BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12080.1
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478562 jgi|Araly1|478562|fgenesh2_kg.3__1263__AT3G12080.1 3435 0.0
> Ahg478562 jgi|Araly1|478562|fgenesh2_kg.3__1263__AT3G12080.1
Length=2056
Score = 3435 bits (1860), Expect = 0.0
Identities = 1994/2059 (97%), Gaps = 7/2059 (0%)
Strand=Plus/Plus
Query 49 CTCTGCCAAAAATGGCGAGTCTACTCGATTCGTTGACAACCAGAGGGTTCTTCACCATGC 108
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 1 CTCTGCCAAAAATGGCGAGTCTACTTGATTCGTTGACAACCAGAGGCTTCTTCACCATTC 60
Query 109 CCTCAATTTCTAGGATTTATTCTCCTCTAGCTTCTTCAACTTCATTGACTTCTTCACCAT 168
| |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 CTTCAATTTCTAGGATTTCTTCTCCTTTAGCTTCTTCATCTTCATTGACTTCTTCACCAT 120
Query 169 CTTCCTCTTCTTCGATTATCCCATCCTTGTCAGTTCTCTCTTACACTCACCAACACCCGC 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CTTCCTCTTCTTCGATTATCCCATCCTTGTCAGTTCTCTCTTACACTCACCAACACTCGC 180
Query 229 ATTCCTCTCGCTTCCCTTTCCTTGTTGCAGCAACTCTGGATGGTTCCTCTGCTGAGGAAG 288
| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 A-T--TCTCGCTTCCCTTTCCTTGTTGCAGCAACTCTGGATGGTTCCTCTGCTGAAGAAG 237
Query 289 AGCTAGATTTCGAGGAATTCGACCAATATGCTGAAGATAACTTCGCAGATGATTATTCGG 348
||||||||||||| ||||||||||||||||||||||| |||| ||| |||| |||| |
Sbjct 238 AGCTAGATTTCGAAGAATTCGACCAATATGCTGAAGACAACTACGC---TGATGATTCCG 294
Query 349 ATGACGAAGACGACTCCATCGATATCTCCGTTCTTGAGAAAGAAGCGAGAGATATCGTGA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATGACGAAGACGACTCCATCGATATCTCCGTTCTTGAGAAAGAAGCGAGAGATATCGTGA 354
Query 409 GAGATTATGCTACCACTCTGTCTCGCGAGCTCAAAATCGAGGATGAGACCATTGAGGGGA 468
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 355 GAGATTATGCTACCACTTTGTCTCGCGAGCTCAAACTCGAGGATGAGACCATTGAGGGGA 414
Query 469 AGGAAACTCGTAGAAAAGGGAAAAGGCTAGCCAAAAATACACAGCAGATACCAGAGCATC 528
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 415 AGGAAACTCGTAGAAAAGGGAAAAGGCTAGCCAAAAATACGCAGCAGATACCAGAGCATC 474
Query 529 TTCTCCAAAGAGTTGCTATAGTTGGAAGGCCTAATGTCGGAAAATCAGCATTGTTCAACC 588
|||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||
Sbjct 475 TTCTCCAAAGAGTTGCGATAGTTGGAAGGCCCAATGTTGGCAAATCAGCATTGTTCAACC 534
Query 589 GCCTTGTTGGGGAGAATAGAGCTATTGTAGTGGATGAACCTGGAGTTACTAGGGATCGAT 648
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTCTTGTTGGGGAGAATAGAGCTATTGTAGTGGATGAACCTGGAGTTACTAGGGATCGAT 594
Query 649 TGTATGGTAGATCATATTGGGGTGATCAAGAGTTTGTGGTGGTAGACACCGGAGGAGTTA 708
|||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 595 TGTACGGTAGATCGTATTGGGGTGATCAAGAATTTGTGGTGGTAGACACAGGAGGTGTTA 654
Query 709 TGACTGTTTCAAAGTCACCATCTGGTGTCATGGAAGAGCTGAATGTGTCAACCACCATTG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGACTGTTTCAAAGTCACCATCTGGTGTCATGGAAGAGCTGAATGTGTCAACCACCATTG 714
Query 769 GCATGGAAGGTATTCCACTAAGCTCTAGGGAAGCAGCTATTGCAAGGATGCCTTCCATGA 828
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GGATGGAAGGTATTCCACTAAGCTCTAGGGAAGCAGCTATTGCAAGGATGCCTTCCATGA 774
Query 829 TTGAGAAACAAGCTACAGCAGCTGTCGACGAATCAGCTGTTATTATTTTCGTTGTCGATG 888
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTGAGAAACAAGCGACAGCAGCTGTCGACGAATCAGCTGTTATTATTTTCGTTGTCGATG 834
Query 889 GCCAGGCAGGGCCATCAGGTGCTGATGTGGAAATTGCAGACTGGTTGCGGAAGTACTACT 948
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 835 GCCAGGCAGGGCCATCAGGTGCTGATGTGGAAATTGCGGACTGGTTGCGGAAGTACTACT 894
Query 949 CACATAAGTATATCATTCTCGCGGTGAACAAGTGTGAATCGCCACGTAAAGGACTCATGC 1008
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 895 CACATAAGTATATCATTCTCGCGGTAAACAAATGTGAATCACCACGTAAAGGACTCATGC 954
Query 1009 AGGCTTCGGAATTTTGGTCTCTAGGGTTCACACCTATCCCTATCTCTGCATTGTCGGGAA 1068
