BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G12160.1

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904110 jgi|Araly1|904110|Al_scaffold_0003_1238                   1142    0.0  


> Ahg904110 jgi|Araly1|904110|Al_scaffold_0003_1238
Length=669

 Score = 1142 bits (618),  Expect = 0.0
 Identities = 652/669 (97%), Gaps = 0/669 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTG  60

Query  61   ATCGGTGATTCTGCCGTTGGCAAAACTCAGCTTCTTGCTCGGTTCGCTAGGAATGAGTTT  120
            ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   ATCGGTGATTCCGCGGTTGGCAAAACTCAGCTGCTTGCTCGGTTCGCTAGGAATGAGTTT  120

Query  121  AGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGAT  180

Query  181  AACAAAACCGTCAAAGCTCAGATTTGGGATACTGCTGGCCAAGAAAGATATAGGGCGGTG  240
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  181  AACAAAACCGTCAAAGCTCAGATTTGGGATACGGCTGGCCAAGAAAGATATAGGGCGGTG  240

Query  241  ACAAGTGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTACGACATGACCAAACGT  300
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  241  ACAAGCGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTATGACATGACCAAACGT  300

Query  301  CAATCATTCGATCACATGGCTAAATGGCTGGAAGAGTTACGAGGACATGCGGACAAGAAC  360
            |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  301  CAATCATTCGATCACATGGCGAAATGGCTGGAAGAGTTAAGAGGACATGCGGACAAGAAC  360

Query  361  ATAGTGATTATGCTAATTGGGAACAAATGTGATCTTGGAAGCCTAAGAGCAGTGCCAACA  420
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  361  ATAGTGATTATGCTAATTGGGAACAAGTGTGATCTTGGAAGCCTAAGAGCAGTGCCAACA  420

Query  421  GAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTA  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  421  GAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTT  480

Query  481  GAAGCTACCAATGTTGAAACAGCATTTTTGACCATCTTAACAGAGATCTACCGAATAATC  540
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct  481  GAAGCTACCAATGTTGAAACAGCTTTTTTGACCATCTTAACAGAGATTTACCGTATAATC  540

Query  541  AGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAA  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  AGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAA  600

Query  601  GGAACTAGAATCATCATCCCGAGCGAGCAAGAGAGTGGGAAAAGAGGTGGATGTTGCGGC  660
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  601  GGAACTAGAATTATCATCCCGAGCGAGCAGGAGAGTGGGAAAAGAGGTGGATGTTGCGGT  660

Query  661  AAATCGTAA  669
            ||||| |||
Sbjct  661  AAATCATAA  669



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24551158548


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5