1893
|||||||| ||||||||||
Sbjct 1872 TTGGTCTATCAACAATTGA 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5