BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12170.1
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317998 jgi|Araly1|317998|fgenesh1_pm.C_scaffold_3001014 1258 0.0
> Ahg317998 jgi|Araly1|317998|fgenesh1_pm.C_scaffold_3001014
Length=789
Score = 1258 bits (681), Expect = 0.0
Identities = 753/789 (95%), Gaps = 0/789 (0%)
Strand=Plus/Plus
Query 22 ATGGAGAATGATGGAAGATCCAATGAGAAAAATCTGTACGAGGTTCTTGGTGTTGAAGCA 81
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAATGATGGAAGATCCAGCGAGAAAAATCTTTACGAGGTTCTTGGTGTTGAAGCA 60
Query 82 ACAGCATCTCCACAAGAGATAAGGAAAGCGTATCATAAGTTAGCATTGAGGCTTCATCCT 141
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 ACAGCATCTCCACAGGAGATAAGGAAAGCGTATCATAAGTTAGCATTGAGACTTCATCCT 120
Query 142 GATAAAAACAAGGATGATGAGGATGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATT 201
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GATAAAAACAAGGACGATGAGGAAGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATT 180
Query 202 TCGATTCTCGGTGATGAAGAGAAAAGAGCAGTCTATGATCAAACTGGCTCAGTTGATGAT 261
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 TCGATTCTCGGTGATGAAGAGAAAAGAGCGGTATATGATCAAACTGGCTCAGTTGATGAT 240
Query 262 GCTGATCTTTCGGGAGATGTGGTTGACAACTTGAGGGACTTCTTCAAGGCAATGTACAAG 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGATCTTTCGGGAGATGTGGTTGACAACTTGAGGGACTTCTTCAAGGCAATGTACAAG 300
Query 322 AAGGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAG 381
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAGGTCACGGAGGAAGATATTGAAGAGTTTGAGGCCAACTACAGGGGTTCTGAATCCGAG 360
Query 382 AAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAATGAGCAGGCTTTTCTGC 441
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 361 AAGAATGATTTGATTGAGCTATATAAGAAGTTTAAGGGTAAAATGAACAGGCTTTTCTGC 420
Query 442 TCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAG 501
|||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||
Sbjct 421 TCAATGCTTTGCTCAAACCCCAAGCTTGATTCACACCGTTTCAAAGATCTTATTGATGAG 480
Query 502 GCCATTGCAGCGGGAGAAGTGAAATCAACAAAAGCTTACAAGAAATGGGCAAAGGAGATT 561
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 481 GCCATTGCAGCTGGAGAAGTGAAATCAACAAAAGCTTACAAGAAATGGGCGAAGGAAATT 540
Query 562 GCAGAAATGGAACCTCCCACGAATCCCCAGAAGATGAGACGGAAAGCAGCAAAGGCTGCA 621
||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||
Sbjct 541 TCAGAAATGGAACCTCCCACGAATCCTCAGAAGATGAGACAGAAAGCAACAAAGGGTGCA 600
Query 622 GATAAAGATTTATACGCTGTAATGTCCCAGCGGGGAGATGAGAGGAAAGAGAAGTTCGAT 681
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 601 GATAAAGATTTATACGCTGTAATTTCGCAGCGAAGAGATGAGAGGAAAGAGAAGTTCGAT 660
Query 682 TCAATGTTCTCTTCACTTGTCTCTAGGTATGGTAGCAATGCTGACTCTGAGCCAAACGAA 741
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 661 TCAATGTTCTCGTCACTTGTGTCTAGGTATGGTAGCAATGCTGACTCTGAGCCAAATGAA 720
Query 742 GAAGAGTTCGAAGCTGCTCAGAGAAAAGTTGAAAGCCGGAGATCATCGAAGAAGTCTAGa 801
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GAAGAATTCGAAGCTGCACAGAGAAAAGTTGAAAGCCGGAGATCATCGAAGAAGTCGAGA 780
Query 802 aaaaaaTAA 810
||||| |||
Sbjct 781 AAAAAGTAA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5