BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12000.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904089 jgi|Araly1|904089|Al_scaffold_0003_1217 1914 0.0
Ahg327420 jgi|Araly1|327420|fgenesh1_pm.C_scaffold_6002640 283 2e-75
> Ahg904089 jgi|Araly1|904089|Al_scaffold_0003_1217
Length=1332
Score = 1914 bits (1036), Expect = 0.0
Identities = 1219/1308 (93%), Gaps = 10/1308 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGGCGTAACACCAAACTATTACCAttcttacacttt--cttcttcttcttcttcg 58
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 26 ATGAGAGGCGTAACACCAAACTATCACCATTCTTACACTTTAATTTCTTCTTCTTCTTCG 85
Query 59 ttgtcttattagctctgtttcttcatgttttctCGATAAACACTTTGTCATCTACAGAAA 118
||||||||||||||||| ||| |||||| |||||||| || |||||||||||||||||||
Sbjct 86 TTGTCTTATTAGCTCTGGTTCGTCATGTGTTCTCGATCAATACTTTGTCATCTACAGAAA 145
Query 119 CTCTAACAATCTCAAGCAACCGAACCATTGTGTCTCCCGGTAACATCTTCGAGCTAGGTT 178
|||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 146 CTCTGACAATCTCAAGCAACCGAACCATTGTATCTCCCGGTAACGTCTTCGAGCTTGGTT 205
Query 179 TCTTCAAAACTACAACAAGCTCTCGAAATGGTGATCATTGGTATCTTGGGATTTGGTACA 238
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 206 TCTTCAAAACCACAACAAGCTCTCGAAATGGTGATCGTTGGTATCTTGGGATTTGGTACA 265
Query 239 AGTCAATCTCTGAGAGAACTTATGTATGGGTTGCCAACAGAGATAACCCTCTTTCCAAGT 298
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
Sbjct 266 AGTCAATCTCTGAGAGAACTTATGTATGGGTTGCTAACAGAGACAATCCTCTTTCCAAAT 325
Query 299 CTATCGGAACATTAAAGATCTCTTACGCTAACCTCGTCCTTCTTGATCATTCTGGTACTC 358
| |||||||||||||| ||||||||||||||| | |||||||||||||||| || |||||
Sbjct 326 CCATCGGAACATTAAAAATCTCTTACGCTAACATTGTCCTTCTTGATCATTATGATACTC 385
Query 359 TTGTTTGGTCAACGAATCTAACGAGAACGGTGAAATCTCCAGTGGTGGCAGAGCTGCTCG 418
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 386 CTGTTTGGTCAACGAATCTGACGAGAATGGTGAAATCTCCAGTGGTGGCAGAGCTTCTCG 445
Query 419 ATAACGGCAACTTCGTGCTTAGAGACTCCAAAGGCAACTATCAAAACCGATTCTTGTGGC 478
||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||
Sbjct 446 ATAACGGCAACTTCGTGCTTAGAGACTTCAAAAGCAACAATCAAAATCGATTCTTGTGGC 505
Query 479 AAAGCTTTGATTATCCGGTGGACACATTACTCCCGGAGATGAAAATTGGTCGGGATCTCA 538
||||||||||||||||||| || || || || ||||||||||||||||||||| ||||||
Sbjct 506 AAAGCTTTGATTATCCGGTTGATACTTTGCTACCGGAGATGAAAATTGGTCGGAATCTCA 565
Query 539 AAACAGGACACGAGACTTTCCTCAGTTCTTGGAGAAGCCCTTATGATCCCTCAAGCGGAG 598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AAACAGGACACGAGAGTTTCCTCAGTTCTTGGAGAAGCCCTTATGATCCCTCAAGCGGAG 625
Query 599 ACTTCTCGTTCAAACTCGGAACTCAAGGGCTACCTGAGTTTTATCTTTTCAAGAAAGAGT 658
