BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12210.2
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478581 jgi|Araly1|478581|fgenesh2_kg.3__1282__AT3G12210.2 1075 0.0
> Ahg478581 jgi|Araly1|478581|fgenesh2_kg.3__1282__AT3G12210.2
Length=690
Score = 1075 bits (582), Expect = 0.0
Identities = 654/690 (95%), Gaps = 0/690 (0%)
Strand=Plus/Plus
Query 66 ATGGAACTAGAGTTCAAGTGTTCCGATGTTGGAGTATGGAAGGAGGCTCTGTCTTCGTAC 125
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGGAACTAGACTTCAAGTGTTCCGATGTTGGAGTTTGGAAGGAGGCTCTGTCTTCCTAC 60
Query 126 GATTCCCGAATCGAATCACTGAACAAACCAGAACTCGTCTCTCTCGACCAATTCTACCGC 185
|| ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct 61 GAATCCCGAATCGAGTCACTCAACAAACCAGACCTCGTCTCTCTCGATCAATTTTACCGC 120
Query 186 ATCAAACTCCCTTGTCTTCTTCACGACCGAGACCCTAACCCTTACCTCACTACTTCCGAG 245
| |||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||||
Sbjct 121 GTAAAACTCCCTTCTCTTCTTCACGACCGAGATCCTGACCCTTACCTCACCACCTCCGAG 180
Query 246 CTTTCTCAACTCATGAAATGGAAGCTCTCTCGTGGAAAATGGCGGCCGCGTCTGCTGGAC 305
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CTTTCTCAACTCATGAAATGGAAGCTCTCTCGTGGCAAATGGCGGCCGCGTCTGCTGGAT 240
Query 306 TTCGTGTCGTCTCTAGACGATTCAGTGGTGAAATCTGCTTCTGAGAAAGCTTTTAAATCG 365
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TTCGTGTCGTCTCTAGAAGATTCAGTGGTGAAATCTGCTTCTGAGAAAGCTTTCAAATCG 300
Query 366 CTTCCTGACATCTCCAAGGCTGTGAAAGAGCTCACTGTGCTTAAGGGCGTTGGTGCTGCC 425
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 301 CTTCCTGACATTTCCAAGGCTGTGAAAGAGCTCACTGTGCTTAAGGGCGTTGGTCCGGCC 360
Query 426 ACCGCATCCGCCGTTCTTGCTGCTTACGCCCCTGACATTGCACCATTTATGTCCGACGAG 485
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTGCCTCCGCCGTTCTGGCTGCTTACGCCCCTGACATTGCACCATTTATGTCCGACGAG 420
Query 486 GCAATGGAGGTGGCTCTTGGGAACTCAAAGGATTACTCTTTGAAACAATACTTGTTGTTT 545
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GCAATGGAGGTGGCTCTCGGGAACTCAAAGGATTACTCTTTGAAGCAATACTTGTTGTTT 480
Query 546 GCAACTAAGCTACAAGATAAAGCAAAGGAATTAAAGTTGAAGGGAGAGTGGGATGGGCCT 605
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GTAACTAAGCTACAAGATAAAGCCAAGGAATTAAAGTTGAAGGGAGAGTGGGATGGGCCT 540
Query 606 TCAGATATTGAAAGAGCTCTATGGAGTTGTACTGTGCGTGCAAAGTCACAGCCAGAGAAG 665
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TCAGATGTTGAAAGAGCTCTATGGAGTTGTACTGTGAGTGCAAAGTCACAGCCAGAGAAG 600
Query 666 AGCTCTTCCGGGAAGAAAAGAAAACGGTAGGTGATAATATTTCTATCCAGTTCACCTTCC 725
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 601 AGCTCTTCCGGGAAGAAAAGAAAACGGTAGGTGATAATATTTCTATCTAATTCACCTTCT 660
Query 726 ATCCATTTTTAAGATCAACCATATGTCAGC 755
||||||| ||||||||||||||||||||||
Sbjct 661 ATCCATTGTTAAGATCAACCATATGTCAGC 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5