BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12140.3
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478573 jgi|Araly1|478573|fgenesh2_kg.3__1274__AT3G12140.3 1759 0.0
Ahg487491 jgi|Araly1|487491|fgenesh2_kg.6__625__AT5G06780.1 573 1e-162
> Ahg478573 jgi|Araly1|478573|fgenesh2_kg.3__1274__AT3G12140.3
Length=1347
Score = 1759 bits (952), Expect = 0.0
Identities = 1155/1247 (93%), Gaps = 37/1247 (3%)
Strand=Plus/Plus
Query 94 TTTTTGTCCAATTCTTTCAACTTCTCGTTCCAATCCCCTCAATTCTCCGTTTCACCGAAC 153
||||| || ||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 52 TTTTTTTCAAATTCTTTCAATTTCTCGTTTCAATCCCCTCAATTCTTCGTTTCACCGAAC 111
Query 154 GCACTTCGAACCCTTAATTGC-TTTTTGCGGGTCAAGTTTCGATTCGAGCGTTTTAGGGT 212
|||| |||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||
Sbjct 112 GCACGTCGAACCCTTAATTGCTTTTTTTCGGGTTAAGTTTCGATTCGAGCTTTTTAGGGT 171
Query 213 TTCGTATCTGAATCGGTCGACAAGATAAACCCTTTTGTGGGGGTTTCCTCTAGATTTCGA 272
|||||||||||||||||||||||| ||||||||||||| || |||| |||
Sbjct 172 TTCGTATCTGAATCGGTCGACAAGGTAAACCCTTTTGT---GG---------GATTCCGA 219
Query 273 AAACAGAGGGATAGCTTTCGTTTGGATGGAAATTCTCTGAAACTAAACTACATAGTGATA 332
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 220 AAACAGAGGTATAGCTTTCGTTTGGATGGGAATTCTCTGAAACTAAACTACATAGTGATA 279
Query 333 TGGAGACACAAATTCATCAACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTA 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TGGAGACACAAATTCATCAACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTA 339
Query 393 AAGCGCAGTCTGATGCGATTTCTTGGGAAAAAGAAAGCTTGATAACCGAATTGCGTAAAG 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 AAGCGCAGTCTGATGCGATTTCTTGGGAAAAAGAAAGCTTGATAACCGAATTGCGTAAAG 399
Query 453 AATTGAGAGTATCTGATGATGAACATCGAGAGCTTCTCAGTAGGGTCAATAAGGATGATA 512
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 400 AATTGAGAGTATCTGATGATGAACATCGAGAGCTTCTGAGTAGGGTTAATAAGGATGATA 459
Query 513 CTATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGCAAGCCAAATTACTAGACATGCAA 572
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 460 CTATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGGAAGCCAAAATACTAGACATGCAA 519
Query 573 CTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCTCAGCTGCCCGAAAGAAACAGA 632
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 520 CTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCTCAGCTGGCCGAAAGAAACAGA 579
Query 633 AAACATTTCCA-TCTTATAATCCATCAATTGGTGCGACTGGAAATAGGTCATTCAATAAT 691
||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 580 AAACATT-CCAATCTTATCATCCATCAATTGGTGCGACTGGAAATAGGTCATTCAATAGT 638
Query 692 CGTCTGGTATCCAGTGGCATATCAGGAAATGAATCTGCTGAAGCTCTGATCGGAAGAAAA 751
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 639 CGTGTGGTATCTGGTGGCATATCAGGAAATGAATCTGCTGAAGCTTTGATCGGAAGAAAA 698
Query 752 GTGTGGACAAAATGGCCTGAAGATAACCACTTCTATGAAGCAATTATAACCCAGTACAAT 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GTGTGGACAAAATGGCCTGAAGATAACCACTTCTATGAAGCAATTATAACCCAGTACAAT 758
