BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12050.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478557 jgi|Araly1|478557|fgenesh2_kg.3__1258__AT3G12050.1 2080 0.0
> Ahg478557 jgi|Araly1|478557|fgenesh2_kg.3__1258__AT3G12050.1
Length=1351
Score = 2080 bits (1126), Expect = 0.0
Identities = 1225/1272 (96%), Gaps = 9/1272 (1%)
Strand=Plus/Plus
Query 148 TCTC-TCTCAATCCGTGTAGCTTAGCTTCCCTAAT-C--CAACCATGGCAAAGTTCGGTG 203
|||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||| |
Sbjct 84 TCTCTTCTCAATCCGTATAGCTTAGCTTCCCTAATCCAACAACCATGGCAAAGTTCGGCG 143
Query 204 AAGGTGACAAGAGATGGATCGTAGAAGACAGACCTGACGGCACCAACGTCCATAACTGGC 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AAGGTGACAAGAGATGGATCGTAGAAGACAGACCTGACGGCACCAACGTCCATAACTGGC 203
Query 264 ACTGGTCCGAAACCAATTGCCTTGAATGGTCTCGCAACTTCTTCACCAAACAATTCTCCG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 ACTGGTCCGAAACCAATTGCCTTGAATGGTCTCGCAACTTCTTCACCAAACAATTCTCCG 263
Query 324 GCGTTGATATCCTCTCCGGCGAAGGTAATCTTTTCATCAAGGTCAGTAAGATCGAGAAAG 383
|||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 264 GCGTTGTTATCCTCTCCGGCGAAGGTAATCTATTCATCAAGGTCAATAAGATCGAGAAAG 323
Query 384 TCGAAGGCGAGGCTTATGTGAATGTGA-GGAAGGGGAAGATTATCCCTGGCTACGAGCTT 442
||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 324 TCGAAGGCGAGGCTTATGTGAATGT-ACGGAAGGGGAAGATTATCCCTGGGTACGAGCTT 382
Query 443 AACGTCTCTTTATCTTGGGAAGGTGAGGCTAAAGATTCCGATGGGAAGACGCTTTTGAAA 502
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 383 AATGTCTCTTTATCCTGGGAAGGTGAGGCCAAAGATTCCGATGGGAAGACGCTGTTGAAA 442
Query 503 GCTGATGGATTGGTCGATATGCCTTATATCTCCGATGAGAATGCTGATGAAGATCCGGAG 562
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GCTGATGGATTGGTGGATATGCCTTATATCTCCGATGAGAATGCTGATGAAGATCCGGAG 502
Query 563 ATTAGGTTTTCGGTGAAGGATGAGGGACCGATTGGGAGGACTTTGAAGGAAGCGATGGTG 622
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 503 ATTAGGTTTTCGGTGAAGGATGAGGGACCGATTGGGAGGACTTTGAAGGAGGCGATGGTG 562
Query 623 AAGAAGGGGAAGGAGATTATTCTGGAGAAGGTTAGGGTTTATGTGGAGGCTATGGCGAGA 682
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 563 AAGAAGGGGAAATCGATTATTCTGGAGAAGGTTAGGGTTTATGTGGAGGCTATGGCGAAA 622
Query 683 GGAGGCCCGTGTAGGGATGAATTGGAATCGAAGAAGGTTGCGCCGAAATCGGTAGCGGCT 742
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 623 GGAGGTCCGTGTAGGGATGAATTGGAGTCGAAGAAGGTTGCGCCGAAATCTGTAGCGGCT 682
Query 743 GGATCAGCTACGGTGGCGGTGGAGAAGTCTGGTGCTGCCCCGGTGGTGTCTGCTGCTGCG 802
||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 683 GGATCAGCTACTGTGGCAGTGGAGAAGTCTGGTGGTGCCCCGGCGGTGTCTGCTGCTGCG 742
Query 803 GTGGAGAGTAAGGTAGTTAAGGAGAAGAAGAAGGCGAAGACTAAGGAAGGGTTTAAGACA 862
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GTGGAGACTAAGGTAGTGAAGGAGAAGAAGAAGGCGAAGACTAAGGAAGGGTTTAAGACA 802
Query 863 ATTACTATGACCGAGAAGTTTAATTGCAGAGCTAGGGATTTGTATGAGATTTTAATGGAT 922
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 ATTACTATGACTGAGAAGTTTAATTGCAGAGCTAGGGATTTGTATGAGATTTTAATGGAT 862
Query 923 GAGAATCGTTGGAAAGGTTTTACGCAGAGTAATGCTAAGATTAGTAAAGATGTGAATGGT 982
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 863 GAGAATCGTTGGAAAGGTTTTACGCAGAGCAATGCTAAGATTAGTAAAGATGTGAATGGT 922
Query 983 CCGATTAGTGTCTTTGATGGGTCTGTTACTGGAATGAATCTTGAGCTTGAAGAAGGCAAA 1042
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 923 CCGATTAGTGTTTTTGATGGGTCTGTTACTGGAATGAATCTTGAGCTTGAAGAAGGAAAA 982
Query 1043 TTGATTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGGTGAAG 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TTGATTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGGTGAAG 1042
Query 1103 ATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTT 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 ATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTT 1102
Query 1163 CCTGAAGAGGACAGATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGA 1222
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1103 CCTGAAGAGGACAGATATGGGAATGCGACTGTGGTGGAGAACACTGAGAGAGGATGGAGA 1162
Query 1223 GATCTTATATTCCATAGGATCCGTGCAGTTTTCGGATTTGGAATATGAACTTATGATTTT 1282
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1163 GATCTTATATTCCATAGGATCCGTGCAGTTTTCGGATTTGGAATATGAT-TTATGATTTT 1221
Query 1283 GATTATCAAATAAGTTGATTATGATTTGGACCGATAACCAATGCAAAATGTATGATTTTA 1342
|||||||||||||||| ||||||||||||||| | || |||||||||||||||||||| |
Sbjct 1222 GATTATCAAATAAGTTAATTATGATTTGGACCAAGAAACAATGCAAAATGTATGATTTGA 1281
Query 1343 AAGTTTTTCAGTTTTAGTTAATGCATTTCCCTTGAACTTATATATAATCTCTTTCTTTAG 1402
|||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1282 AAGTTTTTCACTTTTAGTTAATGCATTTCCCTTGAACTTATATA-A-TCTCTTTCTTTAG 1339
Query 1403 GCCATAGGCCCT 1414
||||||||||||
Sbjct 1340 GCCATAGGCCCT 1351
Score = 86.1 bits (46), Expect = 7e-16
Identities = 55/59 (93%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 12 aaaaaaaaaaaaaaaaaGTTTCTAGAGGCTTCGTTAGCCTAATTCATTAA-CTAGGTTC 69
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAAAAAGAAAAAAAACTGTTTCTAGAGGCTTCGTTAGCCTAATTCATTAATCTAGGTTC 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5