BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11945.2
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928915 jgi|Araly1|928915|scaffold_301372.1 1555 0.0
> Ahg928915 jgi|Araly1|928915|scaffold_301372.1
Length=1199
Score = 1555 bits (842), Expect = 0.0
Identities = 916/951 (96%), Gaps = 7/951 (1%)
Strand=Plus/Plus
Query 314 GGTTGGTGCTGCTGAGTCTGA-TGATCCAGTGCTGGATAGAATTGCCCGGTTCCAAAATG 372
|||||||||||||| | || |||||||||||||||||||||| |||||||||||||||
Sbjct 240 GGTTGGTGCTGCTG-G---GACTGATCCAGTGCTGGATAGAATTACCCGGTTCCAAAATG 295
Query 373 CTTGCTGGAGATTTCTTAGACCCCATACAATCCGCGGAACAGCTTTAGGATCCACTGCCT 432
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 296 CTTGCTGGAGATTTCTTAGGCCCCATACAATCCGTGGAACAGCTTTAGGATCCACCGCCT 355
Query 433 TGGTGACAAGAGCTTTGATAGAGAACACTCATTTGATCAAATGGAGTCTTGTACTAAAGG 492
||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 356 TGGTGGCAAGAGCTTTGATAGAGAATACTCATCTGATCAAATGGAGTCTTGTACTCAAGG 415
Query 493 CACTTTCAGGTCTTCTTGCTCTTATTTGTGGGAATGGTTATATAGTCGGCATCAATCAGA 552
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 416 CACTTTCAGGTCTTCTTGCTCTTATATGTGGGAATGGTTATATAGTCGGCATCAATCAGA 475
Query 553 TCTACGACATTGGAATCGACAAAGTGAACAAACCATACTTGCCAATAGCAGCAGGAGATC 612
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 TCTACGACATTGGTATCGACAAAGTGAACAAACCATATTTGCCAATAGCAGCAGGAGATC 535
Query 613 TATCAGTGCAGTCTGCTTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTG 672
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TATCAGTGCAATCTGCCTGGTTGTTAGTGATATTTTTTGCGATAGCAGGGCTTTTAGTTG 595
Query 673 TCGGATTTAACTTTGGTCCATTCATTACAAGCCTATACTCTCTTGGCCTTTTTCTGGGAA 732
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTGGATTTAACTTTGGTCCATTCATTACAAGCCTATACTCTCTTGGCCTTTTTCTGGGAA 655
Query 733 CCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTA 792
||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 656 CCATCTATTCTGTTCCACCGCTTAGAATGAAAAGATTCCCAATTGCAGCATTTCTTATTA 715
Query 793 TTGCCACGGTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCTC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTGCCACGGTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCTC 775
Query 853 TTGGACTTCCATTTCAGTGGAGTGCACCTGTGGCGTTCATCACATCTTTTGTGACACTGT 912
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 776 TTGGACTTCCATTTCAGTGGAGTGCCCCTGTGGCGTTCATCACATCTTTTGTGACACTGT 835
Query 913 TTGCACTGGTCATTGCTATTACAAAGGACCTTCCTGATGTTGAAGGAGATCGAAAGTTCC 972
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 836 TTGCACTGGTCATTGCTATTACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTTCC 895
Query 973 AAATATCAACCCTGGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGAC 1032
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAATATCAACCTTGGCAACAAAACTTGGAGTGAGAAACATTGCATTCCTCGGTTCTGGAC 955
Query 1033 TTCTGCTAGTAAATTATGTTTCAGCCATATCACTAGCTTTCTACATGCCTCAGGTTTTTA 1092
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 956 TTCTGCTAGTGAACTATGTTTCTGCCATATCACTAGCTTTCTACATGCCTCAGGTTTTCA 1015
Query 1093 GAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAG-GCTTAATTTTCCAGACA 1151
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1016 GAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTC-GTGCTTAATTTTCCAGACA 1074
Query 1152 TGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTATCTCAGGATATTATCGGTTTATA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1075 TGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTATCTCAGGATATTATAGGTTTATA 1134
Query 1212 TGGAATCTCTTCTACGCAGAGTATCTGTTATTCCCCTTCCTCTAGCTTTCA 1262
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1135 TGGAATCTCTTCTACGCAGAGTATCTGTTATTTCCCTTCCTCTAGCTTTCA 1185
Score = 320 bits (173), Expect = 2e-86
Identities = 181/185 (98%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 54 TTTGTGTGGCTAGTGGCATCAATGGAGCTCTCGATCTCACAATCACCGCGTGTTCGGTTC 113
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1 TTTGTGTGGCTAGTGGCATCAATGGAGCTCTCGATCTCGCAATCACCGTGTGTTCGGTTC 60
Query 114 TCGTCTCTGGCGCCTCGTTTCTTAGCAGCTTCTCATCATCATCGTCCTTCTGTGCATTTA 173
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCGTCTCTGGCGCCTCGTTTCTTAGCAGCTTCTCATCATCATCGTTCTTCTGTGCATTTA 120
Query 174 GCTGGGAAGTTTATAAGCCTCCCTCGAGATGTTCGCTTCACGAGCTTATCAACTTCAAGA 233
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GCTGGGAAGTTTATAAGCCTCCCTCGAGATGTTAGCTTCACGAGCTTATCAACTTCAAGA 180
Query 234 ATGCG 238
|||||
Sbjct 181 ATGCG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5