|||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 626 GCTTCTCTTTCAAACTCGAAACTCAAGGGCTACCTGAGTTATATCTTTACAAGAAAGAGT 685
Query 659 TTCTATTGTACCGATCCGGTCCGTGGAATGGAGTCGGGTTTAGTGGCATACCGACGATGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTCTATTGTACCGATCCGGTCCGTGGAATGGAGTCGGGTTTAGTGGCATACCGACGATGC 745
Query 719 AAAACTGGAGCTACTTTGACGTTGTTAACAACTTCATAGAGAACAGAGGGGAAGTTGCTT 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 746 AAAACTGGAGCTACTTTGACGTTGTTAACAACTTCATAGAGAACAGAGAGGAAGTTGCTT 805
Query 779 ATAGTTTCAAAGTCACCGACCATAGCATGCACTACGTGAGATTTACACTGACTACCGAAA 838
| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 806 ACAGTTTCAACGTCACCGACCATAGCATGCACTATTTGAGATTTACACTGACTTCCGAAG 865
Query 839 GATTATTACAGATATCCAGATGGGATACGACATCATCGGAATGGAACTTGTTTGGCGTTT 898
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 866 GATTATTACAGATATTCAGATGGGTTACGATATCATCGGAATGGAACTTGTTTGGGGTTT 925
Query 899 TACCGACCGAGAAATGCGATTTGTACCAAATATGTGGTCGTGATAGTTATTGTGACACGA 958
||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 926 TACCGACCGAGAATTGTGATTTGTACCAAATCTGTGGTCGTGACAGTTATTGTGACATGA 985
Query 959 AAACATCACCGACGTGTAACTGTATCAAAGGCTTTGTTCCAAAGAATGTGACGGCTTGGG 1018
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 986 AAACGTCACCGACGTGTAATTGTATCAAAGGCTTTGTTCCAAAGAATGTGACGGCTTGGG 1045
Query 1019 CTTTGGGAGATACATTTGAGGGATGTGTGAGGAAGTCACGACTGAACTGCCACAGAGATG 1078
||||||||||||| || | |||||||||||||||||||| ||||||||||| ||||||
Sbjct 1046 CTTTGGGAGATACGTTCCATGGATGTGTGAGGAAGTCACGGTTGAACTGCCACGGAGATG 1105
Query 1079 GGTTTTTTCTTTTGATGAAGAGGATGAAGCTGCCTGG-TACAAGCACAGCAATTGTGGAC 1137
|||||| || |||||||||||||||||||||| || |||||| ||| || ||||||||
Sbjct 1106 --TTTTTT-TTCTGATGAAGAGGATGAAGCTGCC-GGATACAAGTACAACAGTTGTGGAC 1161
Query 1138 AAGACAATTGGGTTGAATGAATGTAAGGAGAGGTGTTCTAAGGATTGTAATTGTACCGGG 1197
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1162 AAGAGAATTGGGTTGAATGAATGTAAGGAGAGGTGTTCTAAGGATTGTAACTGTACCGGG 1221
Query 1198 TTTGCGAATAAGGATATCCAAAATGGTGGGTCGGGTTGTGTGATTTGGACCGGAGGAGCT 1257
||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 1222 TTTGCGAATAAGGATATCCGAAATGGTGGGTCGGGTTGTGTTATTTGGACCAGAG-AGCT 1280
Query 1258 CATG-GATATGAGGAATTACGTCGTCGGAGGTCAAGATCTATATGTCA 1304
|| | ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1281 CA-GAGATATGAGGAATTACGTCGCCGGAGGTCAAGATCTTTATGTCA 1327
> Ahg327420 jgi|Araly1|327420|fgenesh1_pm.C_scaffold_6002640
Length=1290
Score = 283 bits (153), Expect = 2e-75
Identities = 556/739 (75%), Gaps = 73/739 (10%)
Strand=Plus/Plus
Query 1 ATGAGAGGCGTAACACCAA-A-CTATTACCAttcttacactttcttcttcttcttcttcg 58
