BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12130.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317994 jgi|Araly1|317994|fgenesh1_pm.C_scaffold_3001010 1164 0.0
> Ahg317994 jgi|Araly1|317994|fgenesh1_pm.C_scaffold_3001010
Length=738
Score = 1164 bits (630), Expect = 0.0
Identities = 702/736 (95%), Gaps = 8/736 (1%)
Strand=Plus/Plus
Query 191 ATGGATACTCGTAAGAGAGGACGGCCTGAAGCTGGCTCATTCAACTCCAATGGCGGCGGA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATACTCGTAAGAGAGGACGGCCTGAAGCTGGCTCATTCAACTCCAATGGCGGCGGA 60
Query 251 TACAAGAAGTCTAAGCAAGAGATGGAATCATATTCAACTGGTTTAGGAAGCAAATCGAAG 310
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCAAGAAGTCTAAGCAAGAGATGGAATCATATTCAACTGGTTTAGGAAGCAAATCGAAG 120
Query 311 CCATGCACAAAATTTTTCAGTACTTCTGGCTGTCCTTTCGGAGAGAATTGCCATTTCTTG 370
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||
Sbjct 121 CCATGCACAAAATTTTTCAGCACTTCTGGCTGTCCTTTTGGAGAGAATTGTCATTTCCTG 180
Query 371 CATTATGTTCCCGGAGGATACAATGCTGTATCGCAGATGACAAATATGGGACCACCCATT 430
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 CATTATGTTCCCGGAGGATACAATGCTGTAGCGCAGATGACAAATATGGGACCACCCATG 240
Query 431 CCTCAAGTTTCCAGAAACATGCAAGGTTCTGGTAATGGAGGCCGATTCTCAGGGAGGGGA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCAAGTTTCCAGAAACATGCAAGGTTCTGGTAATGGAGGCCGATTCTCAGGGAGGGGA 300
Query 491 GAGTCTGGGCCTGGCCATGTCTCTAACTTTGGTGACTCAGCCACTGCCAGA-TTCAGTGT 549
||||||||||||||||||||||||| |||||||| |||||||||||||| | || |||||
Sbjct 301 GAGTCTGGGCCTGGCCATGTCTCTAGCTTTGGTGCCTCAGCCACTGCCAAAATT-AGTGT 359
Query 550 TGATGCCTCTTTAGCCGGTGCAATCATTGGGAAAGGCGGAGTCAGTTCAAAGCAGATATG 609
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 360 TGATGCCTCTTTAGCCGGTGCAATCATTGGAAAAGGTGGAGTCAGTTCAAAGCAGATATG 419
Query 610 TCGTCAGACGGGAGTAAAATTATCAATTCAAGATCACGAGAGAGACCCAAACTTGAAGAA 669
|||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCGTCAGACGGGGGCAAAGTTATCAATTCAAGATCACGAGAGAGACCCAAACTTGAAGAA 479
Query 670 CATTGTGCTTGAAGGAACACTTGAGCAGATAAGCGAAGCGAGTGCAATGGTAAAAGATTT 729
||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||
Sbjct 480 CATTGAGCTTGAAGGAACATTTGAGCAGATAAACGAAGCGAGTGCAATGGTAAGAGAATT 539
Query 730 GATTGGGAGGCTTAATTCAGCAGCTAAGAAACCACCtggtggtggtcttggtggtggtgg 789
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 540 GATTGGGAGGCTTAATTCAGCAGCTAAGAAACCACCTGGCGGT---CTTGGTGGTGGTGG 596
Query 790 tggCATGGGTTCTGAAGGGAAACCACATCCAGGGAGCAACTTCAAGACTAAGATATGTGA 849
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 597 ---CATGGGTTCTGAAGGGAAACCGCATCCAGGGAGCAACTTTAAGACTAAGATATGTGA 653
Query 850 GAGATTCTCAAAAGGAAACTGTACATTTGGTGATAGATGTCACTTTGCTCATGGGGAAGC 909
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAGATACTCTAAAGGAAACTGTACATTTGGTGATAGATGTCACTTTGCTCATGGGGAAGC 713
Query 910 AGAGCTACGCAAGTCA 925
||||||||||| ||||
Sbjct 714 AGAGCTACGCAGGTCA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5