BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G12180.1

Length=778
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317999 jgi|Araly1|317999|fgenesh1_pm.C_scaffold_3001015           749    0.0  


> Ahg317999 jgi|Araly1|317999|fgenesh1_pm.C_scaffold_3001015
Length=441

 Score =  749 bits (405),  Expect = 0.0
 Identities = 429/441 (97%), Gaps = 0/441 (0%)
 Strand=Plus/Plus

Query  103  ATGGCTTGGGATTTGTTTTTATGGATAGTCTCCTTCTTCGTTAGCTTGGCTCTCGTCGCT  162
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTTGGGATTTGTTTTTATGGATAATCTCCTTCTTCGTTAGCTTGGCTCTCGTCGCT  60

Query  163  TCCGTCTTCTACCAGGTTATCTGCTTAACGGATTTAGAAGCTGATTACTTGAACCCTTTT  222
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCCGTCTTCTATCAGGTTATCTGCTTAACGGATTTAGAAGCTGATTACTTGAACCCTTTT  120

Query  223  GAAACAAGTACCCGTATCAACCGATTAGTAATACCTGAGTTTATCCTCCAAGGGTCACTC  282
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  GAAACAAGTACCCGTATCAACCGATTAGTTATACCTGAGTTTATCCTCCAAGGGTCACTC  180

Query  283  TGCCTTCTCTTCCTCCTCACATGGCATTGGGTCTTCTTTCTGGTCGCCGTCCCTGTAACA  342
            ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct  181  TGCCTTCTCTTCCTCCTCACATGGCATTGGGTCTTTTTTCTGGTCGCCATCCCTGTAACA  240

Query  343  GTCTATCACGCAATGTTATACAAAGAGCGACGTTATCTCATCGATGTCACTGAAGTGTTC  402
            ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCTATCACGCAATGTTATTCAATGAGCGACGTTATCTCATCGATGTCACTGAAGTGTTC  300

Query  403  CGTGGTATCAGCTTTGAAAAGAAGCTCCGGTATACCAAGCTCGGGTTCTACGTCTTTCTC  462
            |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct  301  CGTGGTATTAGCTTTGAAAAGAAGTTCCGGTTTACCAAGCTCGGGTTCTACGTCTTTCTC  360

Query  463  TTCATCATGGTTGTCTTTAGGCTCACTCTCTCTGCGGTCTATAGCTTCACGGAAGATGAT  522
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  361  TTCATCATGGTTGTCTTTAGGCTCACTCTCTCGGCGGTCTATAGCTTCACGGAAGACGAT  420

Query  523  GATCTACTTCATTTGTTTTGA  543
            |||||||||||||||||||||
Sbjct  421  GATCTACTTCATTTGTTTTGA  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28706556501


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5