BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12220.1
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928947 jgi|Araly1|928947|scaffold_301404.1 1493 0.0
Ahg478582 jgi|Araly1|478582|fgenesh2_kg.3__1283__AT3G12220.1 1439 0.0
Ahg481165 jgi|Araly1|481165|fgenesh2_kg.4__225__AT2G22980.2 553 1e-156
Ahg932263 jgi|Araly1|932263|scaffold_400251.1 477 9e-134
> Ahg928947 jgi|Araly1|928947|scaffold_301404.1
Length=1350
Score = 1493 bits (808), Expect = 0.0
Identities = 1159/1328 (87%), Gaps = 26/1328 (2%)
Strand=Plus/Plus
Query 98 AAAAAGAATGGGTTCATGGATACCCAAGTTGCTGCTGCTGCAACTTGTGCTTCTGTTGAC 157
||||||||||| ||| |||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 14 AAAAAGAATGGCTTCCTGGATATTCAAGTTGCTGCTGCTGCAATTTGTGCTTGTGTTGAT 73
Query 158 T-AAGCATGCTGATTCAAGTTCTATCATCAAATATCTTCCTGGTTTTGAAGGCCCTCTTC 216
| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 74 TCAA-CATGCTGATTCAGGTTCTATCATCAGATATCTTCCTGGTTTTGAAGGCCCTCTTC 132
Query 217 CCTTCGAGCTCGAAACCGGGTACATTGGTGTTGGTGAGGAAGATGAAGATCAAATGTTCT 276
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 133 CCTTCGAGCTTGAAACCGGGTACATTGGTGTTGGTGAGGAAGATGAAGATCAAATGTTTT 192
Query 277 ACTACTTCATCAAATCTGAGAGCAATCCA-AAAACAGACCCTCTTCTTCTCTGGCTAAGT 335
||||||||||||||||||||||||||||| | | ||||||||||||| ||||| |||
Sbjct 193 ACTACTTCATCAAATCTGAGAGCAATCCAGATGA-AGACCCTCTTCTTGTCTGGTTAACA 251
Query 336 GGAGGACCTGGTTGCTCTTCTTTCACTGGTCTTATATATGAGAACGGGCCACTTGGTTTC 395
||||||||||| |||||||||||| |||||||| | |||||||| ||||| |||| ||||
Sbjct 252 GGAGGACCTGGCTGCTCTTCTTTCTCTGGTCTTGTTTATGAGAATGGGCCTCTTGCTTTC 311
Query 396 AAGGTTGAGGCGTACAATGGAAGTATCCCCACGTTGGTCTCTACTACATATTCATGGACA 455
||||||||| | |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 312 AAGGTTGAGACTTACAATGGAAGTATACCAACGTTGGTTTCTACTACATATTCATGGACT 371
Query 456 AAGGTTGCGAATATAATCTATTTAGATCAACCTGTTGGGACTGGCTTCTCCTACTCAAGA 515
||||| || || ||||| ||||| || || |||||||||||||||||||||||| ||| |
Sbjct 372 AAGGTGGCCAACATAATATATTTGGACCAGCCTGTTGGGACTGGCTTCTCCTACGCAAAA 431
Query 516 AATCCACTTGCTGATATACCAAGTGACACAGGATCAGCTAAGCGGGTCGATGAGTTTCTT 575
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 432 AATCCACTTGCTGATATACCAAGTGACACAGGATCAGCTAAGCGGGTCAACGAGTTTGTT 491
Query 576 CGTAAATGGCTAACCAAGCATCCTGAGTATTTCTCCAACCCTTTCTATGCCGGTGGAAAT 635
||||| ||||| | ||||||||||| ||||||||||| |||||||||| | ||||||
Sbjct 492 CGTAAGTGGCTTGCTAAGCATCCTGATTATTTCTCCAATCCTTTCTATGTCACCGGAAAT 551
