BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G11950.1
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341316 jgi|Araly1|341316|fgenesh1_pg.C_scaffold_3001079 2538 0.0
> Ahg341316 jgi|Araly1|341316|fgenesh1_pg.C_scaffold_3001079
Length=1695
Score = 2538 bits (1374), Expect = 0.0
Identities = 1614/1725 (94%), Gaps = 36/1725 (2%)
Strand=Plus/Plus
Query 130 ATGGATCCTCCTGTGTCGGATCTTGAGAGTATTGAAGATCAGAAAGAAGGAGGACCTTCC 189
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATCCTCCTGTCTCGGATCTTGAGAGTATCGAAGATCAGAAAGAAGGAGGACCTTCC 60
Query 190 TTTCACTGTGATCTTTACGATACACAAGTAGTTCACAAGATTGCTCAGGTTTTTCTCCCT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCACTGTGATCTTTACGATACACAAGTAGTTCACAAGATTGCTCAGGTTTTTCTCCCT 120
Query 250 GGTTTAGCCACTGCTTGTGTCGATAACACTACCGGAGATATCTTCAGGAGTCCTGGTTCT 309
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGATTAGCCACTGCTTGTGTCGATAACACTACCGGCGATATCTTCAGGAGTCCTGGTTCT 180
Query 310 GTTGCTGCTGACATTCGAAAAGAAATGATAGAGTACTTGACTCGTAGAAGCGAAACCTTT 369
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 181 GTGGCTGCTGACATTCGAAAAGAAATGATTGAGTACTTGACTCGTAGAAGCGAAAGCTTT 240
Query 370 GTGGCTGAACACATTGTTCTTCAAGGAGGTTCTGAGATTGAAGCTTCTCATGATCCTTTT 429
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GTGGCTGAACACATTGTTCTTCAAGGTGGTTCTGAGATTGAAGCTTCTCATGATCCTTTT 300
Query 430 GACATTATATCTGATTTCATCGATGATTTCGCCACTTCTAAGCGGAATTTGTTCAGCCGG 489
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GACATTATATCTGATTTCATCGATGATTTCGCAACTTCTAAGCGGAATTTGTTCAGCCGG 360
Query 490 GTTTCGGGTTGGATGCTTAGCGAAAGGAGAGAAGATAATATCGATGATTTCGCGCAAGAG 549
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 361 GTTTCGGGTTGGATGCTTAGCGAAAGAAGGGAAGATAATATAGATGATTTCGCGCAAGAG 420
Query 550 ATGGAGATAAGCGGGTTTTGGTTGACTGATCATAGAGAAGGTATCGCTCAGACTTTGCTT 609
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ATGGAGATAAGCGGCTTCTGGTTGACTGATCATAGAGAAGGGATCGCTCAGACTTTGCTT 480
Query 610 AAAAACGTTGATTTTAAAAGCAGTGCACATTGTGAGATGAAATTCCAAACCGAAGGAGAA 669
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 481 AAAAACGTCGATTTTAAAAGCAGTGCTCATTGTGAGATGAAATTCCAAACCGAGGGAGAA 540
Query 670 CTCGCCGAGCACGCCATGAATTGTGGGTATAGAACAATGAACTGTGAGAATGAGGGTTGT 729
||||| ||||| |||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 541 CTCGCGGAGCATACCATGAGTTGTGGGTATAGAACCATGAACTGTGAGAACGAGGGTTGC 600
Query 730 ACTGCGGTGTTTTGTGCGAATCAGATGGAGAATCACGATTCTGTTTGCCCGTTCAAGA-T 788
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 601 ACTGCGGTCTTTTGCGCGAATCAGATGGAGAATCACGATTCAGTTTGCCCGTTCAAGAAT 660
Query 789 CATTCCGTGTGAGCAGAACTGCTCAGAGAGTATCATGAGACGTGATATGGATAGGCATTG 848
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 -ATTCCGTGTGAGCAGAACTGCTCAGAGAGTATCATGAGACGAGATATGGATAGGCATTG 719
Query 849 TATAACCGTATGTCCTATGAAACTTGTCAACTGTCCATTTCATTCTGTTGGTTGTCTCTC 908
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 720 TATAACCGTATGTCCTATGAAACTTGTCAACTGTCCATTTCATGCTGTTGGTTGTCTATC 779
Query 909 TGATGTACATCAATGTGAGGTCCAACAACATCATTTGGATAATGTTAGCTCTCATTTGAT 968
|||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TGATGTGCATCAATGTGAGGCCCAACAACATCATTTGGATAATGTAAGCTCTCATTTGAT 839
