BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12150.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478575 jgi|Araly1|478575|fgenesh2_kg.3__1276__AT3G12150.1 1766 0.0
> Ahg478575 jgi|Araly1|478575|fgenesh2_kg.3__1276__AT3G12150.1
Length=1498
Score = 1766 bits (956), Expect = 0.0
Identities = 1044/1088 (96%), Gaps = 0/1088 (0%)
Strand=Plus/Plus
Query 284 GAACAATGGTGACGACCAAATTGGGAATGCTCCATTATGTAATTGACCATATATATGGAG 343
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 192 GAACAATGGTGTCGATCAAATTGGGAATGCTCCATTATGTAATTGACCATGTATATGGAG 251
Query 344 CGTTTATGCACCGCACCAAGATGACCCCACCCTTCTTCTCTCGAGGTTGGGGTGGTCCCA 403
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 252 CGTTTATGCACCGCACCAAGATAACCCCACCCTTCTTCTCTCGAGGATGGGGTGGTCCGA 311
Query 404 ATCTCGAATTGCTCGAGCGTATGGTTCAACGCCTCTTCCCTCTTGAGGTTCAAGGTCAGA 463
|||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 312 ATCTGGAATTGCTCGAGCGGATGGTTCAACGCCTCTTTCCGCTTGAGGTTCAAGGTCAGA 371
Query 464 ATTGGCCACCGCCTCTGGTTCGTCCAGTCTGGAGAACTGTTTGGGAGACAAAGACCGCTA 523
|||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 372 ATTGGCCACCGCCTTTGGTTCGTCCACTCTGGAGGACTGTTTGGGAGACAAAGACCGCTA 431
Query 524 CTTTGAGAGAAGGTGTTTTCCAGACTCCTTGTGCCGATGAGCTTACCGCTGCTTTGCCTC 583
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 432 CTTTGAGAGAAGGCGTTTTCCAGACTCCGTGTGCCGATGAGCTAACCGCTGCTTTGCCTC 491
Query 584 CGGAGTCTCGCACAGCCAGGGTTGCTTGGCTTGTCCCCAAAAACGTTCCTCCCCAAAAGA 643
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CGGAGTCTCGCACCGCCAGGGTTGCTTGGCTTGTCCCCAAAAACGTTCCTCCCCAAAAGA 551
Query 644 TGGCTTGTGTGGTTCATCTTGCAGGCACAGGTGATCATACATATGACCGAAGATTGCGTT 703
||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 552 TGGCTTGTGTGGTTCATCTTGCAGGTACGGGTGATCATACATATGATCGAAGATTGCGTC 611
Query 704 TGGGTGGACCGTTGGTGAAACAAAACATTGCAACAATGGTGTTGGAAAGCCCTTTCTATG 763
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TAGGTGGACCGTTGGTGAAACAAAACATTGCAACAATGGTGTTGGAAAGCCCTTTCTATG 671
Query 764 GCCAAAGGCGTCCCTTTCTTCAATGCGGTGCGAGACTCCTCTGTGTTAGTGATCTACTTT 823
||||||||||||| ||||||||| | ||||| ||||||||||||||||||||| ||||||
Sbjct 672 GCCAAAGGCGTCCGTTTCTTCAACGTGGTGCAAGACTCCTCTGTGTTAGTGATTTACTTT 731
Query 824 TGCTAGGGAGGGCAACAATCGAAGAGTCCCGCAGTCTTATTCACTGGCTAGACACTGAGG 883
| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 732 TACTAGGGAGGGCAACGATTGAAGAGTCTCGCAGTCTTATTCACTGGCTAGACACTGAGG 791
Query 884 AAGGCTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGGGAGGAGTACATGCTTCGATGG 943
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 792 AAGGCTTTGGAAAGATGGGTGTTTGTGGGCTTAGTATGGGAGGAGTACATGCTTCGATGG 851
Query 944 TTGGATCGCTTCATCCAACACCAGTTGCAACACTTCCATTCCTATCTCCGCACTCTGCTG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TTGGATCGCTTCATCCAACACCAGTTGCAACACTTCCATTCCTATCTCCGCACTCTGCTG 911
Query 1004 TTGTTGCATTCTGCGAAGGAATATTAAAGTATGGGACTGCTTGGGAGGCACTGAGGGAGG 1063