Query 636 TCTTATTCCGGTAAGATGGTTCCGGTCATCGTTCAAGAAATCTCAAATGGAAATTGTATT 695
||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |||
Sbjct 552 TCTTATTCCGGTAAGGTGATTCCGGCCATCGTTCAAGAAATCTCAAATGGAAATTATATA 611
Query 696 TACGGCAAACCTCAAATAAGGCTTCAGGGCTATGTGCTCGGAAGTCCGGTAACAGACT-A 754
| | ||||||||||||||| ||||||||||||||| | |||| ||||||||||||| |
Sbjct 612 TGCTGCAAACCTCAAATAAATCTTCAGGGCTATGTGATTGGAAACCCGGTAACAGACTCA 671
Query 755 TGATCTTGATAGAA-ATTCTCGTATTCAATTTGCTCATGGAATGGCACTT-ATCTCTAAT 812
| || ||||| || | ||||| |||| ||||||||||||||||||| || |||||| ||
Sbjct 672 -GCTCATGATA-AAGACTCTCGCATTCCATTTGCTCATGGAATGGCA-TTGATCTCTGAT 728
Query 813 GAACTCTATGAGTCGATGAAGAGAA-CTTGTGGAGGAAACTATATTTTTGTAGATCCTCT 871
||||| | ||||||||||||||||| || || ||||| ||||| | |||||||||||||
Sbjct 729 GAACTATTTGAGTCGATGAAGAGAAGCT-GTAAAGGAAGCTATAGTATTGTAGATCCTCT 787
Query 872 TAACACAGAATGCTTGGAACTCATAAAAGACTATGACAACTGTGTTTCTGGAATATATGA 931
||| |||||||||||| ||||| | |||| ||| |||| ||||||||||||||||||||
Sbjct 788 TAATACAGAATGCTTGAAACTCGTTGAAGATTATCACAAGTGTGTTTCTGGAATATATGA 847
Query 932 A-AATCTTATCCTCGTACCAAAATGTGAC-CTTACATCTCCTGATTGCCATTCGTATCGG 989
| || ||||| || |||| ||||||| || |||||||||||||| || ||||||||
Sbjct 848 AGAA-CTTATTCTTAAACCACAATGTGAGACT-ACATCTCCTGATTGTTATACGTATCGG 905
Query 990 TCTATGCTATCCGATTACTGGGCTAATAACGAGAGCGTACGCAGAGCACTTAAAGTTGTG 1049
| | ||||||| || || |||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 906 TATTTGCTATCTGAATATTGGGCTAATAACGAGAGCGTCCGCAGAGCACTCAAAATTGTC 965
Query 1050 GAGGGTACTACAGGTAGATGGGAACGATGTAAATGGACTTTGCAAAACAATAAAGACATT 1109
|||| |||| ||| | ||||||||||||| | |||| | ||| |||||||||||||
Sbjct 966 AAGGGGACTAAAGGGAAATGGGAACGATGTGATTGGAGTGTGCTTTGCAATAAAGACATT 1025
Query 1110 AAAAGCAGCATACCATACCATAAGAAGAACAGCATCCAAGGCTATCGATCTCTTA-TC-T 1167
|||||||||||||| ||||||| | | ||||||||| |||||||||||||||| | || |
Sbjct 1026 AAAAGCAGCATACCGTACCATATGTATAACAGCATCAAAGGCTATCGATCTCT-AGTCAT 1084
Query 1168 TCAGTGGTGATCACGACATG-CTAA-CACCTTACGTTGGAACTCAAG-ACTGGATAAGAT 1224
| || ||||||||||| || | || | |||| |||||||||||||| | ||||||||||
Sbjct 1085 T-AGCGGTGATCACGATTTGAC-AATC-CCTTTCGTTGGAACTCAAGCA-TGGATAAGAT 1140
Query 1225 CTCTCAACTATTCCATTATTGACAAATGGAGGCCATGGATGATACTTGATCAAGTCGCTG 1284
|||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 1141 CTCTCAACTATTCCATTACTGAAAAATGGAGGCCATGGATGATACTCGATCAAGTCGCCG 1200
Query 1285 GATACACTACGACTTACGCTAATAAGATGACATTTGCTACTGTGAAAGGTGGCGGGCACA 1344
