BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12030.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478555 jgi|Araly1|478555|fgenesh2_kg.3__1256__AT3G12030.1 1016 0.0
Ahg940109 jgi|Araly1|940109|scaffold_600653.1 606 6e-173
> Ahg478555 jgi|Araly1|478555|fgenesh2_kg.3__1256__AT3G12030.1
Length=648
Score = 1016 bits (550), Expect = 0.0
Identities = 617/649 (95%), Gaps = 5/649 (1%)
Strand=Plus/Plus
Query 10 TTTGCGCAACAATGGCGACTACGATTCCACTCTTCGCCTCTTTCAAATACGCCGATAGCT 69
|||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1 TTTGAGCAACAATGGCGACTACGATACCGCTCTTCGCTTCTTTCAAATACGCCGATAGCT 60
Query 70 TAACGGTCGTAGGAATCTCCTTCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCT 129
|||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAACCGTCGTCGGAATCTCCATCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCT 120
Query 130 TAATCTACCGTACCAGCTCATACAAATCCTTGAAATACTCCATTGACAAGGCCACGAAGA 189
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 121 TAATCTACCGCACCAGCTCCTACAAATCCTTGAAATACTCCATTGACAAAGCCGCGAAGA 180
Query 190 AACTCGAGACAATGAAGACAGAGAATCCATCGTCAAAGCTATCCATAAAGAAATCAAAGA 249
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 AACTCGAGACGATGAAGACAGAGAATCCATCGTCGAAGCTATCCATAAAGAAATCAAAGA 240
Query 250 CGAAGAAGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTCT 309
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAAGAAGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTCT 300
Query 310 TCAAGTTCAAATCCGGCGCCGTTGTGGCACTGGTTCTCTTCGTCGTCTTCGGATTGCTCA 369
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 TCAAGTTCAAATCCGGCGCCGTTGTGGCTCTGGTTCTCTTCGTCGTCTTCGGATTGCTCA 360
Query 370 ATTCACTATTCGAAGGTAAAGTCGTCGCGAAGCTTCCTTTCCATCCGATCACGATAGTGA 429
||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 361 ATTCACTCTTCGAAGGTAAAGTAGTCGCGAAGCTTCCGTTCCATCCGATAACGATAGTGA 420
Query 430 AGAAGATGAGTCACAGGGGACTGAAAGGTGATGATCCGACGGATTGTTCCATGGCTTTTC 489
|||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||||||
Sbjct 421 AGAAGATGAGTCACAGGGGATTGAAAGGCGATGATCCGACGGATTGCTCAATGGCTTTTC 480
Query 490 TCTATCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTTTCTC 549
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTATCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTTTCTC 540
Query 550 CGCCGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCAACT 609
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACCGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCAACT 600
Query 610 GA-TCACTCCTTT-GAGGttttttttttttgtttttgttgagatttttg 656
|| |||||||||| || ||||||||||| |||| |||||| |||||||
Sbjct 601 GAATCACTCCTTTTGA--TTTTTTTTTTT-GTTTCTGTTGAAATTTTTG 646
> Ahg940109 jgi|Araly1|940109|scaffold_600653.1
Length=632
Score = 606 bits (328), Expect = 6e-173
Identities = 512/601 (85%), Gaps = 12/601 (2%)
Strand=Plus/Plus
Query 19 CAATGGCGACTACGATTCCACTCTTCGCCTCTTTCAAATACGCCGATAGCT-TAACGGTC 77
||||||| || |||| || |||||||| |||||||| ||||||||||| | | || |||
Sbjct 20 CAATGGCCACCGCGATACCTCTCTTCGCTTCTTTCAAGTACGCCGATAG-TCTCACCGTC 78
Query 78 GTAGGAATCTCCTTCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCTTAATCTAC 137
|| ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||
Sbjct 79 GTCGGAATCTCCTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCTAATCTAC 138
Query 138 CGTACCAGCTCATACAAATCCTTGAAATAC-TCCATTGACAAGGCCACGAAGAAACTCGA 196
|| || ||||| |||||||| ||||||| | ||||||||||||||| | ||||| || ||
Sbjct 139 CGCACGAGCTCTTACAAATCGTTGAAAT-CTTCCATTGACAAGGCCTCCAAGAAGCTGGA 197
Query 197 GACAATGAAGACAGAGAATCCATCGTCAAAGCTATCCATA-AAGAAATCAAAGACGAAGA 255
||| |||||||| || ||||| || || |||||| || | |||||||| ||||||||||
Sbjct 198 GACGATGAAGACTGATAATCCTTCCTCGAAGCTA-ACAAACAAGAAATCGAAGACGAAGA 256
Query 256 AGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTCTTCAAGT 315
|||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 257 AGATAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTGTCGCTCTTCAAGT 316
Query 316 TCAAATCCGGCGCCGTTGTGGCACTGGTTCTCTTCGTCGTCTTCGGATTGCTCAATTCAC 375
| ||||| || ||||||||||| |||||||||| || || || || ||| | ||||| |
Sbjct 317 TTAAATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTTGTGTTTGGGTTGTTGAATTCGC 376
Query 376 TATTCGAAGGTAAAGTCGTCGCGAAGCTTCC-TTTCCATCCGATCACGATAGTGAAGAAG 434
| |||||||| ||||| || ||||||||||| ||| |||||||| ||||| |||| ||||
Sbjct 377 TTTTCGAAGGGAAAGTTGTAGCGAAGCTTCCGTTT-CATCCGATTACGATTGTGAGGAAG 435
Query 435 ATGAGTCACAGGGGACTGAAAGGTGATGA-TCCGACGGATTGTTCCATGGCTTTTCTCTA 493
|||||||| || ||| ||||||| ||||| ||| || |||||||||||||||||||| ||
Sbjct 436 ATGAGTCATAGAGGATTGAAAGGAGATGATTCC-ACTGATTGTTCCATGGCTTTTCTTTA 494
Query 494 TCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTT-TCTCCGC 552
|||||| ||||| || ||||| || || ||||| ||||| ||| | |||||| ||||| |
Sbjct 495 TCTGCTTTGTTCTATCAGTATTAGGACTAATCTGCAGAAGTTT-TTGGGTTTCTCTCCAC 553
Query 553 CGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCAACTGAT 612
| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||
Sbjct 554 CTAGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCCGATCCAAAGACGAATTGAT 613
Query 613 C 613
|
Sbjct 614 C 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5