BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11940.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478543 jgi|Araly1|478543|fgenesh2_kg.3__1244__AT3G11940.2 1339 0.0
Ahg482719 jgi|Araly1|482719|fgenesh2_kg.4__1779__AT2G37270.2 747 0.0
> Ahg478543 jgi|Araly1|478543|fgenesh2_kg.3__1244__AT3G11940.2
Length=838
Score = 1339 bits (725), Expect = 0.0
Identities = 761/778 (98%), Gaps = 3/778 (0%)
Strand=Plus/Plus
Query 109 CAGCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGCGCTCACTAACGAAG 168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 63 CAGCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGCGCTCACTAACGAGG 122
Query 169 TCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGGTCACAGACATCAGTCTTGTTG 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGGTCACAGACATCAGTCTTGTTG 182
Query 229 ACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAAGAT 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAAGAT 242
Query 289 ACTCTGTGAAGAGATTCAGGAAGGCTCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTC 348
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 243 ACTCTGTGAAGAGATTCAGGAAGGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTC 302
Query 349 TCATGATGCACGGGAGGAACAACGGTAAGAAATTGATGGCTGTCAGGATCGTCAAGCACG 408
|||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 303 TCATGATGCATGGGAGGAACAACGGTAAGAAATTGATGGCAGTGAGGATCGTCAAGCATG 362
Query 409 CCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATTCAGGTCATCATTGACGCCA 468
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 363 CCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATCCAGGTCATCATTGACGCCA 422
Query 469 TTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTAGGA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTAGGA 482
Query 529 GACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAGGCTATCTTCTTGATTACCA 588
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 483 GACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAAGCTATCTTCTTGATTACCA 542
Query 589 CTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATG 602
Query 649 AATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGATGAGA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGATGAGA 662
Query 709 TTGAAAGAGTTGCCAAGGCTAATCGTTAAGGATTTTCCCTTTGCCCTGTGCGTTACAATC 768
||||||||||||||||||| |||||||||||||||||| |||||| || | |||||||||
Sbjct 663 TTGAAAGAGTTGCCAAGGCCAATCGTTAAGGATTTTCCTTTTGCCTTGAGGGTTACAATC 722
Query 769 TCGTATCAATGAGTTTAATGTTTTATCTTCATTTAGATTGAAATATGTATCTCAGATGTT 828
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 T--TATCAATGAGTTTAATGTTTTATCTTCATTTAGATTGAAATATGTATCTCAGATGTT 780
Query 829 T-GCTCTTTTGTTTTATGAAGTTTATTTCGTCTGAACTACTTTGAATAGATAAATTTT 885
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 781 TTGCTCTTTTGTTTTATGAAGTTTATTTCGTCCGAACTACTTTGAATAGATAAATTTT 838
> Ahg482719 jgi|Araly1|482719|fgenesh2_kg.4__1779__AT2G37270.2
Length=892
Score = 747 bits (404), Expect = 0.0
Identities = 564/642 (88%), Gaps = 8/642 (1%)
Strand=Plus/Plus
Query 109 CAGCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGC-GCTCACTAACGAA 167
||| |||||||||| ||| ||| | ||||| ||||||||||| | ||| || || ||
Sbjct 77 CAGTCATGGCCACCTCCGTAGAAATCGACGCCGAGATTCAGCA-ACAGCTTACCAATGAG 135
Query 168 GTCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGGTC-ACAGACATCAGTCTTGT 226
|| |||||||||||||| |||| || ||| |||||| ||| | || | || ||||||||
Sbjct 136 GTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGG-CTACTCATATTAGTCTTGT 194
Query 227 TGACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAAG 286
||||||||||| |||||| |||| || || || || |||||||| ||||| ||||| ||
Sbjct 195 GGACTACATTGGTGTTCAGCCAGCGAAGCACGCAACTTTTGTTCCTCACACTGCTGGGAG 254
Query 287 ATACTCTGTGAAGAGATTCAGGAAGGCTCAGTGCCCCATTGTTGAGAGGCTCACCAACTC 346
||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 255 ATACTCTGTGAAGAGGTTCAGAAAGGCTCAATGCCCAATTGTTGAGAGGCTCACTAACTC 314
Query 347 TCTCATGATGCACGGGAGGAACAACGGTAAGAAATTGATGGCTGTCAGGATCGTCAAGCA 406
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 315 TCTCATGATGCACGGAAGGAACAACGGTAAGAAGTTGATGGCTGTCAGGATCGTCAAGCA 374
Query 407 CGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATTCAGGTCATCATTGACGC 466
||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 375 TGCCATGGAGATCATCCACCTCTTGTCTGACTTGAACCCAATTCAAGTTATCATTGATGC 434
Query 467 CATTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTAG 526
|||||| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||
Sbjct 435 CATTGTTAACAGTGGTCCTCGTGAAGATGCTACAAGGATTGGATCTGCTGGTGTGGTTAG 494
Query 527 GAGACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAGGCTATCTTCTTGATTAC 586
||| || ||||||||||||||||||||||||||||| ||||| || ||||||||| | ||
Sbjct 495 GAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAGCAATCTTCTTGCTCAC 554
Query 587 CACTGGTGCTCGTGAAGCTGC-TTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTG 645
||||||||| ||||||||||| ||| |||||||||||||| || ||||||||||||||||
Sbjct 555 CACTGGTGCACGTGAAGCTGCCTTT-AGAAACATCAAGACAATCGCTGAGTGCCTTGCTG 613
Query 646 ATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGATG 705
||||| | ||||| || || ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 614 ATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCATCAAGAAGAAAGATG 673
Query 706 AGATTGAAAGAGTTGCCAAGGCTAATCGTTAAGG-AT-TTTC 745
||||||| |||||||| ||||| ||||||||||| || ||||
Sbjct 674 AGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTTTC 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5