||||||| | |||||| || ||||||||||||||||| ||||||||||| || |||||||
Sbjct 1201 GATACACCAAGACTTATGCCAATAAGATGACATTTGCCACTGTGAAAGGAGGTGGGCACA 1260
Query 1345 CGTTAGACTATAAACCAGATGAGAATTCAATCTTGTTCAAGAGGTGGATAAGTGGCCAAC 1404
| || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1261 CATTGGAATATAAACCAGAGGAGAATTCAATCTTGTTCAAGAGGTGGATAAGTGGTCAAC 1320
Query 1405 TTCTTTAA 1412
|||||||
Sbjct 1321 CTCTTTAA 1328
> Ahg478582 jgi|Araly1|478582|fgenesh2_kg.3__1283__AT3G12220.1
Length=1399
Score = 1439 bits (779), Expect = 0.0
Identities = 1139/1304 (87%), Gaps = 60/1304 (5%)
Strand=Plus/Plus
Query 98 AAAAAGAATGGGTTCATGGATACCCAAGTTGCTGCTGCTGCAACTTGTGCTTCTGTTGAC 157
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 64 AAAAAGAATGGGTTCATGGATACCCAAGTTTCTGCTGCTGCAACTTGTGCTTCTGTTGAC 123
Query 158 TAAGCATGCTGATTCAAGTTCTATCATCAAATATCTTCCTGGTTTTGAAGGCCCTCTTCC 217
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 124 TAAGCATGCTGATTCAAGTTCTATCATCAGATATCTTCCTGGTTTTGAAGGCCCTCTTCC 183
Query 218 CTTCGAGCTCGAAACCGGGTACATTGGTGTTGGTGAGGAAGATGAAGATCAAATGTTCTA 277
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 184 CTTCGAGCTCGAAACCGGGTACATTGGTGTTGGTGATGAAGAGGAAGATCAAATGTTCTA 243
Query 278 CTACTTCATCAAATCTGAGAGCAATCCAAAA-ACAGACCCTCTTCTTCTCTGGCTAAGTG 336
|||||||||||||||||||||||||||| || | ||||||||||||| ||||| ||| ||
Sbjct 244 CTACTTCATCAAATCTGAGAGCAATCCAGAAGA-AGACCCTCTTCTTGTCTGGTTAACTG 302
Query 337 GAGGACCTGGTTGCTCTTCTTTCACTGGTCTTATATATGAGAACGGGCCACTTGGTTTCA 396
||||||||| |||||||||||| |||||||| | |||||||| ||||| |||| |||||
Sbjct 303 CAGGACCTGGCTGCTCTTCTTTCTCTGGTCTTGTTTATGAGAATGGGCCTCTTGCTTTCA 362
Query 397 AGGTTGAGGCGT-ACAATGGAAGTATCCCCACGTTGGTCTCTACTACATATTCATGGACA 455
||||| ||| || ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 363 AGGTTAAGG-GTTACAATGGAAGTATTCCCACGTTGGTTTCTACTACATATTCATGGACT 421
Query 456 AAGGTTGCGAATATAATCTATTTAGATCAACCTGTTGGGACTGGCTTCTCCTACTCAAGA 515
||||| || | | || ||| ||||| | | | || ||| | | | | ||
Sbjct 422 AAGGT----AACACCAGCT-TTTGGATCA---T-T-G---CTT-CTT-T--T--T-A-GA 460
Query 516 AATCCACTTGCTGATATACCAAGTGACACAGGATCAGCTAAGCGGGTCGATGAGTTTCTT 575
|||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 461 AATCCACTTGCTGATATATCAAGTGACACAGGATCAACTAAGCGGGTCGACGAGTTTCTT 520
Query 576 CGTAAATGGCTAACCAAGCATCCTGAGTATTTCTCCAACCCTTTCTATGCCGGTGGAAAT 635
| ||| | |||| ||||| |||||||||||||| |||||||| | | || |||