Query 812 GCAGATGAGGGTCGGCATGCTTTGGTGTATGATATACACGCAGCTAATGAAACGTGGGAA 871
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 759 GCAGATGATGGTCGGCATGCTTTGGTGTATGATATACATGCAGCTAATGAAACGTGGGAA 818
Query 872 TGGGTTGATCTCAAGGAGATACCACCGGAAGACATAAGATGGGATGGGGAGGAGAGTGGG 931
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 819 TGGGTTGATCTCAAGGAGATACCACCGGAAGATATACGGTGGGATGGGGAGGAGAGTGGG 878
Query 932 GTAGCTTTAAACATTGGACATGGAAGTGCATCCTTCCGTGGCAACAGAAGAGGCCAAATC 991
|||||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||| ||
Sbjct 879 GTAGCTTTAAACATCGGACATGGAAGTGGATCATTCCGTGGCAACCGAAGAAGCCAAGTC 938
Query 992 CATGGTGGTAGAGGGAGAGGACCAAGAATTCATCAACCAAGAAGGGAACT-TGTACCGCC 1050
|||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||| ||
Sbjct 939 CATGGTGGTAGAGGGAGAGGGCCAAGAATTCATCAACCAAGAAGAGAACTCT-TACCACC 997
Query 1051 ACCAACACAACAGAATGGTAGTGGTGGGCGGAGAACTTCCTCTGATGATATTGAGTTGTT 1110
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 998 ACCAACACAACAGAATGGTGGTGGTGGTCGGAGAACTTCCTCTGATGATATTGAATTGTT 1057
Query 1111 CAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTACGCATCCTGATCC 1170
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1058 CAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTACTCATCCTGATCC 1117
Query 1171 ACTCGAGCTCGACAAGGCCAAGAAAATGCTCAAG-GAACA-TGAACAGGCACTCATTGCT 1228
||||||||||| ||||||||||||||||||||| ||| | | |||| || | | |
Sbjct 1118 GCTCGAGCTCGATAAGGCCAAGAAAATGCTCAAGAGAATAAT-AACAA-CA---A--G-T 1169
Query 1229 GCCATTGCAAGGCTTGCTGATACTTCGGATGGCGAAATGGGTAATAATAACAAAAGCACG 1288
| | || ||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 1170 G---T-GC-----TTGCTGATACTTCTGATGGCGAAATGGGTAATAATAACAAAATCATG 1220
Query 1289 CTACGTTTAGTTTGCAACCTCAGAATAATATATTATTTACCATTGAA 1335
||| |||||||||| | |||||||||| || ||||||||| |||||
Sbjct 1221 CTATGTTTAGTTTGTGATCTCAGAATAA-ATTTTATTTACCCTTGAA 1266
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 7 GAGTCCCGGAGAAATCGATCGTAGCTCT 34
||||||||||||||||||||||||||||
Sbjct 1 GAGTCCCGGAGAAATCGATCGTAGCTCT 28
> Ahg487491 jgi|Araly1|487491|fgenesh2_kg.6__625__AT5G06780.1
Length=1504
Score = 573 bits (310), Expect = 1e-162
Identities = 788/1006 (78%), Gaps = 83/1006 (8%)
Strand=Plus/Plus
Query 279 AGGGATAGCTTTCGTTTGGATGGAAATTCTCT-GAAACTAAACTACATAGTGATATGG-A 336
|||| ||| |||| |||||||||||| | | | | | | ||||| | | |||||| |
Sbjct 326 AGGGCTAG-TTTCATTTGGATGGAAAGTATATGGTAGGT---CTACACATTAATATGGAA 381
Query 337 GACACAAATTCATCA-ACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTAAAG 395
| | || |||||| | ||||||||||||||| ||| | ||||| |||||||||||| |||
Sbjct 382 G-CGCAGATTCAT-ATACTTGAGCAGGAAGCTTATTCTGCTGTATTAAGGGCTTTTCAAG 439
Query 396 CGCAGTCTGATGCGA-TTTCTTGGGAAAAAGAAAG-CTTGATAACCGAA-TTGCGTAAAG 452
| ||| |||||| | |||||||||| ||| ||| | |||| | | || | |||||||
Sbjct 440 CACAGGCTGATG-AATTTTCTTGGGATAAA-CAAGACGTGATGA-CAAACCTACGTAAAG 496
Query 453 AATTGA-GAGTATCTGATGATGAACATCGAGAGCT-TCT-CAGTAGGGTCAATAAGGATG 509
