BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12200.2
Length=2261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478579 jgi|Araly1|478579|fgenesh2_kg.3__1280__AT3G12200.1 2444 0.0
Ahg949038 jgi|Araly1|949038|scaffold_800925.1 69.4 1e-10
> Ahg478579 jgi|Araly1|478579|fgenesh2_kg.3__1280__AT3G12200.1
Length=2107
Score = 2444 bits (1323), Expect = 0.0
Identities = 1503/1590 (95%), Gaps = 11/1590 (1%)
Strand=Plus/Plus
Query 678 GATGAAATTGCTCTCAAGCTTAAAGAATCCTTATATCGTGCATTATGAAGATTCTTGGAT 737
|||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 406 GATGAAGTTGCTCTCAAATTTAAAGAATCCTTATATCATGCATTATGAAGATTCTTGGAT 465
Query 738 TGACAATGACAATAATGCCTGCATTTTTACTGCTTACTATGAGGGAGGGAACATGGCTAA 797
|||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 466 TGACAAGGACAATAACGCCTGCATTTTTACTGCTTACTGTGAGGGAGGGAACATGGCTAC 525
Query 798 TGCTATTAAGAAAGCGAGAGGAAAATTATTCCCGGAGGAAAGAATCTTTAAATGGTTGGC 857
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 526 TGCTATTAAGAAAGCGAGAGGAAAGTTATTTCCAGAGGAAAGAATCTTTAAATGGTTGGC 585
Query 858 ACAATTGTTACTGGCTGTTAACTATTTGCACTCAAACCGTGTAGTTCACATGGATCTAAC 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 ACAATTGTTACTGGCTGTTAACTATTTGCACTCAAACCGTGTAGTTCACATGGATCTAAC 645
Query 918 GTGTTCAAATATTTTCCTGCCGAAAGATGATCACGTCCAGCTTGGTAATTATGGTCTGGC 977
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GTGCTCAAATATTTTCCTTCCGAAAGATGATCACGTCCAGCTTGGTAATTATGGTCTGGC 705
Query 978 GAAACTTATAAATCCAGAAAAGCCTGTTTCCATGGTTTCGGGTATCTCTAACAGCATGTG 1037
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 706 GAAACTTATAAATCCAGAAAAGCCAGTTTCCATGGTTTCGGGTATCTCTAACAGCATGTG 765
Query 1038 CCCTGAGGTATTAGAAGATCAACCATATGGATATAAATCTGACATATGGTCGCTGGGTTG 1097
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 766 CCCTGAGGTATTAGAAGATCAACCATATGGATATAAATCTGACATATGGTCGTTGGGTTG 825
Query 1098 TTGTATGTATGAAATTACAGCACACCAGCCTGCGTTTAAAGCTCCGGATATGGCTGGACT 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 826 TTGTATGTATGAAATTACAGCACACCAGCCTGCGTTTAAAGCTCCGGATATGGCAGGACT 885
Query 1158 CATCAATAAAATAAACAGATCCCTTATGTCTCCTCTTCCGATCGTCTACTCCTCTACCTT 1217
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 886 CATCAACAAAATAAACAGATCCCTTATGTCTCCTCTTCCGATTGTCTACTCATCTACCTT 945
Query 1218 GAAACAAATGATAAAGCTTATGCTTAGGAAGAAACCAGAATATCGGCCAACAGCCTGCGA 1277
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 946 GAAACAAATGATAAAGCTTATGCTTAGGAAGAAACCAGAATATAGGCCAACAGCCTGCGA 1005
Query 1278 ATTGTTAAGAAACCCATCTCTACAACCATACCTTCTTCAATGCCAAAACCTGTCGCCTAT 1337
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ATTGTTAAGAAACCCATGTCTACAACCATACCTTCTTCAATGCCAAAACCTGTCGCCTAT 1065
