BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12145.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928939 jgi|Araly1|928939|scaffold_301396.1 1543 0.0
Ahg906742 jgi|Araly1|906742|Al_scaffold_0003_3870 691 0.0
Ahg904107 jgi|Araly1|904107|Al_scaffold_0003_1235 667 0.0
> Ahg928939 jgi|Araly1|928939|scaffold_301396.1
Length=1018
Score = 1543 bits (835), Expect = 0.0
Identities = 960/1021 (94%), Gaps = 6/1021 (1%)
Strand=Plus/Plus
Query 143 AGCATCCACACATAATCACGATGAAGctctttgttcatctctctatcttcttctccatcc 202
|||||||||||| |||||| ||||||||| |||||||||||||||||||||| || ||||
Sbjct 1 AGCATCCACACAAAATCACAATGAAGCTCCTTGTTCATCTCTCTATCTTCTTATCAATCC 60
Query 203 tcttcatcactctcccatcttcttACAGCTGCACCGAAAATGACAAGAATGCCCTCCTTC 262
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TCTTTGTCTCTCTCCCATCTTCTTACAGCTGCACCCCTAATGACAAGAATGCCCTCCTTC 120
Query 263 AAATCAAGAAAGCACTTG-GCAATCCTCCCCTTCTATCCTCCTGGAACCCCCGAACCGAC 321
||||||||||| || || ||| |||||||| || || |||||||||||||||||||||
Sbjct 121 AAATCAAGAAATTAC-TGAACAACCCTCCCCTCCTCTCTTCCTGGAACCCCCGAACCGAC 179
Query 322 TGTTGTACCGGCTGGACCGGCGTCGAATGCACTAACCGTCGCGTTACCGGTCTCAGCGTT 381
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 180 TGTTGTACCGGCTGGACCGGCGTCGAATGCACTAACCGTCGCGTTACAGCTCTCAGCGTT 239
Query 382 ACCTCCGGCGAAGTCTCCGGTCAGATCTCGTACCAGATCGGCGACCT-CGTTGACCTCCG 440
||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||
Sbjct 240 TCCTCCGGCGAAGTCTCCGGCCAGATCCCGTACCAGATCGGCGACCTAC-TTGACCTCCG 298
Query 441 TACACTAGATTTCAGCTACCTG-CCACACCTCACCGGAAACATCCCACGCACCATCACCA 499
|||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||
Sbjct 299 TACACTCGATTTCAGCTACCTGACCA-ACCTCACAGGAAACATCCCACGCACCATTACCA 357
Query 500 AACTCAAGAACCTCAACACTCTCTACTTGAAGCACACTAGTCTCTCCGGTCCGATTCCTG 559
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 358 AACTCAAGAACCTCAACACTCTCTTCTTAAAGCACACTAGTCTCTCCGGTCCGATTCCTG 417
Query 560 ATTACATCAGCGAGCTCAAGAGCCTCACGTTCTTGGACCTTTCTTTTAACCAATTTACCG 619
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 ATTACATCAGCGAGCTCAAGAGCCTCACGTTCTTGGACCTTTCCTTTAACCAATTTACCG 477
Query 620 GTCCAATTCCCGGTTCGCTATCTCAGATGCCGAAGCTTGAAGCCATTCAAATCAACGATA 679
||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 GTCGAATTCCCGGTTCACTGTCTCAGATGCCGAAGCTTGAAGCCATTCAGATCAACGATA 537
Query 680 ATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCTAATC 739
||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 538 ATAAGCTAACCGGCTCTGTACCGAATTCTTTCGGTTCTTTTGTTGGCAACGTCCCTAATC 597
Query 740 TCTACTTGTCTAACAATAAGCTGTCAGGAAAAATACCGGAATCGTTGTCTAAATACGACT 799
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTACTTGTCTAACAATAAGCTTTCAGGAAAAATACCGGAATCGTTGTCTAAATACGACT 657
Query 800 TCAACGCAGTGGATTTGTCGGGAAATGGTTTCGAAGGAGATGCCTTTATGTTCTTCGGAC 859
|||||||||||||| |||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 658 TCAACGCAGTGGATCTGTCCGGAAATGGTTTCGAAGGAGATGGCTTCATGTTCTTCGGAC 717
Query 860 GGAACAAAACAACAGTACGAGTGGATTTGTCGAGAAACATGTTTAATTTCGATCTCGTCA 919