Sbjct 521 CCTAA--G-CTAA----GCATC--GAGTATTTCTCCAATCCTTTCTACGTCACCGGCAAT 571
Query 636 TCTTATTCCGGTAAGATGGTTCCGGTCATCGTTCAAGAAATCTCAAATGGAAATTGTATT 695
||||| ||||||||| || ||||||| |||||||||||||||||||||||||| |||||
Sbjct 572 TCTTACTCCGGTAAGTTGATTCCGGTTATCGTTCAAGAAATCTCAAATGGAAACTGTATA 631
Query 696 TACGGCAAACCTCAAATAAGGCTTCAGGGCTATGTGCTCGGAAGTCCGGTAACAGACTAT 755
| | ||||||||||||||| ||||||||||||||||||||||| ||||| ||||| | |
Sbjct 632 TGCTGCAAACCTCAAATAAATCTTCAGGGCTATGTGCTCGGAAGCCCGGTTACAGATTCT 691
Query 756 GATCTTGATAGAAATTCTCGTATTCAATTTGCTCATGGAATGGCACTTATCTCTAATGAA 815
|| ||| ||| ||| ||||| ||||||| ||||||| ||||| |||| || ||| |||||
Sbjct 692 GAACTTAATAAAAACTCTCGCATTCAATATGCTCATAGAATGTCACTCATATCTGATGAA 751
Query 816 CTCTATGAGTCGATGAAGAGAA-CTTGTGGAGGAAACTATATTTTTGTAGATCCTCTTAA 874
||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||| ||
Sbjct 752 CTCTACGAGTCGATGAAGAGAAGCT-GTGGAGGAAACTATATTATTGTAGATCCTCTAAA 810
Query 875 CACAGAATGCTTGGAACTCATAAAAGACTATGACAACTGTGTTTCTGGAATATATGAAAA 934
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 811 CACACAATGCTTGGAACTCATTAAAGACTATGACAAGTGTGTTTCTGGAATATATGAAAA 870
Query 935 TCTTATCCTCGTACCAAAATGTGACCTTACATCTCCTGATTGCCA-TTCGT-ATCGGT-C 991
|||||||||| ||||||||||||||||||||||||||||||||| || | || | | |
Sbjct 871 CCTTATCCTCGCACCAAAATGTGACCTTACATCTCCTGATTGCCAATTTGCCAT-GTTGC 929
Query 992 TATG-CTA-TCCGATTACTGGG-CTAATAACGAGAGCGTACGCAGAGC-ACTTAAAGTTG 1047
|||| | | || | | | | || ||| | | | || | | | || | | || | |
Sbjct 930 TATGGC-AGTC-G-T-A-TCGGTCTA-TG-CTATC-CGAATACTGGGCCAAT-AACGA-G 979
Query 1048 TGGAGGGTACTACAGGTAGATGGG-AACGATGTAAATGGACTTTGCAAAACAATAAAGAC 1106
| || ||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||
Sbjct 980 AGC-GG-TACTACAGGTA-ATGGGGAACGATGTAAATGGAGTTTGCAAAGCAATAAAGAC 1036
Query 1107 ATTAAAAGCAGCATACCATACCATAAGAAGAACAGCATCCAAGGCTATCGATCTCTTATC 1166
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct 1037 ATTAAAAGCAGCATACCATACCATAAAAAGAACAGCATCGAAGGCTATCGATCTCTCATC 1096
Query 1167 TTCAGTGGTGATCACGACATGCTAACACCTTACGTTGGAACTCAAGACTGGATAAGATCT 1226
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1097 TTCAGTGGTGATCACGACATGCTAACACCTTACATTGGAACTCAAGACTGGATCAGATCT 1156
Query 1227 CTCAACTATTCCATTATTGACAAATGGAGGCCATGGATGATACTTGATCAAGTCGCTGGA 1286
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CTTAACTATTCCATTATTGACAAATGGAGGCCATGGATGATACTTGATCAAGTCGCTGGA 1216