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 955 AGGCTTCGGAATTTTGGTCTCTAGGGTTCACACCTATCCCTATTTCTGCATTGTCGGGAA 1014
Query 1069 CTGGAACAGGAGAGCTGCTTGATCTTGTTTGTTCTGGCCTAATTAAACTCGAGATCATGG 1128
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1015 CTGGAACAGGAGAGCTGCTTGATCTTGTTTGTTCTGGGCTAAATAAACTCGAGATCATGG 1074
Query 1129 AGAACATTGAAGAGGAGGAAGAAGAAAACTACATTCCTGCCATTGCAATTATTGGTCGGC 1188
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AGAACATCGAAGAGGAGGAAGAAGAAAACTACATTCCTGCCATTGCAATTATTGGTCGGC 1134
Query 1189 CAAATGTTGGCAAAAGTAGCATTTTAAATGCACTTGTCCGAGAGGATAGAACAATTGTTA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1135 CAAATGTTGGCAAAAGTAGCATTTTAAATGCACTTGTCCGAGAGGATAGAACAATAGTTA 1194
Query 1249 GCCCTGTTAGTGGCACTACCCGTGATGCTATAGATGCAGAATTTACCGGACCAGATGGGG 1308
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GCCCTGTTAGTGGAACTACCCGTGATGCTATAGATGCAGAATTTACCGGACCAGATGGGG 1254
Query 1309 AGAAGTTTCGGCTTATAGATACAGCTGGGATCAGGAAAAAGTCATCTGTGGCTTCATCAG 1368
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1255 AGAAGTTTCGGCTTATAGATACAGCCGGGATCAGGAAAAAGTCATCTGTGGCTTCATCAG 1314
Query 1369 GCAGCACTACAGAGGCCATGTCAGTGAATCGTGCATTTCGAGCAATTCGTCGTTCTGATG 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GCAGCACTACAGAGGCCATGTCAGTGAATCGTGCATTTCGAGCAATTCGTCGTTCTGATG 1374
Query 1429 TTGTTGCCCTTGTCATTGAAGCTATGGCATGCATAACAGAGCAGGATCTGAAGATTGCAG 1488
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1375 TTGTTGCCCTTGTCATTGAAGCCATGGCATGCATAACAGAGCAGGATCTGAAGATTGCAG 1434
Query 1489 AAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTTGTTGTAAACAAATGGGATACAATAC 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTTGTTGTAAACAAATGGGATACAATAC 1494
Query 1549 CGAACAAAAACCAAGAGACTGCAGCACATTACGAGGACGATGTTCGGGAGAAGCTCCGTT 1608
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CAAACAAAAACCAAGAGACTGCAGCACATTACGAGGACGATGTTCGGGAGAAGCTCCGTT 1554
Query 1609 CCCTCAAATGGGCACCTATTGTTTATTCAACCGCAATAACTGGCCATAGCGTTGACAATA 1668
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1555 CCCTCAAATGGGCACCTATTGTTTATTCTACTGCAATAACTGGCCATAGTGTTGACAATA 1614
Query 1669 TTGTGGTTGCTGCTGCTACGGTTCAAAAGGAGAGATCAAGAAGACTTAGTACGGCTATAT 1728
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1615 TTGTGGTTGCTGCTGCGACGGTTCAAAAGGAGAGATCAAGAAGACTTAGTACAGCCATAT 1674
Query 1729 TGAACCAAGTGATAAGAGAAGCAGTTGCATTTAAATCCCCTCCAAGGACCCGTGGAGGCA 1788
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1675 TGAACCAAGTGATAAGAGAAGCAGTTGCATTTAAATCCCCTCCAAGAACCCGTGGAGGCA 1734
Query 1789 AGCGAGGTCGCGTTTACTATTGCACCCAGGCAGCAATAAGGCCACCGACGTTTGTTTTCT 1848
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AGCGAGGCCGCGTTTACTATTGCACCCAGGCAGCAATAAGGCCACCGACGTTTGTTTTCT 1794
Query 1849 TTGTAAACGACGCAAAGCTGTTTTCGGATACGTACAGAAGGTATATGGAGAAACAGCTAC 1908
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1795 TTGTAAACGACGCAAAGCTGTTTTCGGATACGTACAGAAGGTATATGGAGAAGCAGCTAC 1854
Query 1909 GCACTGATGCAGGCTTTGCTGGGACTCCAATTCGGCTTCTTTGGCGTAGCCGTAAAAGAT 1968
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1855 GCACTGATGCAGGCTTTGCTGGGACTCCAATTCGGCTTCTTTGGCGCAGTCGTAAACGAT 1914
Query 1969 CTGACAAAAATGGAGGAGGTGGAGGAACAATGAGAATGGCAGGCCTTACACGTCAGAGAA 2028
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1915 CTGACAAAAATGGAGGAGGTGGAGGAACAATGAGAATGGCAGGTCTTACACGCCAGAGAA 1974
Query 2029 ATCTTGCAACCAAAAGAACATAATAACCGACGATGTAATTTT-GTTGTATTGAAAAATAA 2087
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1975 ATCTTGCAACCAAAAGAACATAATAACGGACGATGTAATTTTTGTTGTATTGAAAAATAA 2034
Query 2088 TTACTATCAATATATATAT 2106
|||||||||| ||||||||
Sbjct 2035 TTACTATCAAAATATATAT 2053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83151004835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5