BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12070.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317988 jgi|Araly1|317988|fgenesh1_pm.C_scaffold_3001004 1184 0.0
Ahg488063 jgi|Araly1|488063|fgenesh2_kg.6__1197__AT5G12210.1 1123 0.0
> Ahg317988 jgi|Araly1|317988|fgenesh1_pm.C_scaffold_3001004
Length=909
Score = 1184 bits (641), Expect = 0.0
Identities = 709/742 (96%), Gaps = 4/742 (1%)
Strand=Plus/Plus
Query 349 GTGGCTTTGCCGGTAATACTGGCCATGATCCGCATGTTTTGTATACACTCAGTGCTGTAC 408
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 170 GTGGCTTTGCCGGTAATACTGGACATGATCCGCATGTTATATATACACTCAGTGCTGTAC 229
Query 409 AAATCTTGGCCCTCTTCGACAAACTCAA-CATTCTTGATGTTGAAAAAGTTTCAAATTAT 467
|||||||||||||||| |||||||| || |||||||||||| ||||||| |||| ||||
Sbjct 230 AAATCTTGGCCCTCTTTGACAAACT-AAGCATTCTTGATGTCCAAAAAGTGTCAAGTTAT 288
Query 468 ATTGCTGGGTTACAGAATGAAGATGGATCCTTCTCAGGAGATATATGGGGCGAAGTAGAT 527
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 289 ATTGCTGGGTTACAGAATAAAGATGGATCCTTCTCAGGAGATATGTGGGGCGAAGTAGAT 348
Query 528 ACAAGGTTTTCTTACATAGCTATATGCTGCCTCTCAATATTAAAATGTCTTGATAAAATC 587
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 349 ACAAGGTTTTCGTACATAGCTATATGCTGTCTCTCAATATTAAAATGTCTTGATAAGATC 408
Query 588 AATGTGAAGAAGGCTGTTGATTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTTGGG 647
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 409 AATGTGGAGAAGGCTGTTGATTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTCGGG 468
Query 648 TGCTCACCTGGAGCGGAGTCTCATGCAGGACAGATTTTCTGTTGTGTGGGTGCTCTTGCT 707
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 469 TGCACACCTGGAGCGGAGTCTCATGCAGGACAGATTTTCTGTTGCGTGGGTGCTCTTGCT 528
Query 708 ATCACCGGGAATCTCCATCGTGTTGATAAGGACTTACTTGGATGGTGGTTATGTGAAAGA 767
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATCACCGGGAATCTCCATCATGTTGATAAGGACTTACTTGGATGGTGGTTATGTGAAAGA 588
Query 768 CAAGACTACGAGTCTGGAGGTTTAAATGGACGACCTGAGAAACTCCCTGATGTTTGCTAT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CAAGACTACGAGTCTGGAGGTTTAAATGGACGACCTGAGAAACTCCCTGATGTTTGCTAT 648
Query 828 TCTTGGTGGGTCTTATCCAGCTTAATCATGATCGATAGAGTTCACTGGATCGAGAAAGCA 887
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 649 TCTTGGTGGGTGTTATCCAGCTTAATCATGATCGATAGAGTTCATTGGATCGAGAAAGGA 708
Query 888 AAGCTTGTCAAGTTTATCTTGGACTCTCAGGACATGGATAACGGAGGCATCTCAGATAGA 947
|||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 709 AAGCTTGTCAAGTTCATCTTGGACTGTCAGGACATGGATAACGGAGGTATCTCAGATA-A 767
Query 948 -CCCAGCTATACTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTCTCTCTTCT 1006
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TCCCAAAGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTCTCTCTTCT 827
Query 1007 CGAGTATCCTGGAGTCAAAACAATTGATCCTGCCTACGCTTTGCCTGTCCATGTCATCAA 1066
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CGAGTATCCTGGAGTCAAACCAATTGATCCTGCCTACGCTTTGCCTGTCCATGTCATCAA 887
Query 1067 CCGGATTCTCTTCACCAAATGA 1088
||||||||||||||||||||||
Sbjct 888 CCGGATTCTCTTCACCAAATGA 909
Score = 231 bits (125), Expect = 7e-60
Identities = 154/167 (92%), Gaps = 6/167 (4%)
Strand=Plus/Plus
Query 135 ATGGCAGACAAGCTCGTAGCTGGCAAGCATCTTCGTTACATTCTGAATTTGATGGCAGAA 194
|||||||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct 1 ATGGCAGACAAGCTCGTAGCTGACAAGCATGTTCGTTACATTC------TGATGGCAGAA 54
Query 195 AAGAAAAAAGAGAGTTTTGAGTCTGTGGTTATGGATCATCTGAGAATGAATGGTGCATAT 254
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 55 AAGAAAAAAGAGAGTTTTGAGTCTGTTGTGATGGATCACCTGAGAATGAATGGTGCATAT 114
Query 255 TGGGGACTAACCACACTGGCTTTACTCGACAAGCTTGGTTCTGTTTC 301
||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 115 TGGGGACTAACCACACTAGATTTACTCGACAAGCTTGGTTCTGTTTC 161
