BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12100.1
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928932 jgi|Araly1|928932|scaffold_301389.1 1927 0.0
> Ahg928932 jgi|Araly1|928932|scaffold_301389.1
Length=1222
Score = 1927 bits (1043), Expect = 0.0
Identities = 1154/1208 (96%), Gaps = 6/1208 (0%)
Strand=Plus/Plus
Query 47 AAAATGGAGAGATCCATTTCCTTTAATCCTCGAGGCGATAACGAGCTCCCTG-ATGATCG 105
||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 18 AAAATGGAGAGATCCATTTCCTTTAATCCTCGATGCGATAACGAGCTCCC-GAATGATCG 76
Query 106 GAGCAGCGATGTCGGATATGCTGCTAATGATCGGAGGCTTGCTTATTCTCGCTCGTTTCA 165
|||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 77 GAGCAGCGATGTTGGATATGTTGCTAATGATCGGAGGCTTGCTTATTCCCGTTCGTTTCA 136
Query 166 GCAATCTCACGGTCCACGAACGCCGGCGGTCACGGAAGCGGCTAAGCCTTTTCTCGATAG 225
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 137 GCAATCTCACGGTCCACGAACGCCGGCGGTCACGGAAGCAGCTAAGCCTTTTCTCGATAG 196
Query 226 GACGGTCTCGAGCATCGATATGCCGCCGGATATTTACTCCGTTGA-TGGAAGTGATGTGT 284
|||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||
Sbjct 197 GACGGTCTCGAGCATCGATATGCCGCCGGAGATTTACTCCGTCGACGGGAA-TGATGTGT 255
Query 285 TTTTCGGGGAAGGGAAAGATGTAGACAT-GGCAAAAGTGTCTGTTTTGGAAATGGTTTGG 343
||| ||||||||||||||| ||||| || || |||||||||||||||||| |||||||||
Sbjct 256 TTTACGGGGAAGGGAAAGACGTAGAAATAGG-AAAAGTGTCTGTTTTGGATATGGTTTGG 314
Query 344 GAGGTTTTTGGAGTAGTGACAAGTGGAAATCGGCAGATGAAGAGACTGTTTCTGCTAATT 403
||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 315 GAGATTTTTGGAGTACTGAGAAGTGGAAATCGGCAGATGAAGAGGTTGTTTCTGCTGATT 374
Query 404 GCGCTTAATGTGTTGTATTCTACAACAGAGCTCTCTATTGGTATCTTCACTGGTCGTGTA 463
||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 375 GCGCTTAATGTCTTGTATTCTACAACAGAGCTTTCTATTGGGATCTTCACTGGGCGTGTA 434
Query 464 GGTTTGGTCTCTGATGCATTCCATTTGACATTTGGTTGTGGTCTCTTGACATTTTCTTTA 523
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 435 GGTTTGGTCTCCGATGCATTCCATTTGACATTTGGTTGTGGGCTCTTGACATTTTCTTTA 494
Query 524 TTTGCAATGGCAACTTCAAGGAAGAAGCCTGATCATGCTTACTCATACGGGTACAAAAGA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTTGCAATGGCAACTTCAAGGAAGAAGCCTGATCATGCTTACTCATACGGGTACAAAAGA 554
Query 584 CTTGAAGTTTTATCTGCTTTCACTAATGCTCTGTTCCTTATGTTCATGTCATTCTCCTTA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CTTGAAGTTTTATCTGCTTTCACTAATGCTCTGTTCCTTATGTTCATGTCATTCTCCTTA 614
Query 644 GCTGTGGAAGCTCTTCATGCATTTATACAAGATGAATCAGAGCATAAGCATTATTTGATT 703
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 615 GCTGTGGAAGCTCTTCATGCATTTATACAAGATGAATCAGAGCACAAGCATTATTTGATT 674
Query 704 GTATCAGCGGTAACAAATCTGCTGGTGAACCTACTAGGTGTTTGGTTTTTCCGGAATTAT 763
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 675 GTATCAGCCGTAACAAATCTACTGGTGAACCTACTAGGTGTTTGGTTCTTCCGGAATTAT 734
Query 764 GCTCGTGTCAATATTGCCTACAGAAAAGCAGAAGATATGAATTATCACTCCGTTTGCTTG 823
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 735 GCTCGTGTCAATATTGCCTACAGAAAAGCAGAAGATATGAATTACCACTCTGTTTGCTTG 794
Query 824 CACGTCATATCAGATTCCATCCGCAGTGCAGGTTTGATACTGGCATCTTGGCTCCTCTCG 883
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CACGTCATAGCAGATTCCATCCGCAGTGCAGGTTTGATACTGGCATCTTGGCTCCTCTCT 854
Query 884 CTCGGGGTTGAAAATGCAGAGGTCCTATGTTTAGGATTGGTATCGGTCACAGTGTTTATG 943
|||||||||||||||||||| |||||||||||||| |||||||| || || |||||||||
Sbjct 855 CTCGGGGTTGAAAATGCAGAAGTCCTATGTTTAGGGTTGGTATCCGTTACCGTGTTTATG 914
Query 944 CTTGTTATGCCACTCTTCAAAGCCACTGGTGGTGTCTTGCTTCAGATGGCACCCCCAAAC 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CTTGTTATGCCACTCTTCAAAGCCACTGGTGGTGTCTTGCTTCAGATGGCACCCCCAAAC 974
Query 1004 ATTCCTTCTTCTGCTTTAAGCAAATGCTTGCGACAGATTACTTCTCGAGAAGATGTAACG 1063
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 975 ATTCCTTCTTCCGCATTAAGCAAATGCTTGCGACAGATTACTTCTCGAGAAGATGTCATG 1034
Query 1064 GAGGTTTTACAGGCACGTTTCTGGGAGGTTGTGCCTGGTCACACTGTTGGCTCACTCAGA 1123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1035 GAGGTTTTACAGGCACGTTTCTGGGAGGTTGTGCCTGGTCACACTGTGGGCTCACTCAGA 1094
Query 1124 CTCCAGGTGAAGAGCGGAATAGATGAAAGACCATTACTGCAATATGTATATGATGTATAC 1183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1095 CTCCAGGTGAAGAGCGGAATAGATGAAAGGCCATTACTGCAATATGTATATGATGTATAC 1154
Query 1184 CATGATTTGGGTGTACAAGACTTGACCCTGCAAACTGATTACACCTAAGCTGCATCTGCC 1243
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1155 CATGATTTGGGTGTACAAGACTTGACCCTGCAAACTGATTACACTTGAGCTGCATCTGCG 1214
Query 1244 TCTTCTTT 1251
|| |||||
Sbjct 1215 TCATCTTT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5