BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12060.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904095 jgi|Araly1|904095|Al_scaffold_0003_1223 2645 0.0
> Ahg904095 jgi|Araly1|904095|Al_scaffold_0003_1223
Length=1680
Score = 2645 bits (1432), Expect = 0.0
Identities = 1603/1684 (95%), Gaps = 17/1684 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTTGGACTCCGTTAAGCATTTGCCTATTCACGGCGTCTCCGCCTTCTCCTCCGTC 60
||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGGACACCGTTAAGCATATGCCTATTCACGGCGTCTCCGCCTTCTCCTCCGTC 60
Query 61 ACCGTCGAAATCAAAAGCTTTTTCTCCACCGTGAAACCAAGAAAAACTTCAACTTTCGTC 120
|||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 61 ACCGTCGAAATCAAAAACTTTTTCTCCGCCGTGAAACCAAGAAAAACCTCAACTTTCGTC 120
Query 121 TACGCTTTCGTAGTAACTTTCGTTGCCTTGACTGTTTTCTTAGCCTTTAGTCCTTCTCCC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACGCTTTCGTCGTAACTTTCGTTGCCTTGACTGTTTTCTTAGCCTTTAGTCCTTCTCCC 180
Query 181 ATCACAGTCGCACTCGCTCCTTCCATTTCTTCCTATGTTCTCCCTAATATCACTGTCTCG 240
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 ATCACAGTCGCAATCGCTCCTTCCATTTCTTCCTATATTCTCCCTAATATCACTGTCTCC 240
Query 241 AATTCATCC-AACTCTTCACCGTCGAGTCTCGATTCTAATTTCACCACATTG-CGTACAC 298
|||||| || |||||| || |||||| |||||||| ||||||||||||||| || ||||
Sbjct 241 AATTCA-CCTAACTCTCCAGCGTCGACCCTCGATTCCAATTTCACCACATTGCCG-ACAC 298
Query 299 CGGCGCCGGAAAATCTCACTGCAGTTACTAAAAACTTAACCTTTGAGTCCCCCGTCGCAA 358
||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||
Sbjct 299 CGGCGCCGGAAAATCTCACGGCAGTTACTAAAAACGTAACCTTTGAGTCCCCCATCGCAA 358
Query 359 ATGGGACAACGGACACAAATGCTA-AAACCATCACTATTCAGTTCCAGACCGGTCATGCA 417
|||||||||| ||| | | ||||| | | || |||| |||||||| |||||| |||||||
Sbjct 359 ATGGGACAACAGACCCGACTGCTACAGA-CAACACTTTTCAGTTCAAGACCGATCATGCA 417
Query 418 AAGGAAAACATATCGTGTCCTGACAAC-A-A---A----ACTGCTCGAGATTTGGACACA 468
||||||||||||||||||||||||||| | | | ||||||||||||||||||| |
Sbjct 418 AAGGAAAACATATCGTGTCCTGACAACAAGACTGATGTTACTGCTCGAGATTTGGACAAA 477
Query 469 CATGGAGCAAGGAAAGCACCTCTGTCGGAAGTTCTAGCTGTCAATTCGACTGCTTCTCCG 528
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |
Sbjct 478 CATGGAGCAAGGAAAGCACCTCTGTCGGAGGTTCTAGCCGTCAATTCCTCTGCTTCTCAG 537
Query 529 AAGCGAAAACAGAGAAGGAAGTCGTCGCTGAGAAAGGTGATCGAGTCTCTGAAGAGTTGT 588
| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 ATGAGAAAACAGAGAAGGAAGTCGTCGCTGAGAAAAGTGATCGAGTCTCTGAAGAGTTGC 597
Query 589 GAGTTTTTCGAGGGAGATTGGGTCAAAGACGATTCGTATCCGCTCTACAAACCCGGTTCG 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 GAGTTTTTCGAGGGAGATTGGGTCAAAGACGATTCGTATCCGCTCTACAAACCCGGGTCG 657
Query 649 TGTAATCTGATCGATGAACAGTTTAATTGTATCTCAAACGGAAGACCTGACGTGGATTTC 708
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 TGTAATCTGATCGATGAACAGTTTAATTGTATCTCTAACGGAAGACCTGACGTGGATTTC 717
Query 709 CAGAAATTGAAATGGAAACCAAAGCAATGTTCTTTACCAAGGTTAAATGGAGGTAAATTG 768
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 718 CAGAAATTGAAATGGAAACCAAAGAAATGCTCTTTACCAAGGTTAAATGGAGGTAAATTG 777
Query 769 CTTGAGATGATTAGAGGAAGAAGGCTAGTGTTTGTTGGAGATTCGCTGAATAGAAACATG 828