Query 1338 TTATCTTCCGGTTTTCCCGATAAAGCCGGTAAATAGTCCGAAGGATAAAGCAAGAAGAAA 1397
||| ||||| |||||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct 1066 TTACCTTCCTGTTTTCCCAATAAAGTCGGTAAATAGCCCAAAGGATAAAGCAAGAAGAAA 1125
Query 1398 CTCATTGCCAGGAAAGTTTGGAAAGGAAAGAGTTTCAAGAGAGAAGAGCGAGGTGTCCCG 1457
|||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 1126 CTCATTGCCAGGAAAGTTTGTTAAGGAAAGAGATTCGAGAGAGAAGAGCGAGGTGTCCCG 1185
Query 1458 CAGTTTGGAAAATCTATATCCATTTTGGACGAATACAGAGACTGGATCTAGCAGCTCATC 1517
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1186 CAGTTTGGAAAATCTATATCCATTTTGGACGAATGCAGAGACTGGATCTAGCAGCTCATC 1245
Query 1518 GCAACCGGCATCATCTACGAATGGCGCAGAAGACAAACTTGAAACAAAAAGAATCGATCC 1577
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1246 GCAACCGGCATCATCCACAAATGGTGCAGAAGACAAACTTGAAACAAAAAGAATCGATCC 1305
Query 1578 AAGCTGTGACACATTGAAGATTTCTGAGTTTACAAGCCAGAAGTCGGATGAGAGCTTAAT 1637
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1306 AAGCTGCGACACATTGAAGATTTCTGAGTTTACTAGCCATAAGTCGGATGAGAGCTTAAT 1365
Query 1638 TGATCCTGATATTGCAGTTTACTCTACAGAAACGCCAGCCGAAGAAAATGCTCTGCCAAA 1697
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1366 TGATCCTGATATTGCAGTTTACTCTACAGAAAAGCAAGCCGAAGAAAATGCTCTGCCAAA 1425
Query 1698 AGAAACTGAAAATATATTCTCTGAGGAATCTCAGTTACGTGATGTTGATGTTGGGGTTGT 1757
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 AGAAACTGAAAATATGTTCTCTGAGGAATCTCAGTTACGTGATGTTGATGTTGGGGTTGT 1485
Query 1758 GAGTGCACAAGAAGTAGCATGTTCCCCTCCAAGAGCCATCGAAGAAGCTGAAACTCAGGA 1817
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1486 GAGTGCACAAGAAGTAGTATGTTCCCCTCCAAAAGCCATCGAAGAAGCTGAAACTCAGGA 1545
Query 1818 GGC-ATTACCTAAACCAAAGGAACAGATAACAGTGCCCATTTCTAGTGTTGCACATTCAT 1876
|| ||||||| ||||||||||||| | ||| || ||||||| || ||| | |||||
Sbjct 1546 -GCTATTACCTGAACCAAAGGAACATAGAACGGTTTCCATTTCCAGCACTGCGCCTTCAT 1604
Query 1877 CTACTGAAGTTGCAGCAGCA--AA-AGACCATTTGTCTGGAAGCCTTGAGGGCGATAAAG 1933
|||||||| ||||||||||| || ||||| ||||||||||||||| ||||| ||| |||
Sbjct 1605 CTACTGAAATTGCAGCAGCAGCAAGAGACCGTTTGTCTGGAAGCCTCGAGGGAGATGAAG 1664
Query 1934 CAAAGATGGTGAAACTAACAGCGAGTGAAATGTCATCGGTACTAAGTAAGCTCACAAAAT 1993
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1665 TAAAGACGGTAAAACTAACAGCGAGTGAAATGTCATCGGTACTGAGTAAGCTCACAAAAC 1724
Query 1994 TGGGTCCGCCGCAGAGTAAAGAAAGGGCAGATGCATTAGAGTGTTTATTGGAGAAATGTG 2053
|||| || |||||||||||||||||||||||||| || |||||||| || ||||||||||
Sbjct 1725 TGGGCCCACCGCAGAGTAAAGAAAGGGCAGATGCGTTGGAGTGTTTGTTAGAGAAATGTG 1784
Query 2054 CAGGGCTTGTAAAGCAAGAGAAATATGAAGAACTTGCTGGTTTGCTTACACCATTTGGGG 2113
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 CAGGGCTTGTTAAGCAAGAAAAATATGAAGAACTTGCTGGTTTGCTTACACCATTTGGGG 1844