Query 1287 TACACTACGACTTACGCTAATAAGATGACATTTGCTACTGTGAAAGGTGGCGGGCACACG 1346
|||||||||||||| ||||| | |||||||||||| || |||||||| || |||||||||
Sbjct 1217 TACACTACGACTTATGCTAACAGGATGACATTTGCAACAGTGAAAGGAGGAGGGCACACG 1276
Query 1347 TTAGACTATAAACC-AGATGAGAATTCAATCTTGTTCAAGAGGT 1389
|||||||||||||| | | |||||||||||||||||| ||||||
Sbjct 1277 TTAGACTATAAACCCA-AGGAGAATTCAATCTTGTTCCAGAGGT 1319
Score = 100 bits (54), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 6 TAAACAAAGACTAAAAGATGTTTGTTTGGGTCAACGTCTCTGTTTTCCAAGATAAAGATG 65
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 TAAACAAAGACTAAAAGATGTTTGTTTGGGTCAACGTCTCTGTTTTTGAAGATAAAAATG 60
Query 66 TTT 68
|||
Sbjct 61 TTT 63
> Ahg481165 jgi|Araly1|481165|fgenesh2_kg.4__225__AT2G22980.2
Length=1378
Score = 553 bits (299), Expect = 1e-156
Identities = 938/1237 (76%), Gaps = 82/1237 (7%)
Strand=Plus/Plus
Query 124 AGTTGCTGCTGCTGC-AACTTGTGCTTCTGTTGACTAAGCATGCTGATTCAAGTTCTATC 182
|||| ||||| || | || |||| ||| | |||| | | |||||| |||| | |||||
Sbjct 149 AGTTTCTGCTACTTCTAA-TTGTACTTGTCTTGAGTTACCATGCTCATTCTGGCTCTATT 207
Query 183 ATCAAATATCTTCCTGGTTTTGAAGGCCCTCTTCCCTTCGAGCTCGAAACCGGGTACATT 242
|||||| ||||||||||||||||||||||||||| || || || ||||||||||| |||
Sbjct 208 GTCAAATTTCTTCCTGGTTTTGAAGGCCCTCTTCCTTTTGAACTTGAAACCGGGTATATT 267
Query 243 GGTGTTGGTGAGGAAGATGAAGAT-CAAATGTTCTACTACTTCATCAAATCTGAG-AGCA 300
||| ||||||||||||| |||| | ||| |||| ||||| ||||| ||||||||| || |
Sbjct 268 GGTATTGGTGAGGAAGAGGAAG-TGCAATTGTTTTACTATTTCATAAAATCTGAGAAG-A 325
Query 301 ATCCAAAA-ACAGACCCTCTTCTTCTCTGGCTAAGTGGAGGACCTGGTTGCTCTTCTTTC 359
|||||||| | ||||||||||||||| ||| ||| |||||| ||||| || || ||| ||
Sbjct 326 ATCCAAAAGA-AGACCCTCTTCTTCTATGGTTAACTGGAGGGCCTGGATGTTCCTCTCTC 384
Query 360 ACTGGTCTTATATATGAGAACGGGCCACTTGG-TTTCAAGGTTGAGGCGTACAATGGAAG 418
||||| ||| | | |||||| || || ||| ||| ||| |||||| |||||||||||
Sbjct 385 ACTGGCCTTCTTTTTGAGAATGGACC-GGTGGCTTTGAAGTTTGAGGTTTACAATGGAAG 443
Query 419 TATCCCCA-CGTTGGTCTCTACTACATATTCATGGACAAAGGTTGCGAATATAATCTAT- 476
| | ||| | |||||||||||||||||||||||||||||| | || || ||||| | |
Sbjct 444 TGT-TCCATCTTTGGTCTCTACTACATATTCATGGACAAAGATGGCCAACATAATAT-TC 501
Query 477 TTAGATCAACCTGTTGG-GACTGGCTTCTCCTACTCAAGAAATCCACTTGCTGATATACC 535
|| ||||| |||||||| | ||||||||||||| ||||||| |||||||| ||||| |
Sbjct 502 TTGGATCAGCCTGTTGGAG-CTGGCTTCTCCTATTCAAGAACTCCACTTGTTGATAAAAT 560
Query 536 AAGTGACACAGGATCA-GCTAAGCGGG-TCGATGAGTTTCTTCGTAAA-TGGCTAACCAA 592
