BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12040.1 Length=1037 Score E Sequences producing significant alignments: (Bits) Value Ahg478556 jgi|Araly1|478556|fgenesh2_kg.3__1257__AT3G12040.1 1387 0.0 > Ahg478556 jgi|Araly1|478556|fgenesh2_kg.3__1257__AT3G12040.1 Length=867 Score = 1387 bits (751), Expect = 0.0 Identities = 832/871 (96%), Gaps = 5/871 (1%) Strand=Plus/Plus Query 16 TTTTGAAAAGTCAAATCTTTTCGTTTCGGGTT-GTATAATGAAAACGCCGGCTCGTCGAT 74 |||||| |||||||||||||| | |||||||| | | ||||||||||||||||||||||| Sbjct 1 TTTTGATAAGTCAAATCTTTTTGCTTCGGGTTCG-ACAATGAAAACGCCGGCTCGTCGAT 59 Query 75 CGAAGCGGGTTAATCAGGAGGAATCGGAGACAAATGTTACAACCCGAGTAGTCCTACGGA 134 |||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 60 CGAAGCGGATTGATC---AGGAATCGGAGACCAATGTTACAACCCGAGTAGTCCTACGGA 116 Query 135 CACGAAAGACCAACTGTTCCAAGACACGAGCGGCTCGGGTCAGACCCGATTACCCACTGA 194 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 117 CACGAAAGACCAACTGTTCCAAGACTCGAGCGGCTCGGGTCAGACCCGATTACCCACTGA 176 Query 195 CCCGCACCACCTCCGAGTCCGAGATGAAGTTAATGCCTCCGGAGTTCTTTCAGATCGACG 254 ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 177 CCCGCTCCACCTCCGAGTCCGAGATGAAGTTAATGCCTCTGGAGTTCTTTCAAATCGACG 236 Query 255 CACTTGATCTTGCGCCACGTTTGCTTGGCAAGTTCATGAGGAGAGACAATGTTGTGCTTC 314 | |||||||||||||||||||||||||| |||||| | |||||||||||||||||||| | Sbjct 237 CGCTTGATCTTGCGCCACGTTTGCTTGGGAAGTTCCTAAGGAGAGACAATGTTGTGCTGC 296 Query 315 GAATTACAGAGGTAGAAGCTTATAGACCAAATGATTCAGCTTGCCATGGACGATTTGGTG 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GAATTACAGAGGTAGAAGCTTATAGACCAAATGATTCAGCTTGCCATGGACGATTTGGTG 356 Query 375 TTACCCCACGGACCGCACCAGTTTTTGGACCAGGAGGACATGCTTATGTTTATCTATGTT 434 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 357 TTACCCCACGGACCGCACCAGTGTTTGGACCAGGAGGACATGCTTATGTTTATCTATGTT 416 Query 435 ATGGTCTTCATATGATGCTCAATATTGTTGCTGATAAAGAAGGAGTCGGAGCTGCTGTTT 494 ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct 417 ATGGTCTTCATATGATGCTCAATATTGTTGCTGATAAGGAAGGAGTTGGAGCCGCTGTTT 476 Query 495 TGATACGGTCTTGTTCTCCTGTTTCCGGAATGGAGACTATACAGGAGCGTCGTGGCCTGA 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TGATACGGTCTTGTTCTCCTGTTTCCGGAATGGAGACTATACAGGAGCGTCGTGGCCTGA 536 Query 555 AAACCGACAAACCTGTTCTTTTAAATGGACCAGGAAAGGTTGGTCAAGCGCTTGGACTCT 614 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 537 AAACCGACAAACCTGTTCTTCTAAATGGACCAGGAAAGGTTGGTCAAGCGCTTGGACTCT 596 Query 615 CAACAGAGTGGTCTCATCATCCACTTTATTCTCCTGGAGGACTGGAGCTTCTGGATGGAG 674 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 597 CAACAGAGTGGTCTCATCATCCACTTTATTCTCCTGGAGGACTGGAGCTTCTTGATGGAG 656 Query 675 GAGAAGATGTGGAGAAAGTAATGGTTGGTCCTCGCGTTGGGATAGATTACGCATTGCCTG 734 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 657 GAGAATATGTGGAGAAAGTAATGGTTGGCCCTCGCGTTGGGATAGATTACGCATTGCCTC 716 Query 735 AACATGTGAATGCCTTGTGGAGATTTGCTGTTGCAGACACTCCATGGATAAGTGCTCCTA 794 ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| | Sbjct 717 AACATGTCAATGCCTTGTGGAGATTTGCTATTGCAGAAACTCCATGGATAAGTGCTCCGA 776 Query 795 AGAACACTCTTAAACCTCTCTAACTTCAACTCAAAACTCCTTTGTACCTCTTCTTTGTAA 854 ||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||| Sbjct 777 AGAACACTCTTAAGCCTCTCTAACTTCAACTCAAAACTTCTTTTTTCCTCTTCTTTGTAA 836 Query 855 ATAGACATCTGCATGTCATATTAACTCTTTG 885 |||||||||||||||| |||||||||||||| Sbjct 837 ATAGACATCTGCATGTAATATTAACTCTTTG 867 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38580392004 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5