Query 2114 AAGATGGTGTCTCGGCTAGGGACACTGCAATTTGGTTCGCAAAGACACTCTTGTCGTCTG 2173
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1845 AAGATGGTGTCTCGGCTAGGGACACTGCAATTTGGTTCGCAAAGACACTCTTGTCTTCTG 1904
Query 2174 ACAAACTCAACCAAGGAACCTGATTGAGTTAGAGACAAATTTCCCTTTTTGGTT-TTTGT 2232
| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 1905 AGAAACTCAACCAAGGAACCTGATTGAGTTTGAGA-AAATTTCCCTTTTTGGTTATTTGT 1963
Query 2233 CAAATATGTaaaaaaaTTC-TTTTATCATC 2261
|||||||||||||| ||| |||| |||||
Sbjct 1964 CAAATATGTAAAAA--TTCCTTTT-TCATC 1990
Score = 348 bits (188), Expect = 1e-94
Identities = 237/260 (91%), Gaps = 6/260 (2%)
Strand=Plus/Plus
Query 391 TGAAATTGGGTTTCTGTAGCtttttttCTCCGGGAAAGGtttttcttttttGAAGATTTC 450
||||| |||||| |||||||||| |||||||||| ||| ||||||||||| |||
Sbjct 155 TGAAACTGGGTTCCTGTAGCTTTGTTTCTCCGGG--AGG----GGTTTTTTGAAGAATTC 208
Query 451 ATGCAAATGGAGGCTAATGACTGTCAAGAGGAACATAAGTTCACTCTCGACAACTATCAT 510
|||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct 209 ATGCAAATGGAGGCTAATGACTGTGAAGAAGAACACAAGTTCACTCTCGACAACTATCAT 268
Query 511 GTCGTGGAGCAGGTTAGAAGAGGCAAGTCCTCTTCCGATTTCGTGGTTCTTCATGATATT 570
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 269 GTCGTGGAGCAGGTTAGAAGAGGCAAGTCCTCTTCCGATTTCTTGGTTCTTCATCAAATT 328
Query 571 GAAGACAAAAAGTATGCAATGAAGAAGATTTGCCTAGCGAAACACACGGACAAGTTAAAG 630
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 329 GAAGACAAAAAGTATGCAATGAAGAAGATTTGCCTGGCTAAACACACCGACAAGTTAAAG 388
Query 631 CAAACCGCTTTACAAGAGAT 650
| ||||||||| ||||||||
Sbjct 389 CTAACCGCTTTCCAAGAGAT 408
Score = 156 bits (84), Expect = 8e-37
Identities = 138/162 (85%), Gaps = 12/162 (7%)
Strand=Plus/Plus
Query 184 aaaaaaaGAATCCAATGACATAAATAAAAGTCTTGATAGGTGGGCGATTTCAACATACCT 243
||||| ||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 1 AAAAATAGAATCCAATGAC---CAT-AAAGTCTTGATAGGTGGGCGATTTCAACAT-CC- 54
Query 244 CC-TCCGT-CGTCGTCGGCTTCCATTGATTTTGGCACTACTACAAGAGACTTACGTTCTT 301
|| ||| | |||||||||||||||||||||||| |||||||||||| | ||| || | |
Sbjct 55 CCTTCC-TCCGTCGTCGGCTTCCATTGATTTTGACACTACTACAAGCGTTTTATGTCCGT 113
Query 302 CTTCATTATCTTCTTCT-CT-TT-CTGAAACCCTAAGATTTT 340
||| ||| ||||||||| || || ||||||||| ||||||||
Sbjct 114 CTTGATTGTCTTCTTCTTCTCTTTCTGAAACCCGAAGATTTT 155
> Ahg949038 jgi|Araly1|949038|scaffold_800925.1
Length=349
Score = 69.4 bits (37), Expect = 1e-10
Identities = 45/49 (92%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 786 GAACATGGCTAATGCTATTAAGAAAGCGAGAGGAAAATTATTCCCGGAG 834
||||| |||||||||||||||||||||||||||||| ||||| || |||
Sbjct 272 GAACAGGGCTAATGCTATTAAGAAAGCGAGAGGAAAGTTATTTCCAGAG 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85131697575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5