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 912 TTGTTGCATTCTGCGAAGGAATATTAAAGTATGGAACCGCTTGGGAAGCACTGAGGGAGG 971
Query 1064 AACTTGCAGCACAGAAGATCACAATGACTCTTGATGAAGTGAGAGAGCGGATGCGGAATG 1123
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 972 AACTTGCAGCACAGAAGATCACAATGAGTCTTGATGAAGTGAGAGAGCGGATGCGAAATG 1031
Query 1124 TTCTCTCCCTCACAGACGTCACTCGCTTCCCTATTCCCAAAAACCCTGATGCTGTTATCT 1183
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1032 TTCTCTCCCTCACAGATGTCACTCGCTTCCCTATCCCCAAAAACCCTGATGCTGTTATCT 1091
Query 1184 TTGTTGCTGCAACTGATGATGGATACATACCAAAACACTCAGTGTTGGAGCTTCAAAAGG 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TTGTTGCTGCAACTGATGATGGATACATACCAAAACACTCAGTGTTGGAGCTTCAAAAGG 1151
Query 1244 CGTGGCCTGGTTCAGAAGTGAGATGGGTCACAGGTGGACACGTGTCTTCCTTTATACTTC 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1152 CGTGGCCTGGTTCAGAAGTGAGATGGGTCACAGGTGGACACGTGTCTTCCTTTCTGCTTC 1211
Query 1304 ACAATGATGAGTTTCGCAGAGCAATCGTGGACGGTCTCGATAGATTAGACTGGAAGGAGT 1363
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1212 ACAACGATGAGTTTCGCAGAGCAATCGTGGACGGTCTCGATAGAGTAGAGTGGAAGGAGT 1271
Query 1364 CATGGTGA 1371
||||||||
Sbjct 1272 CATGGTGA 1279
Score = 276 bits (149), Expect = 4e-73
Identities = 181/196 (92%), Gaps = 3/196 (2%)
Strand=Plus/Plus
Query 1423 ATGTAAATGTCTTAATCTCCTCTTGTTGTATCATTTGTG-TATGTTAGGAATAAGATTCT 1481
||||||||||||||||||| ||||||||||||||||||| | | ||| ||||||||||||
Sbjct 1280 ATGTAAATGTCTTAATCTCTTCTTGTTGTATCATTTGTGTTGTTTTAAGAATAAGATTCT 1339
Query 1482 TTGCGCTTTCAAAAGTGGTGGGCTCTGATATTTATTTGTC-TTGTGTTGTTTTTGTCCCA 1540
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 1340 TTGCGCTTTCAAAAGTGGTGGGCTCTGATATTCATTTGTCTTTGTATTGTTTTTGTCCCA 1399
Query 1541 ACACATAGCAACCATTTTAGGGGTTTTCGCTCATTACATTCCATTAATATGTCATATACA 1600
|||||||||||| ||||||| ||| | | |||||||||||| ||||||||||||||||||
Sbjct 1400 ACACATAGCAACAATTTTAGAGGTATCCACTCATTACATTCGATTAATATGTCATATACA 1459
Query 1601 TTGGATCTTTAACATT 1616
||||| ||||||||||
Sbjct 1460 TTGGA-CTTTAACATT 1474
Score = 222 bits (120), Expect = 6e-57
Identities = 171/194 (88%), Gaps = 9/194 (5%)
Strand=Plus/Plus
Query 51 TCTTATTCTTCTTAGATTTCTCCATCGATCTCGAACAAAGGATTCACCTTTGCATTCATA 110
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1 TCTTCTTCTTCTTAGATTTCTCCATCGATCTTGAACAAAGCATTCACCTTTGCATTCATA 60
Query 111 TTCTTTA-TCTTGACTTCAAAGTCAA----ACCT-CCGATTCGATAAA-CAAATTGGGGA 163
||| ||| |||||||||| ||||||| | || |||||| ||| |||| |||| |
Sbjct 61 TTC-TTATTCTTGACTTCCAAGTCAATTTTTTTTCCCAATTCGA-AAATCAAACTGGGTA 118
Query 164 ATGGATGCTTGCTTTCGTCTTTCTCACCAGATCTGAAGCACCCAAGTTCCAAATTCATAT 223
||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 119 ATGGATGATTGCGTTCGTCTTTCTCACCAGATCTGAAGAACCCAAATTCCAAATTCATAT 178
Query 224 TCGATTCACCGGCG 237
||||||||||||||
Sbjct 179 TCGATTCACCGGCG 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5