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GGAACAAAACAACAGTACGAGTGGATCTGTCGAGAAACATGTTTAATTTCGATCTCGTCA 777
Query 920 AGGTTAAGTTCGCTAGAAGCATAGTTTCGTTGGATCTGAGCCAGAACCATATCTACGGGA 979
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 778 AGGTTAAGTTCGCTAGAAGCATAGTTTCGTTGGATCTGAGCCATAACCATATATACGGGA 837
Query 980 AGATACCACCAGCACTGACTAAACTACACCTCGAGCATTTCAACGTGAGCGACAACCATC 1039
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 838 AGATACCACCAGCGCTGACTAAACTACACCTCAAGCATTTCAACGTGAGCGACAATCATC 897
Query 1040 TCTGCGGAAAAATCCCAAGTGGCGGTCTACTTCAGACCTTTGAACCATCTGCCTTCGCTC 1099
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 898 TCTGTGGAAAAATCCCAAGTGGCGGTCTCCTTCAGACCTTTGAACCATCTGCCTACGCTC 957
Query 1100 ACAACATCTGTCTTTGTGGAACTCCCCTTAAGGCTTGTTAATTTGGTTTAATCTTGGCGG 1159
||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||
Sbjct 958 ACAACATCTGTCTTTGTGGGACTCCCCTTAAGGCTTGTTAAGTTCGTTTTATCTTGGCGG 1017
Query 1160 A 1160
|
Sbjct 1018 A 1018
> Ahg906742 jgi|Araly1|906742|Al_scaffold_0003_3870
Length=645
Score = 691 bits (374), Expect = 0.0
Identities = 562/650 (86%), Gaps = 23/650 (4%)
Strand=Plus/Plus
Query 502 CTCAAGAACCTCAACACT-CTCTACT-TGAAGCACACTAGTCTCTCCGGTCCGATTCCTG 559
||||||| ||||||| || |||| | | || ||||| | | |||||||||| |||||||
Sbjct 4 CTCAAGAGCCTCAAC-CTCCTCT-TTATAAAACACACCAATATCTCCGGTCCAATTCCTG 61
Query 560 ATTACATCAGCGAGCTCAAGAGCCTCACGTTCTTGGACCTTTCTTTTAACCAATTTACCG 619
|| |||||||||| ||||||| |||||| |||||||||||||| | ||||||||| || |
Sbjct 62 ATAACATCAGCGACCTCAAGAACCTCACTTTCTTGGACCTTTCCTATAACCAATTGACTG 121
Query 620 GTCCAATTCCCGGTTCGCTATCTCAGATGCCGAAGCTTGAAGCCATTCAAATCAACGATA 679
||||||||||||||||||||||||||||||| ||||||||||||||| | ||| | ||||
Sbjct 122 GTCCAATTCCCGGTTCGCTATCTCAGATGCCCAAGCTTGAAGCCATTGAGATCCATGATA 181
Query 680 ATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCT-AAT 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 182 ATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCTGAA- 240
Query 739 CTCTACTTGTCTAACAATAAGCTGTCAGGAAAAATACCGGAATCGTTGTCTAAATACGAC 798
||| |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||
Sbjct 241 CTCGACTTGTCTAACAATCAGCTCTCAGGGAAAATACCGGAATCGTTGTCAAAATACGAC 300
Query 799 TTCAACGCAGTGGATT-TGTCGGGAAATGGTTTCGAA-GGAGATGCCTTT-ATGTTCTTC 855
|||||||||||| || ||||||||||| ||||| | ||||||| || ||||| |||
Sbjct 301 TTCAACGCAGTGT-TTCTGTCGGGAAATAGTTTC-ACCGGAGATGG-TTCCATGTTTTTC 357
Query 856 GGACGGAACAAAACAACA-GTACGAGTGGATTTGTCGAGAAACATGTTTAATTTCGATCT 914
|||||||||||||||||| | || | ||||| ||||||||||||||||| | ||||||||
Sbjct 358 GGACGGAACAAAACAACAAG-ACAACTGGATCTGTCGAGAAACATGTTTCAGTTCGATCT 416
Query 915 CGTC-AAGGTTAAGTTCGCTAGAAGCATAGTTTCGTTGGATCTGAGCCAGAACC-ATATC 972
| || ||| || |||||||||| |||||| || |||||||||||||||| || | | |||
Sbjct 417 C-TCCAAGATTGAGTTCGCTAGGAGCATACTTACGTTGGATCTGAGCCAAAATCGA-ATC 474
Query 973 TACGGGAAGATACCACCAGCACTGACTAAACTAC-AC--CTCGAGCATTTCAACGTGAGC 1029
| ||| ||||| || | | |||||||| |||| | ||||||| |||||||||||||
Sbjct 475 TTCGGTAAGATTCCTCGGGTACTGACTACCCTACGAAGTCTCGAGCGTTTCAACGTGAGC 534