|||||||| || | | | ||| ||| || |||||||||||| ||| ||| ||| |||
Sbjct 561 TAGTGACACGGG-TGAAGTTAAA-GGGATCTATGAGTTTCTTCA-AAAGTGGTTAAGCAA 617
Query 593 GCATCCTGAGTATTTCTCCAACCCTTT-CTATGCCGGTGGAAATTCTTATTCCGGTAAGA 651
|||| | | ||| ||||||||||| | ||| || ||| ||||||||||||||| |
Sbjct 618 ACATCAACAATTTTTTTCCAACCCTTTTC-ATGTTGGCGGAGATTCTTATTCCGGTATGG 676
Query 652 TGGTTCCGGTCATCGTTCAAGAAATCT-CAAATGGAAATTGTATTTACGGCAAACCTCAA 710
| ||||| | | | ||||||||||| | |||| ||||||| || | ||| | ||
Sbjct 677 TTGTTCCCGCCCTAGTTCAAGAAAT-TGCAAAAGGAAATT--AT---C---AAA--T-AA 724
Query 711 ATAAGGCTTCAGGGCTATGTGCTCGGAAGTCCGGTAACAGACTA-TGA-TCTTGAT-AGA 767
|| || ||||| ||| | ||||||| ||| ||||||| || ||| ||| || |||
Sbjct 725 AT----CTACAGGGTTATATCCTCGGAAACCCGATAACAGA-TACTGAATCT-GAACAGA 778
Query 768 AAT-TCTCGTATTCAATTTGCTCATGGAATGGCACTTA-TCTCTAATGAACTCTATGAGT 825
| | || | |||| || |||||||||||||||| ||| ||||| ||||||| || ||||
Sbjct 779 ACTATCA-G-ATTCCATATGCTCATGGAATGGCA-TTAATCTCTGATGAACTATACGAGT 835
Query 826 CGATGAAGAGAA-CTTGTGGAGGAAACTATATTTTTGTAGATCCTCTTAACACAGAATGC 884
| |||||||||| || | || ||| ||| | ||| ||| | ||||||||| |||||
Sbjct 836 CAATGAAGAGAATCT-GCAAAGAAAATTATGTGAATGTGGATGCACTTAACACAAAATGC 894
Query 885 T-TGGAACTCATAAAAGACTATGACAACTGTGTTTC-TGGAA-T-ATATGAAA-ATCTTA 939
| | ||||||||||||| ||| | || ||| || | | || | | || || ||| ||
Sbjct 895 TATA-AACTCATAAAAGATTATCAAAAGTGTATT-CATA-AACTGA-AT-AAGTATCATA 949
Query 940 TCCTCGTACCAAAATGTGACCTTACATCTCCTGATTGCCATTCGTATCGGTCTATGCTAT 999
| | |||| | || || | ||||||||||||||| || ||| ||| | | || |
Sbjct 950 TATTATTACCTGACTGCGATATAACATCTCCTGATTGCTTTTTATATAGGTAT-T-CTCT 1007
Query 1000 CC-GA--TTACTGGGCTAATAACGAGAGCGTACGCAGAGCACTTAAAGTTG-TGGAGGGT 1055
| || || ||||| || || ||||||| ||| |||| || |||| | ||||
Sbjct 1008 CATGACCTTT-TGGGCCAACGACAAGAGCGTTCGCGGAGCTCTGCAAGTCAATA-AGGGA 1065
Query 1056 ACTACAGGTAGA-TGGGAACGATGTAA--ATGGAC-T-TTGCAAAACAATAAAGACATTA 1110
| || ||| ||| |||| | |||||| || | | || | | ||| | ||||| |
Sbjct 1066 AGTATAGG-AGAATGGGTGCAATGTAACTATAAAAATATTTCGTAT-AATTACGACATCA 1123
Query 1111 AAAGCAGCATAC-CATACCATAAGAAGAACAGCATCCAAGGCTATCGATCTCTTATCTTC 1169
| |||||| | | ||||||||| |||||| || || | ||||| ||||||||||||| |
Sbjct 1124 AGAGCAGCGT-CGCATACCATATGAAGAATAGTATTGATGGCTACCGATCTCTTATCTAC 1182
Query 1170 AGTGGTGATCACGACATGCTAACACCTTACGTTGGAACTCAAGACTGGATAAGATCTCTC 1229
| |||||| || || ||| | |||| | ||| |||||||| ||||||||||||||||