|||||| || |||||||||||||| | ||||| || | | | | || |||| ||||
Sbjct 497 AATTGAGGA-TATCTGATGATGAAAACCGAGAACTGT-TGAACAATCTTC-ATAATGATG 553
Query 510 ATAC-TATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGCAAGCCAAATTACTAGACAT 568
|| | |||| | || |||||||||| ||||| |||| | || ||| || |||||||
Sbjct 554 AT-CTTATCAAAAGAATAAGAGATTCGAGACCTAGAGGTGGAAACCAGGTTGTTAGACAT 612
Query 569 GCAACTATTCAGCCTTTTGATGTTCTTCCTAGTCCCA-CTTTCTCAGCTGCCCGAAAGAA 627
| | | || || | ||||||||||||||||| | |||| |||||| | ||||||||
Sbjct 613 -C-A--A-TC--CC--TCGATGTTCTTCCTAGTCCGACCTTT-TCAGCTTCTCGAAAGAA 662
Query 628 ACAGAAAACATTTCC-ATCTTATAATCCATCAATTGGTGCGACTGGAAATAGGTCATTCA 686
|||||| || |||| ||| | |||| || |||||| | ||| |||||| ||| ||||
Sbjct 663 ACAGAAGAC-GTTCCAATC--CT-ATCCGTCGATTGGTTCTACTAGAAATAAGTCGTTCA 718
Query 687 ATAATCGTCTGGTATCCAGTGGCATATCAGGAAATGAATCTGCTGAAGCTCTGATCGGAA 746
|||| | | || | ||| | | ||| ||||||| | ||||||||||| || ||||
Sbjct 719 ATAA-C--C--GTGT--AGT---A-A-CAGCAAATGAACCCGCTGAAGCTCTTATTGGAA 766
Query 747 GAAAAGTGTGGACAAAATGGCCTGAAGATAACCA-CTTCTATGAAGCAATTA-TAACCCA 804
||||||||||||||||||||||||| || ||| | ||| ||||||||| | | | || ||
Sbjct 767 GAAAAGTGTGGACAAAATGGCCTGATGACAAC-AGCTTTTATGAAGCAGT-AGTGACACA 824
Query 805 GTACAATGCAGATGAGGGTCGGCATGCTTTGGTGTATGATATACACGCAGCTAATGAAAC 864
||||||||||||||||| || ||||| ||||| ||||| ||| || |||| ||||| ||
Sbjct 825 ATACAATGCAGATGAGGGGCGACATGCGTTGGTATATGACATAAACACAGCCAATGAGAC 884
Query 865 GTGGGAATGGGTTGATCTCAAGGAGATACCACCGGAAGACATAAGATGGGATGGGGAGGA 924
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 885 GTGGGAATGGGTTGATCTTAAGGAGATTCCACCGGAAGATATAAGATGGGATGGAGAGGA 944
Query 925 GAGTGGGGTAGCTTTAAACATTGGACATGGAAGTGCATCCTTCCGTGGCAA-CAGAAGAG 983
|| ||||||| ||||||| | |||||||| ||| | | |||||| || | |||||
Sbjct 945 GAATGGGGTAACTTTAAATGTAGGACATGGCGGTGGAACAACCCGTGGGAATC-GAAGAA 1003
Query 984 GCCA-AATCCATGGTGGTAGAGGGAGAGGACCAAGAATTCATCAACCAAGAAGGGAAC-T 1041
|| || ||||||||||||||||||||| ||||||| | ||| |||||||| |||| |
Sbjct 1004 -CCTTAAGCCATGGTGGTAGAGGGAGAGGTCCAAGAA--C-TCAGCCAAGAAGAGAACAT 1059
Query 1042 TGTACCGCCACCAACACAACAGAATGGTAGTGGTGGGCGGAGAACTTCCTCTGATGATAT 1101
| || || || | | ||| | | | | | |||| ||| | || || ||||| ||
Sbjct 1060 T-TA--GCAACGGA-A-AAC-G---G-T-G-G-TGGGAGGA-AGTTTT-TC-GATGAGAT 1103
Query 1102 TGAGTTGTTCAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTA-CGC 1160
||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||| | |
Sbjct 1104 TGAATTGTTCAACACAGACTCACTTGTGAAAGAGGTGGAGAGAGTTTTTGATTCTAAC-C 1162
Query 1161 ATCCTGATCCAC-TCGAGCTCGACAAGGCCAAGAAAATGCTCAAGGAACATGAACAGGCA 1219
||||||||||| | ||||| || |||||||||||| | ||||||||||||||||||||
Sbjct 1163 TTCCTGATCCACAT-GAGCTTGATAAGGCCAAGAAACTACTCAAGGAACATGAACAGGCG 1221
Query 1220 CTCATTGCTGCCATTGCAAGGCTTGCTGATACTTCGGATGGCGAAA 1265
|| ||||||||||||||||||||||| ||| |||| ||| |||||
Sbjct 1222 CTTATTGCTGCCATTGCAAGGCTTGCGGATGCTTCTGATTACGAAA 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5