BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12140.3 Length=1535 Score E Sequences producing significant alignments: (Bits) Value Ahg478573 jgi|Araly1|478573|fgenesh2_kg.3__1274__AT3G12140.3 1759 0.0 Ahg487491 jgi|Araly1|487491|fgenesh2_kg.6__625__AT5G06780.1 573 1e-162 > Ahg478573 jgi|Araly1|478573|fgenesh2_kg.3__1274__AT3G12140.3 Length=1347 Score = 1759 bits (952), Expect = 0.0 Identities = 1155/1247 (93%), Gaps = 37/1247 (3%) Strand=Plus/Plus Query 94 TTTTTGTCCAATTCTTTCAACTTCTCGTTCCAATCCCCTCAATTCTCCGTTTCACCGAAC 153 ||||| || ||||||||||| |||||||| |||||||||||||||| ||||||||||||| Sbjct 52 TTTTTTTCAAATTCTTTCAATTTCTCGTTTCAATCCCCTCAATTCTTCGTTTCACCGAAC 111 Query 154 GCACTTCGAACCCTTAATTGC-TTTTTGCGGGTCAAGTTTCGATTCGAGCGTTTTAGGGT 212 |||| |||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||| Sbjct 112 GCACGTCGAACCCTTAATTGCTTTTTTTCGGGTTAAGTTTCGATTCGAGCTTTTTAGGGT 171 Query 213 TTCGTATCTGAATCGGTCGACAAGATAAACCCTTTTGTGGGGGTTTCCTCTAGATTTCGA 272 |||||||||||||||||||||||| ||||||||||||| || |||| ||| Sbjct 172 TTCGTATCTGAATCGGTCGACAAGGTAAACCCTTTTGT---GG---------GATTCCGA 219 Query 273 AAACAGAGGGATAGCTTTCGTTTGGATGGAAATTCTCTGAAACTAAACTACATAGTGATA 332 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 220 AAACAGAGGTATAGCTTTCGTTTGGATGGGAATTCTCTGAAACTAAACTACATAGTGATA 279 Query 333 TGGAGACACAAATTCATCAACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTA 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 280 TGGAGACACAAATTCATCAACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTA 339 Query 393 AAGCGCAGTCTGATGCGATTTCTTGGGAAAAAGAAAGCTTGATAACCGAATTGCGTAAAG 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 AAGCGCAGTCTGATGCGATTTCTTGGGAAAAAGAAAGCTTGATAACCGAATTGCGTAAAG 399 Query 453 AATTGAGAGTATCTGATGATGAACATCGAGAGCTTCTCAGTAGGGTCAATAAGGATGATA 512 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 400 AATTGAGAGTATCTGATGATGAACATCGAGAGCTTCTGAGTAGGGTTAATAAGGATGATA 459 Query 513 CTATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGCAAGCCAAATTACTAGACATGCAA 572 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 460 CTATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGGAAGCCAAAATACTAGACATGCAA 519 Query 573 CTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCTCAGCTGCCCGAAAGAAACAGA 632 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 520 CTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCTCAGCTGGCCGAAAGAAACAGA 579 Query 633 AAACATTTCCA-TCTTATAATCCATCAATTGGTGCGACTGGAAATAGGTCATTCAATAAT 691 ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 580 AAACATT-CCAATCTTATCATCCATCAATTGGTGCGACTGGAAATAGGTCATTCAATAGT 638 Query 692 CGTCTGGTATCCAGTGGCATATCAGGAAATGAATCTGCTGAAGCTCTGATCGGAAGAAAA 751 ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 639 CGTGTGGTATCTGGTGGCATATCAGGAAATGAATCTGCTGAAGCTTTGATCGGAAGAAAA 698 Query 752 GTGTGGACAAAATGGCCTGAAGATAACCACTTCTATGAAGCAATTATAACCCAGTACAAT 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 699 GTGTGGACAAAATGGCCTGAAGATAACCACTTCTATGAAGCAATTATAACCCAGTACAAT 