BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12040.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478556 jgi|Araly1|478556|fgenesh2_kg.3__1257__AT3G12040.1 1387 0.0
> Ahg478556 jgi|Araly1|478556|fgenesh2_kg.3__1257__AT3G12040.1
Length=867
Score = 1387 bits (751), Expect = 0.0
Identities = 832/871 (96%), Gaps = 5/871 (1%)
Strand=Plus/Plus
Query 16 TTTTGAAAAGTCAAATCTTTTCGTTTCGGGTT-GTATAATGAAAACGCCGGCTCGTCGAT 74
|||||| |||||||||||||| | |||||||| | | |||||||||||||||||||||||
Sbjct 1 TTTTGATAAGTCAAATCTTTTTGCTTCGGGTTCG-ACAATGAAAACGCCGGCTCGTCGAT 59
Query 75 CGAAGCGGGTTAATCAGGAGGAATCGGAGACAAATGTTACAACCCGAGTAGTCCTACGGA 134
|||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 CGAAGCGGATTGATC---AGGAATCGGAGACCAATGTTACAACCCGAGTAGTCCTACGGA 116
Query 135 CACGAAAGACCAACTGTTCCAAGACACGAGCGGCTCGGGTCAGACCCGATTACCCACTGA 194
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 117 CACGAAAGACCAACTGTTCCAAGACTCGAGCGGCTCGGGTCAGACCCGATTACCCACTGA 176
Query 195 CCCGCACCACCTCCGAGTCCGAGATGAAGTTAATGCCTCCGGAGTTCTTTCAGATCGACG 254
||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 177 CCCGCTCCACCTCCGAGTCCGAGATGAAGTTAATGCCTCTGGAGTTCTTTCAAATCGACG 236
Query 255 CACTTGATCTTGCGCCACGTTTGCTTGGCAAGTTCATGAGGAGAGACAATGTTGTGCTTC 314
| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
Sbjct 237 CGCTTGATCTTGCGCCACGTTTGCTTGGGAAGTTCCTAAGGAGAGACAATGTTGTGCTGC 296
Query 315 GAATTACAGAGGTAGAAGCTTATAGACCAAATGATTCAGCTTGCCATGGACGATTTGGTG 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAATTACAGAGGTAGAAGCTTATAGACCAAATGATTCAGCTTGCCATGGACGATTTGGTG 356
Query 375 TTACCCCACGGACCGCACCAGTTTTTGGACCAGGAGGACATGCTTATGTTTATCTATGTT 434
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 357 TTACCCCACGGACCGCACCAGTGTTTGGACCAGGAGGACATGCTTATGTTTATCTATGTT 416
Query 435 ATGGTCTTCATATGATGCTCAATATTGTTGCTGATAAAGAAGGAGTCGGAGCTGCTGTTT 494
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 417 ATGGTCTTCATATGATGCTCAATATTGTTGCTGATAAGGAAGGAGTTGGAGCCGCTGTTT 476
Query 495 TGATACGGTCTTGTTCTCCTGTTTCCGGAATGGAGACTATACAGGAGCGTCGTGGCCTGA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGATACGGTCTTGTTCTCCTGTTTCCGGAATGGAGACTATACAGGAGCGTCGTGGCCTGA 536
Query 555 AAACCGACAAACCTGTTCTTTTAAATGGACCAGGAAAGGTTGGTCAAGCGCTTGGACTCT 614
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAACCGACAAACCTGTTCTTCTAAATGGACCAGGAAAGGTTGGTCAAGCGCTTGGACTCT 596
Query 615 CAACAGAGTGGTCTCATCATCCACTTTATTCTCCTGGAGGACTGGAGCTTCTGGATGGAG 674
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 597 CAACAGAGTGGTCTCATCATCCACTTTATTCTCCTGGAGGACTGGAGCTTCTTGATGGAG 656
Query 675 GAGAAGATGTGGAGAAAGTAATGGTTGGTCCTCGCGTTGGGATAGATTACGCATTGCCTG 734
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 657 GAGAATATGTGGAGAAAGTAATGGTTGGCCCTCGCGTTGGGATAGATTACGCATTGCCTC 716
Query 735 AACATGTGAATGCCTTGTGGAGATTTGCTGTTGCAGACACTCCATGGATAAGTGCTCCTA 794
||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct 717 AACATGTCAATGCCTTGTGGAGATTTGCTATTGCAGAAACTCCATGGATAAGTGCTCCGA 776
Query 795 AGAACACTCTTAAACCTCTCTAACTTCAACTCAAAACTCCTTTGTACCTCTTCTTTGTAA 854
||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 777 AGAACACTCTTAAGCCTCTCTAACTTCAACTCAAAACTTCTTTTTTCCTCTTCTTTGTAA 836
Query 855 ATAGACATCTGCATGTCATATTAACTCTTTG 885
|||||||||||||||| ||||||||||||||
Sbjct 837 ATAGACATCTGCATGTAATATTAACTCTTTG 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5