Query 1030 GACAACCA-TCTCTGCGGAAAAATCCCAAGTGGCGGTCTACTTCAGACCTTTGAACCATC 1088
|||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 535 TACAAT-AGTCTCTGCGGGAAAATCCCAAGTGGCGGTCGACTTCAGACCTTTGAACCATC 593
Query 1089 TGCCTTCGCTCACAACATCTGTCTTTGTGGAACTCCCCTTAAGGCTTGTT 1138
||||| | |||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 594 TGCCTACTCTCATAACCTCTGTCTTTGTGGGACTCCGCTTAAGGCTTGTT 643
> Ahg904107 jgi|Araly1|904107|Al_scaffold_0003_1235
Length=906
Score = 667 bits (361), Expect = 0.0
Identities = 578/680 (85%), Gaps = 25/680 (4%)
Strand=Plus/Plus
Query 473 CCGGAAACATCCCACGCACCATCACCAAACTCAAGAA-CCTCAACACTCTCTACTTGAAG 531
||||||||||||||| | | |||||||| ||||| || |||| |||| |||| || |||
Sbjct 236 CCGGAAACATCCCACCCGCGATCACCAAGCTCAA-AAGCCTCGACACCCTCTTTTTTAAG 294
Query 532 CACA-CTAGTCTCTCCGGTCCGATTCCTGATTACATCAGCGAGCTCAAGAGCCTCACGTT 590
||| | | | |||||||||||||||||||| |||||||||| ||||||| |||||| |
Sbjct 295 TACAGC-AATTTCTCCGGTCCGATTCCTGATAACATCAGCGATCTCAAGAACCTCACCTA 353
Query 591 CTTGGACCTTTCTTTTAACCAATTTACCGGTCCAATTCCCGGTTCGCTATCTCAGATGCC 650
||||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 354 CTTGGGCCTTTCCTTTAACCAATTGACCGGTCCGATTCCCGGTTCGCTATCTCAGATGCC 413
Query 651 GAAGCTTGAAGCCATTCAAATCAACGATAATAAGCTAACCGGTTCTATACCAAACTCTTT 710
|| |||| |||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 414 GATGCTTCAAGCCATTGAGCTCAACGATAATAAGCTAACCGGTTCTATACCAGACTCTTT 473
Query 711 CGGTTCTTTTGTTGGCAACGTCCCTA-ATCTCTACTTGTCTAACAATAAGC-TGTCAGGA 768
||||||||||||||||||| ||||| | ||| | |||||||||||| || | |||||
Sbjct 474 CGGTTCTTTTGTTGGCAACATCCCTGTA-CTCGAATTGTCTAACAATC-GCCTCTCAGGG 531
Query 769 AAAATACCGGAATCGTTGTCTAAATACGACTTCAACGCAGTGGATT-TGTCGGGAAATGG 827
|||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
Sbjct 532 AAAATACCGGAATCGTTGTCAAAATACGACTTCAACGCAGTGT-TTCTGTCGGGAAACAG 590
Query 828 TTTCGAA-GGAGATGCCTTT-ATGTTCTTCGGACGGAACAAAACAAC-AGTACGAGTGGA 884
||| | ||||||| || ||||| |||||||||||||||||||| | ||| | ||||
Sbjct 591 ATTC-ACCGGAGATGG-TTCCATGTTTTTCGGACGGAACAAAACAACTA-TACAACTGGA 647
Query 885 TTTGTCGAGAAACATGTTTAATTTCGATCTCGTC-AAGGTTAAGTTCGCTAGAAGCATAG 943
| ||||||||||||||||| | ||||||||| || |||||||| || ||||| ||||||
Sbjct 648 TCTGTCGAGAAACATGTTTCAGTTCGATCTC-TCTAAGGTTAAATTTGCTAGGAGCATAC 706
Query 944 TT-TCGTTGGATCTGAGCCAGAACC-ATATCTACGGGAAGATACCACCAGCACTGACTAA 1001
|| | ||||||||||||||| |||| | |||| || ||||| || | | || ||||
Sbjct 707 TTAT-GTTGGATCTGAGCCAAAACCGA-ATCTTTGGTAAGATTCCTCGGGTGCTAACTAC 764
Query 1002 ACTAC-AC--CTCGAGCATTTCAACGTGAGCGACAACCATCTCTGCGGAAAAATCCCAAG 1058
|||| || ||||||| ||||||||||||| |||| | ||||||||| |||||||||||
Sbjct 765 CCTACGACGTCTCGAGCGTTTCAACGTGAGCTACAATCGTCTCTGCGGGAAAATCCCAAG 824
Query 1059 TGGCGGTCTACTTCAGACCTTTGAACCATCTGCCTTCGCTCACAACATCTGTCTTTGTGG 1118
|||||||| |||||||||||||||||||||||||| | |||| ||| |||||||||||||
Sbjct 825 TGGCGGTCGACTTCAGACCTTTGAACCATCTGCCTACTCTCATAACCTCTGTCTTTGTGG 884
Query 1119 AACTCCCCTTAAGGCTTGTT 1138
||||| |||||||||||||
Sbjct 885 GACTCCGCTTAAGGCTTGTT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5