Sbjct 1183 AATGGTGACCATGATATGATGGTGCCTTTCCTTGCAACTCAAGCCTGGATAAGATCTCTC 1242
Query 1230 AACTATTCCATTATTGACAAATGGAGGCCATGGATGATACTTGATCAAGTCGCTGGATAC 1289
|| |||||||| | ||| | |||||||| ||||||||| |||||| ||||||||||
Sbjct 1243 AATTATTCCATCACTGATGATTGGAGGCCTTGGATGATAAACGATCAAATCGCTGGATAT 1302
Query 1290 ACTACGA-CTTACGCTAATAAGATGACATTTGCTACT 1325
|| | || |||| | ||||| |||||||||||||||
Sbjct 1303 ACAA-GAACTTATTCCAATAAAATGACATTTGCTACT 1338
> Ahg932263 jgi|Araly1|932263|scaffold_400251.1
Length=1260
Score = 477 bits (258), Expect = 9e-134
Identities = 879/1168 (75%), Gaps = 85/1168 (7%)
Strand=Plus/Plus
Query 162 CATGCTGATTCAAGTTCTATCATCAAATAT-CTTCCTGGTTTTGAAGGCCCTCTTCCCTT 220
|||| |||||| | |||||| |||| | | ||||| |||||||||||||||||||| ||
Sbjct 72 CATGTTGATTCTGGCTCTATCGTCAAGT-TCCTTCCCGGTTTTGAAGGCCCTCTTCCTTT 130
Query 221 CGAGCTCGAAACCGGGTACATTGGTGTTGGTGAGGAAGATGAAGAT-CAAAT-GTTCTAC 278
|| ||||||||||||||||||||| |||||||| |||| |||| | | ||| |||||||
Sbjct 131 TGAACTCGAAACCGGGTACATTGGTATTGGTGAGAAAGAGGAAG-TGC-AATCGTTCTAC 188
Query 279 TACTTCATCAAATCTGAGAGCAATCCAAAA-ACAGACCCTCTTCTTCTCTGGCTAAGTGG 337
||||| ||||| || |||| |||||||||| | ||||||||||||||||||| |||||||
Sbjct 189 TACTTTATCAAGTCCGAGAACAATCCAAAAGA-AGACCCTCTTCTTCTCTGGTTAAGTGG 247
Query 338 AGGACCTGGTTGCTCTTCTTTCACTGGTCTTATATAT-GAGAACGGGCCACTTGG-TTTC 395
||||||||| || |||||| ||||||| ||| | | | ||||| || || |||| |||
Sbjct 248 AGGACCTGGATGTTCTTCTATCACTGGCCTTCT-TTTCGAGAATGGACC-TTTGGCTTT- 304
Query 396 AAGGT-TGAGGCGTACAATGGAAGTATCCCCACGTTGGTCTCTACTACATATTCATGGAC 454
|| || |||| |||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 305 AAAGTCCGAGGTTTACAATGGAAGTGTCCCTTCTTTGGTCTCTACTACATATTCATGGAC 364
Query 455 AAAGGTTGCGAATATAATCTAT-TTAGATCAACCTGTTGG-GACTGGCTTCTCCTACTCA 512
|||| ||||| ||||| | | || || || |||||||| | ||||||||||||| |||
Sbjct 365 AAAGACGGCGAACATAATAT-TCTTGGACCAGCCTGTTGGAG-CTGGCTTCTCCTATTCA 422
Query 513 AGAAATCCACTTGCTGATATACCAAGTGACACAGGATCAGCTAAGCGGGTCGATGAGTTT 572
|||| |||||| ||||| || | ||||||||| || |||| || ||||||||
Sbjct 423 AGAACCCCACTTATTGATACGCCTACTGACACAGGCGAAGTTAAGAATATCCATGAGTTT 482
Query 573 CTTCGTAAA-TGGCTAACCAAGCATCCTGAGTATTTCT-CCAACCCTTTCTATGCCGGTG 630
|| | ||| ||||||| ||||||||| ||| ||||| |||||||||| ||||| | |
Sbjct 483 CTCCA-AAAGTGGCTAAGCAAGCATCCACAGT-TTTCTTCCAACCCTTTTTATGCTTGCG 540
Query 631 GAAATTCTTATTCCGGTAAGATGGTTCCGGTCATCGTTCAAGAAATCTC-AAATGGAAAT 689
|| ||||||||||||||| ||| ||||| | | |||||||||||||||| ||| ||||||