> Ahg488063 jgi|Araly1|488063|fgenesh2_kg.6__1197__AT5G12210.1
Length=1287
Score = 1123 bits (608), Expect = 0.0
Identities = 837/948 (88%), Gaps = 13/948 (1%)
Strand=Plus/Plus
Query 145 AGCTCGTAGCTGGCAAGCATCTTCGTTACATTCTGAATTTGATGGCAGAAAAGAAAAAAG 204
|||| ||||||| ||||||| | |||||||||| |||||||||||||||| ||||
Sbjct 136 AGCTTGTAGCTGACAAGCATGTACGTTACATTC------TGATGGCAGAAAAGAAGAAAG 189
Query 205 AGAGTTTTGAGTCTGTGGTTATGGATCATCTGAGAATGAATGGTGCATATTGGGGACTAA 264
||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |
Sbjct 190 AGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCTTACTGGGGACTCA 249
Query 265 CCACACT-GGCTTTACTCGACAAGCTTGGTTCTGTTTCCGAAGATGAAGTTGTGTCATGG 323
|||| || | | |||||||||||||| || | |||||| ||||||||||| || ||||||
Sbjct 250 CCACTCTCGAC-TTACTCGACAAGCTGGGCTGTGTTTCTGAAGATGAAGTCGTTTCATGG 308
Query 324 GTCATGACCTGCCAGCATGAGTCTGGTGGCTTTGCCGGTAATACTGGCCATGATCCGCAT 383
||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct 309 CTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAATACTGGACACGATCCACAT 368
Query 384 GTTTTGTATACACTCAGTGCTGTACAAATCTTGGCCCTCTTCGACAAACTCAACATTCTT 443
|| | |||||||||||||| |||||||||||||||||||| |||||| | |||||||||
Sbjct 369 ATTCTATATACACTCAGTGCCGTACAAATCTTGGCCCTCTTTGACAAAATTAACATTCTT 428
Query 444 GATGTTGAAAAAGTTTCAAATTATATTGCTGGGTTACAGAATGAAGATGGATCCTTCTCA 503
|| ||| ||||| ||| |||| ||||| ||| ||||| ||||||||||||||||||
Sbjct 429 GACATTGGGAAAGTATCAGGTTATGTTGCTAAGTTGCAGAACGAAGATGGATCCTTCTCA 488
Query 504 GGAGATATATGGGGCGAAGTAGATACAAGGTTTTCTTACATAGCTATATGCTGCCTCTCA 563
|||||||| ||||| ||| ||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 489 GGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCTGTCTCTCA 548
Query 564 ATATTAAAATGTCTTGATAAAATCAATGTGAAGAAGGCTGTTGATTACATTGTGAGCTGC 623
||||| ||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 549 ATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCAGTTGAGTACATTGTGAGCTGC 608
Query 624 AAAAACCTGGATGGTGGTTTTGGGTGCTCACCTGGAGCGGAGTCTCATGCAGGACAGATT 683
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 609 AAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAGGACAGATT 668
Query 684 TTCTGTTGTGTGGGTGCTCTTGCTATCACCGGGAATCTCCATCGTGTTGATAAGGACTTA 743
||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 669 TTCTGCTGTGTGGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATAAGGACTTA 728
Query 744 CTTGGATGGTGGTTATGTGAAAGACAAGACTACGAGTCTGGAGGTTTAAATGGACGACCT 803
||||| |||||||||||||||||||||| || || ||| || |||||||||||||||
Sbjct 729 CTTGGTTGGTGGTTATGTGAAAGACAAG--TAA-AGGGTGGGGGCTTAAATGGACGACCT 785
Query 804 GAGAAACTCCCTGATGTTTGCTATTCTTGGTGGGTCTTATCCAGCTTAATCATGATCGAT 863
||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||| |||
Sbjct 786 GAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGATAGAT 845
Query 864 AGAGTTCACTGGATCGAGAAAGCAAAGCTTGTCAAGTTTATCTTGGACTCTCAGGACATG 923
||||||||||||||||| |||||||||||||||||||| || ||||||| |||||| ||
Sbjct 846 AGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTTTGGACTGTCAGGATTTG 905
Query 924 GATAACGGAGGCATCTCAGATAGACCC-AGCTATACTGTTGATATCTTCCACACCTACTT 982
|| ||||||||||||||||| |||| | | || |||||||||||||||||||||||||
Sbjct 906 GAAAACGGAGGCATCTCAGACCGACCTGA-CGATGCTGTTGATATCTTCCACACCTACTT 964
Query 983 TGGAGTTGCGGGGCTCTCTCTTCTCGAGTATCCTGGAGTCAAAACAATTGATCCTGCCTA 1042
||||||||||||||| || || || |||||||||||||||||| ||||||||| |||||
Sbjct 965 TGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCGGCCTA 1024
Query 1043 CGCTTTGCCTGTCCATGTCATCAACCGGATTCTCTTCACCAAATGATT 1090
||||||||||| ||||| ||||||||||| | ||||||||||||||
Sbjct 1025 TGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGATT 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5