||||||||||| || || | ||| |||||| |||||| ||| ||| |||||||
Sbjct 1 ATGAGAGGCGT-AC-GAAACATCTACCACCATTTTTACAC---CTT-TTC--CTTCTTCC 52
Query 59 ttgtcttattagctctgtttcttcatg--ttttc--tCGA--TAAACACTTTGTCATCTA 112
||||| | | | |||| |||| || || ||||| || | | || ||||||||| |||
Sbjct 53 TTGTC-T-TCA-CTCTCTTTCGTCCTGCATTTTCAATCCATGTCAATACTTTGTCACCTA 109
Query 113 CAGAAACTCTAACAATCTCAAGCAACCGAACCATTGTGTCTCCCGGTAACATCTTCGAGC 172
|||| |||| |||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct 110 CAGATTCTCTTACAATCTCAAGCAACCGAACCATTGTGTCTCCTGGTGATGTTTTCGAGC 169
Query 173 TAGGTTTCTTCAAAACTACAACAAGCTCTCGAAATGGTGATCATTGGTATCTTGGGATTT 232
| |||||||||||| | | | | |||| | | | |||||||||||||||||| |
Sbjct 170 TTGGTTTCTTCAAA-C--C--CT--C-CTCGGA-TACTTCTCATTGGTATCTTGGGATAT 220
Query 233 GGTACAAGTCAATCTCTGAGAGAACTTATGTATGGGTTGCCAACAGAGATAACCCTCT-T 291
|||||||| |||||| ||| ||||||||||||||||||| || ||||| |||||||| |
Sbjct 221 GGTACAAGAAAATCTCCGAGCGAACTTATGTATGGGTTGCTAATAGAGACAACCCTCTCT 280
Query 292 TCCAAGT-CTATCGGAACATT-AAAGATCTCTTACGCTAAC--C-TCGTCCTTCTTGATC 346
| | || | || ||||| || ||| ||||| || ||||| | | || || || ||||
Sbjct 281 TG-A-GTTCCATTGGAACTTTCAAA-ATCTCCGACACTAACAACCTGGTTCTCCTCGATC 337
Query 347 ATTCTGGTA-CTCTTGTTTGGTCAACGAATCT-A--ACGAGA-ACGGTGAAATCTCCAGT 401
| || | | |||||||||| |||||||| | || ||| ||| ||| |||||| ||
Sbjct 338 ACTCAAACAACA-TTGTTTGGTCGACGAATCTCACCACAAGAGACG-TGATATCTCCGGT 395
Query 402 GGTGG-C--AGAGCTGCTCGATAACGGCAACTTCGTGCTTAGAGACTCCAA-AGGCAACT 457
||| | | |||||| |||||||| |||||||| ||| | ||| ||||||| | ||||
Sbjct 396 GGTTGTCGTAGAGCTTCTCGATAATGGCAACTTGGTGATGAGATACTCCAACAA-CAACA 454
Query 458 ATCAAA-ACCGA--T---TCT-TGTGGCAAAGCTTT-GATTATCCGGTGGACAC-ATTAC 508
| ||| ||| | | | | ||||||| || ||| ||||||||| || || || ||
Sbjct 455 A-CAACGACCCAAGTGGGTTTCTGTGGCAGAG-TTTCGATTATCCGACAGATACTAT-AC 511
Query 509 TCCCGGAGATGAAAATTGGTCGGGATCTCAAAACAGGA--CA-CGAGACTTTCCTCAGTT 565
| ||||| |||||| ||||| |||||| || || ||| || | ||| || ||| || |
Sbjct 512 TTCCGGAAATGAAACTTGGTTTGGATCTTAATACTGGATTCAAC-AGA-TT-CCTAAGAT 568
Query 566 CTTGGAGAAGCCCTTATGATCCCTCAAGCGGAGACTTCT-CGTTCAAACTCGGAACTCAA 624
|||||||||| || ||||||| |||| ||||| || | ||| |||||||| |||||||
Sbjct 569 CTTGGAGAAGTACTGATGATCCGGCAAGTGGAGA-TTATTCGTACAAACTCGAAACTCAA 627
Query 625 GGGCTACCTGAGTTTTATCTTTTCAA-GAAAGA-GTTTCTATTGTACCGATCCGGTCCGT 682
||| | |||||||||| ||| | | ||| || ||| | || ||||| ||||||| |
Sbjct 628 GGGGTTCCTGAGTTTTTTCTATGGAGTGAA-GACGTTCCAATAC-ACCGAACCGGTCCAT 685
Query 683 GGAATGGAGTCGGGTTTAG 701
|||| ||| || |||||||
Sbjct 686 GGAACGGAATCCGGTTTAG 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5