Query 969 GTACATTCTTCGGAGTATTTACAAGGAAGCATCTCTGGATGATCTCAAACCCCGAGCTGA 1028
||||||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||
Sbjct 840 GTACATTCTTCGGAGCATCTACAAGGAAGCATCTCCGGATGATCTCAAACCCCGAACTGA 899
Query 1029 ACAGATACAGCAGTTGTCTACTA-GGTTATCTGAAGCTCGTAATGCAAGATCACTAACAA 1087
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 900 ACAGATACAGCAGTTGTCTAC-ACGGTTATCTGAAGCTCGTAATGCAAGATCACTAACGA 958
Query 1088 ATCTGGTCAAGGAAATTGATGGAAAGCTGGGGCCTTTAGAAATCAAACCAAAGATTGTTA 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATCTGGTCAAGGAAATTGATGGAAAGCTGGGGCCTTTAGAAATCAAACCAAAGATTGTTA 1018
Query 1148 CTGACTCGGAATCCGATAAACCTGAAAATACAGAAAAGAAAGCCTTAGAAGAAGCTGAGA 1207
|| ||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1019 CTAACTTGGAGTCCGATAAACCTGAAAATACAGAAAAGGAAGCATTAGAAGAAGCTGAGA 1078
Query 1208 TTAAAGAAAAACCAGAGACGAGTAACTTAAAAGCTGTTACATTGGAGCAAACCGCGAGAG 1267
| ||||||||||| || || || ||||||||||||| ||||||||||||||||||| ||
Sbjct 1079 TCAAAGAAAAACCGGAAACAAGCAACTTAAAAGCTGGTACATTGGAGCAAACCGCG-GA- 1136
Query 1268 AAGCTCCGGAAGATAAATTGGTTTCAAAAGAAGTAGATGCTGCAATGGTGAAAGAAGCTG 1327
| | | |||| ||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 1137 A-G------A---TAAAGTGGTTTCAAAAGAAGTAAATGATGCAATGGTGGAAGAAGCTG 1186
Query 1328 CAAAGAAAGTTTCAGAAGCTGAGATAGCAGACAATGTTAATGAAGAAGGCGAATTAAAAG 1387
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1187 CAAAGAAAGTTTCAGAAGCTGAGATAGCAGACAATGTTAATGAAGAAGGAGAATTAAAAG 1246
Query 1388 CGCAGAAGCTTTTAGAAATAGGCGAGTTCATCAAAGAAGGAGACAACAACTCTGCAGATG 1447
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1247 CGCAGAAGCTTTTAGAATTAGGCGAGTTCATAAAAGAAGGAGACAACAACTCTGCAGATG 1306
Query 1448 ATTTATCAGAGAGAACCGAAACCAAAGCTCCAGAAGTTGTGGTCATGGATGAGGCTAGAG 1507
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1307 ATTTATCAGAGAGAACCGAAACCAAAGCTCCAGAAGTTGTGGTCATGGATGAGGATAGAG 1366
Query 1508 AGGA-G-G-AGGATAGTGTAGAGACAAAAGACACAAGAACATATGAAACAA-TCAGAGGT 1563
|||| | | |||| |||| ||||||||||||| |||||||| ||||||||| | ||||||
Sbjct 1367 AGGAAGAGGAGGAGAGTGCAGAGACAAAAGACTCAAGAACAAATGAAACAACT-AGAGGT 1425
Query 1564 TTAGAGATTGAAGCCAATGAAATGATTGATGAAGAGACAAAGAAATCGACTGAAACCAAA 1623
|||||||| || | |||| || | |||||||||||||||||||||| |||
Sbjct 1426 TTAGAGAT-GA------T----TGAT-GA--A-GAGACAAAGAAATCGACTGAAATTAAA 1470
Query 1624 ACCGAAGCTCCATCAAGAATAGTCATGGACAAAGAGGGGGATGAAGAGACAAAGAAATCA 1683
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1471 ACCGAAGCTCCATCAAGAATAGTCATGGACAAAGAGGAGGATGAAGAGACGAAGAAATCA 1530
Query 1684 ACTGAAACAGAAACCGAAGCTCCATCGAGAATAGTCATGGAGACAGAGAAGGATGAAGAG 1743
||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 1531 ACTGATACAGAAACCGAAGCTCCATCGAGAATAGTCATGGAGACTGAGGATGATGAAGAG 1590
Query 1744 ACTATGAACTCTAGGGCTCGTGCTTCGGATGAAGCTGAAGCACTGTCAAAGAGCTCTCAA 1803
|| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1591 ACAATGAACTCAAGGGCTCGTGCTTCTGATGAAGCTGAAGCACTCTCAAAGAGCTCTCAA 1650
Query 1804 GGTTTTTCTACGGTGCAAGCTGAAACCGTACCCCATATGTCTTAA 1848
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1651 GGTTTTTCTACGGTGCAAGCGGAAACCGTACCCCATATGTCTTAA 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5