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTGGAGATGATTAGAGGAAAAAGGCTAGTGTTTGTTGGAGATTCGCTGAATAGAAACATG 837
Query 829 TGGGAGTCTTTGGTTTGCATTCTTAAAGGATCAGTGAAAGACGAGAGTCAAGTCTTTGAG 888
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 TGGGAGTCTTTGGTTTGCATTCTTAAAGGATCAGTGAAAGATGAGAGTCAAGTCTTTGAG 897
Query 889 GCTCATGGAAGGCATCAATTCCGTTGGGAGGCTGAGTACT-CTTTCGTCTTTAAAGATTA 947
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 898 GCTCATGGAAGGCATCAATTCCGTTGGGAGGCTGAGTACTCCTTT-GTCTTCAAAGATTA 956
Query 948 TAATTGCACTGTGGAGTTCTTTGCATCGCCTTTCTTGGTTCAAGAATGGGAAGTTACAGA 1007
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 957 TAATTGCACTGTGGAGTTCTTTGCATTGCCTTTCTTGGTTCAAGAATGGGAAGTTACAGA 1016
Query 1008 GAAGAACGGGACGAAGAAGGAGACTTTGCGGTTAGATTTGGTCGGGAAGTCATCGGAGCA 1067
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GAATAACGGGACGAAGAAGGAGACTTTGCGGTTAGATTTGGTCGGGAAGTCATCGGAGCA 1076
Query 1068 GTACAAAGGAGCGGATATTCTTGTATTCAATACCGGACATTGGTGGACTCATGAGAAAAC 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTACAAAGGAGCGGATATTCTTGTATTCAATACCGGACATTGGTGGACTCATGAGAAAAC 1136
Query 1128 TTCCAAAGGGGAGGATTATTATCAAGAAGGGAGCACTGTTCACCCGAAACTCGATGTGGA 1187
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1137 TTCCAAAGGGGAGGATTATTATCAAGAAGGGAGCAATGTTCACCCGAAACTCGATGTGGA 1196
Query 1188 TGAAGCTTTCCGAAAAGCATTGACAACTTGGGGTCGATGGGTTGATAAGAATGTGAATCC 1247
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1197 TGAAGCTTTTCGAAAAGCATTGACGACTTGGGGTCGATGGGTTGATAAGAATGTGAATCC 1256
Query 1248 AAAGAAGTCCCTTGTTTTCTTCCGTGGTTATTCCCCGTCACATTTCAGCGGCGGGCAATG 1307
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAAGAAATCCCTTGTTTTTTTCCGTGGTTATTCCCCGTCACATTTCAGCGGCGGGCAATG 1316
Query 1308 GAATGCGGGAGGAGCATGCGATGATGAAACAGAACCGATCAAGAACGAGACTTACCTAAC 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAATGCGGGAGGAGCATGCGATGATGAAACAGAACCGATCAAGAACGAGACTTACCTAAC 1376
Query 1368 TCCTTACATGTTGAAGATGGAGATACTTGAAAGAGTTCTCAGGGGAATGAAAACACCAGT 1427
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1377 TCCTTACATGTTGAAGATGGAGATACTTGAAAGAGTTCTCAGTGGAATGAAAACGCCTGT 1436
Query 1428 CACGTATCTCAACATCACGAGGTTAACTGATTACAGGAAGGACGCTCACCCATCGATATA 1487
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1437 CACGTATCTCAACATCACGAGGTTAACTGATTACAGGAAGGACGCTCATCCGTCGATATA 1496
Query 1488 CCGGAAACAAAAACTATCCGCAGAAGAAAGTAAATCACCATTGTTGTACCAAGACTGTAG 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CCGGAAACAAAAACTATCCGCAGAAGAAAGTAAATCACCATTGTTGTACCAAGACTGTAG 1556
Query 1548 CCACTGGTGTCTCCCTGGGGTGCCTGATTCTTGGAACGAAATTTTCTATGCCGAGTTACT 1607
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1557 CCACTGGTGCCTCCCTGGGGTGCCTGATTCTTGGAACGAAATTCTCTATGCCGAGATACT 1616
Query 1608 TGTAAAGCTTGACCAGCTTGGTGGCAAAAGACGGCGGAAAGCCCTAAAAGATCATAGGAG 1667
||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1617 CGTAAAACTTGACCAGCTTGGTGGCAGAAGACGGCGGAAACCCCTAAAAGATCATAGGAG 1676
Query 1668 TTGA 1671
||||
Sbjct 1677 TTGA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5