758 Query 812 GCAGATGAGGGTCGGCATGCTTTGGTGTATGATATACACGCAGCTAATGAAACGTGGGAA 871 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 759 GCAGATGATGGTCGGCATGCTTTGGTGTATGATATACATGCAGCTAATGAAACGTGGGAA 818 Query 872 TGGGTTGATCTCAAGGAGATACCACCGGAAGACATAAGATGGGATGGGGAGGAGAGTGGG 931 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| Sbjct 819 TGGGTTGATCTCAAGGAGATACCACCGGAAGATATACGGTGGGATGGGGAGGAGAGTGGG 878 Query 932 GTAGCTTTAAACATTGGACATGGAAGTGCATCCTTCCGTGGCAACAGAAGAGGCCAAATC 991 |||||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||| || Sbjct 879 GTAGCTTTAAACATCGGACATGGAAGTGGATCATTCCGTGGCAACCGAAGAAGCCAAGTC 938 Query 992 CATGGTGGTAGAGGGAGAGGACCAAGAATTCATCAACCAAGAAGGGAACT-TGTACCGCC 1050 |||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||| || Sbjct 939 CATGGTGGTAGAGGGAGAGGGCCAAGAATTCATCAACCAAGAAGAGAACTCT-TACCACC 997 Query 1051 ACCAACACAACAGAATGGTAGTGGTGGGCGGAGAACTTCCTCTGATGATATTGAGTTGTT 1110 ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| Sbjct 998 ACCAACACAACAGAATGGTGGTGGTGGTCGGAGAACTTCCTCTGATGATATTGAATTGTT 1057 Query 1111 CAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTACGCATCCTGATCC 1170 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1058 CAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTACTCATCCTGATCC 1117 Query 1171 ACTCGAGCTCGACAAGGCCAAGAAAATGCTCAAG-GAACA-TGAACAGGCACTCATTGCT 1228 ||||||||||| ||||||||||||||||||||| ||| | | |||| || | | | Sbjct 1118 GCTCGAGCTCGATAAGGCCAAGAAAATGCTCAAGAGAATAAT-AACAA-CA---A--G-T 1169 Query 1229 GCCATTGCAAGGCTTGCTGATACTTCGGATGGCGAAATGGGTAATAATAACAAAAGCACG 1288 | | || ||||||||||||| |||||||||||||||||||||||||||| || | Sbjct 1170 G---T-GC-----TTGCTGATACTTCTGATGGCGAAATGGGTAATAATAACAAAATCATG 1220 Query 1289 CTACGTTTAGTTTGCAACCTCAGAATAATATATTATTTACCATTGAA 1335 ||| |||||||||| | |||||||||| || ||||||||| ||||| Sbjct 1221 CTATGTTTAGTTTGTGATCTCAGAATAA-ATTTTATTTACCCTTGAA 1266 Score = 52.8 bits (28), Expect = 7e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 7 GAGTCCCGGAGAAATCGATCGTAGCTCT 34 |||||||||||||||||||||||||||| Sbjct 1 GAGTCCCGGAGAAATCGATCGTAGCTCT 28 > Ahg487491 jgi|Araly1|487491|fgenesh2_kg.6__625__AT5G06780.1 Length=1504 Score = 573 bits (310), Expect = 1e-162 Identities = 788/1006 (78%), Gaps = 83/1006 (8%) Strand=Plus/Plus Query 279 AGGGATAGCTTTCGTTTGGATGGAAATTCTCT-GAAACTAAACTACATAGTGATATGG-A 336 |||| ||| |||| |||||||||||| | | | | | | ||||| | | |||||| | Sbjct 326 AGGGCTAG-TTTCATTTGGATGGAAAGTATATGGTAGGT---CTACACATTAATATGGAA 381 Query 337 GACACAAATTCATCA-ACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTAAAG 395 | | || |||||| | ||||||||||||||| ||| | ||||| |||||||||||| ||| Sbjct 382 G-CGCAGATTCAT-ATACTTGAGCAGGAAGCTTATTCTGCTGTATTAAGGGCTTTTCAAG 439 Query 396 CGCAGTCTGATGCGA-TTTCTTGGGAAAAAGAAAG-CTTGATAACCGAA-TTGCGTAAAG 452 | ||| |||||| | |||||||||| ||| ||| | |||| | | || | ||||||| Sbjct 440 CACAGGCTGATG-AATTTTCTTGGGATAAA-CAAGACGTGATGA-CAAACCTACGTAAAG 496 Query 453 AATTGA-GAGTATCTGATGATGAACATCGAGAGCT-TCT-CAGTAGGGTCAATAAGGATG 509 |||||| || |||||||||||||| | ||||| || | | | | || |||| |||| Sbjct 497 AATTGAGGA-TATCTGATGATGAAAACCGAGAACTGT-TGAACAATCTTC-ATAATGATG 553 Query 510 ATAC-TATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGCAAGCCAAATTACTAGACAT 568 || | |||| | || |||||||||| ||||| |||| | || ||| || ||||||| Sbjct 554 AT-CTTATCAAAAGAATAAGAGATTCGAGACCTAGAGGTGGAAACCAGGTTGTTAGACAT 612 Query 569 GCAACTATTCAGCCTTTTGATGTTCTTCCTAGTCCCA-CTTTCTCAGCTGCCCGAAAGAA 627 | | | || || | ||||||||||||||||| | |||| |||||| | |||||||| Sbjct 613 -C-A--A-TC--CC--TCGATGTTCTTCCTAGTCCGACCTTT-TCAGCTTCTCGAAAGAA 662 Query 628 ACAGAAAACATTTCC-ATCTTATAATCCATCAATTGGTGCGACTGGAAATAGGTCATTCA 686 |||||| || |||| ||| | |||| || |||||| | ||| |||||| ||| |||| Sbjct 663 ACAGAAGAC-GTTCCAATC--CT-ATCCGTCGATTGGTTCTACTAGAAATAAGTCGTTCA 718 Query 687 ATAATCGTCTGGTATCCAGTGGCATATCAGGAAATGAATCTGCTGAAGCTCTGATCGGAA 746 |||| | | || | ||| | | ||| ||||||| | ||||||||||| || |||| Sbjct 719 ATAA-C--C--GTGT--AGT---A-A-CAGCAAATGAACCCGCTGAAGCTCTTATTGGAA 766 Query 747 GAAAAGTGTGGACAAAATGGCCTGAAGATAACCA-CTTCTATGAAGCAATTA-TAACCCA 804 ||||||||||||||||||||||||| || ||| | ||| ||||||||| | | | || || Sbjct 767 GAAAAGTGTGGACAAAATGGCCTGATGACAAC-AGCTTTTATGAAGCAGT-AGTGACACA 824 Query 805 GTACAATGCAGATGAGGGTCGGCATGCTTTGGTGTATGATATACACGCAGCTAATGAAAC 864 ||||||||||||||||| || ||||| ||||| ||||| ||| || |||| ||||| || Sbjct 825 ATACAATGCAGATGAGGGGCGACATGCGTTGGTATATGACATAAACACAGCCAATGAGAC 884 Query 865 GTGGGAATGGGTTGATCTCAAGGAGATACCACCGGAAGACATAAGATGGGATGGGGAGGA 924 |||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| Sbjct 885 GTGGGAATGGGTTGATCTTAAGGAGATTCCACCGGAAGATATAAGATGGGATGGAGAGGA 944 Query 925 GAGTGGGGTAGCTTTAAACATTGGACATGGAAGTGCATCCTTCCGTGGCAA-CAGAAGAG 983 || ||||||| ||||||| | |||||||| ||| | | |||||| || | ||||| Sbjct 945 GAATGGGGTAACTTTAAATGTAGGACATGGCGGTGGAACAACCCGTGGGAATC-GAAGAA 1003 Query 984 GCCA-AATCCATGGTGGTAGAGGGAGAGGACCAAGAATTCATCAACCAAGAAGGGAAC-T 1041 || || ||||||||||||||||||||| ||||||| | ||| |||||||| |||| | Sbjct 1004 -CCTTAAGCCATGGTGGTAGAGGGAGAGGTCCAAGAA--C-TCAGCCAAGAAGAGAACAT 1059 Query 1042 TGTACCGCCACCAACACAACAGAATGGTAGTGGTGGGCGGAGAACTTCCTCTGATGATAT 1101 | || || || | | ||| | | | | | |||| ||| | || || ||||| || Sbjct 1060 T-TA--GCAACGGA-A-AAC-G---G-T-G-G-TGGGAGGA-AGTTTT-TC-GATGAGAT 1103 Query 1102 TGAGTTGTTCAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTA-CGC 1160 ||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||| | | Sbjct 1104 TGAATTGTTCAACACAGACTCACTTGTGAAAGAGGTGGAGAGAGTTTTTGATTCTAAC-C 1162 Query 1161 ATCCTGATCCAC-TCGAGCTCGACAAGGCCAAGAAAATGCTCAAGGAACATGAACAGGCA 1219 ||||||||||| | ||||| || |||||||||||| | |||||||||||||||||||| Sbjct 1163 TTCCTGATCCACAT-GAGCTTGATAAGGCCAAGAAACTACTCAAGGAACATGAACAGGCG 1221 Query 1220 CTCATTGCTGCCATTGCAAGGCTTGCTGATACTTCGGATGGCGAAA 1265 || ||||||||||||||||||||||| ||| |||| ||| ||||| Sbjct 1222 CTTATTGCTGCCATTGCAAGGCTTGCGGATGCTTCTGATTACGAAA 1267 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57478179705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5