Sbjct 541 GAGATTCTTATTCCGGTATGATTGTTCCAGCCCTCGTTCAAGAAATCTCTAAA-GGAAAT 599
Query 690 TGTATTTACGGCAAACCTCAAATAAGGCTTCAGGGCTATGTGCTCGG-AAGTCCGGTAAC 748
| ||| | ||| ||||| |||| || ||||||||| | ||||| || ||| ||||
Sbjct 600 TATATATGTTGCACACCTCCTATAAATCTACAGGGCTATATACTCGGGAAC-CCGATAAC 658
Query 749 AGACTAT-GATCTTGAT-AGAAATTCTCGTA-TTCAATTTGCTCATGGAATGGCACTTAT 805
| |||| || || | ||| | || | ||| |||| |||||||||||||||| ||
Sbjct 659 AT-CTATTGAA---GACCA-AAACTATCA-AGTTCCATTTTCTCATGGAATGGCACTAAT 712
Query 806 CTCTA-ATGAACTCTATGAGTCGATGAAGAGAACTTGTGGA-GGAAACTATATTTT--TG 861
|| | ||||||| || ||||| || | |||| | || | ||||| | ||||| ||
Sbjct 713 TTC-AGATGAACTATACGAGTCAATTAGGAGAGCCTGCA-ACGGAAA-T-TATTTCAATG 768
Query 862 TAGATCCTCTTAACACAGAATGCTTGGAACTCATAAAAGACTATGACAACTGTGTTTCTG 921
| ||| | | ||||||| |||| ||| |||| | |||| || | || | || | |
Sbjct 769 TGGATTCACGTAACACAAAATGTTTGAAACTTGTTGAAGAATACCATAA--GAGTACC-G 825
Query 922 G-AA--TATATGAA---AATCTTATCCTCGTACCAAAATGTGAC-CTTACATCTCCTGAT 974
|| || ||||| ||| | || || |||| | || ||| | ||||||||| ||
Sbjct 826 ACAAACTAAATGAATTCAATAT-ATTATC--ACCAGATTGCGACACG-ACATCTCCTAAT 881
Query 975 TGCCATTCGTATCGGTCT-ATGCTA-TCCGATTACTGGG-CTAATAACGAGAGCGTACGC 1031
||| || |||| | | || || | | | ||||| | || |||||||||| |||
Sbjct 882 TGCTTTTTATATCCATATTAT-CTCCTTAGCT-ACTGGATC-AACGACGAGAGCGTTCGC 938
Query 1032 AGA-GCACTTAAAGTTG-TGGAG-GGTACTACAGGTAGA-TGGGAACGATGTAA--AT-G 1084
| | || ||| | ||| | || || | || || ||| ||||| ||||||| || |
Sbjct 939 A-ACGCTCTTCATGTTAATA-AGTGG-AGTATTGG-AGAATGGGAGCGATGTACTTATCG 994
Query 1085 --GACTT-TGCAAAACAATAAAGACATTAA-AAGCAGCATACCATACCATAAGAAGAACA 1140
||| | | | | |||| |||||||| || || ||||||||||||||||| ||| ||||
Sbjct 995 AAGACCTATCCCATACAACAAAGACATCAATAA-CAGCATACCATACCATATGAATAACA 1053
Query 1141 GCATCCAA-GGCTATCGATCTCTTATCTTCAGTGGTGATCACGACATG-CTAACACCTTA 1198
| || | ||||| |||||||| |||| |||||||||||| || || | || ||
Sbjct 1054 GTATT-AGTGGCTACCGATCTCTCATCTACAGTGGTGATCATGATTTGACGGTT-CCATA 1111
Query 1199 CGTTGGAACTCAAGACTGGATAAGATCTCTCAACTATTCCATTATTGACAAATGGAGGCC 1258
| | | |||||||| |||||||| |||||| || || ||||| ||| | ||||||| ||
Sbjct 1112 CCTCGCAACTCAAGCCTGGATAAAATCTCTAAATTACTCCATCATTCATGAATGGAGACC 1171
Query 1259 ATGGATGAT-ACTTGATCAAGTCGCTGG 1285
||| |||| | |||||| |||||||
Sbjct 1172 TTGGGTGATTAAA-GATCAAATCGCTGG 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52793079570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5