BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12250.4
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478587 jgi|Araly1|478587|fgenesh2_kg.3__1288__AT3G12250.4 1696 0.0
Ahg487510 jgi|Araly1|487510|fgenesh2_kg.6__644__AT5G06950.1 1072 0.0
Ahg487514 jgi|Araly1|487514|fgenesh2_kg.6__648__AT5G06960.1 828 0.0
> Ahg478587 jgi|Araly1|478587|fgenesh2_kg.3__1288__AT3G12250.4
Length=1047
Score = 1696 bits (918), Expect = 0.0
Identities = 974/1002 (97%), Gaps = 0/1002 (0%)
Strand=Plus/Plus
Query 67 TTTTATTATCTCTACAATGTCACTCCTGGGAGGCTTGTACCGGAATCCCTTGGTAAAACT 126
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 46 TTTTATTTTCTCTACAATGTCACTCCTGGGAGGCTTGTACCGGGATCCCTTGGTAAAACT 105
Query 127 TGGGGCATTCTACCGTCTGATAGAGGGCATATGCATGCTGCTGCCTCTGATTCCAGTGAT 186
|||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 106 TGGGACATTCTACCGTCTGATAGAGGGCAAATGCTTGCTGCTGCATCTGATTCCAGTGAT 165
Query 187 CGATCAAAGGATAAGTTGGATCAAAAGACCCTTCGTAGGCTTGCTCAAAATCGTGAGGCA 246
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CGATCAAAGGATAAGATGGATCAAAAGACCCTTCGTAGGCTTGCTCAAAATCGTGAGGCA 225
Query 247 GCAAGAAAAAGCAGATTGAGGAAGAAGGCGTATGTTCAGCAGCTGGAGAATAGTCGATTA 306
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 226 GCAAGAAAAAGCAGATTGAGGAAGAAAGCGTATGTTCAGCAGCTGGAAAATAGTCGATTA 285
Query 307 AAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAAGACAGCAGGGAGTTTTCATCTCA 366
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 286 AAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAAGACAGCAGGGCGTTTTCATCTCA 345
Query 367 AGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATGGGGCTTTGGCATTTGATGCAGAA 426
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 346 AGTTCAGGAGACCAAGCTCATTCTACTGGTGGAAATGGGGCTTTGGCATTTGATGCAGAA 405
Query 427 CACTCACGATGGCTTGAAGAAAAGAACAGGCAAATGAACGAGCTGAGATCTGCCCTGAAT 486
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CATTCACGATGGCTTGAAGAAAAGAACAGGCAAATGAACGAGCTGAGATCTGCCCTGAAT 465
Query 487 GCTCATGCAGGTGATACTGAGCTCCGGATAATTGTGGATGGAGTGATGGCTCACTATGAG 546
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 466 GCTCATGCAGGTGATACTGAGCTCCGAATAATTGTGGATGGAGTGATGGCTCACTATGAG 525
Query 547 GAGCTTTTCAGGATTAAGAGCAATGCAGCTAAGAATGATGTCTTCCACTTGTTATCTGGA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GAGCTTTTCAGGATTAAGAGCAATGCAGCTAAGAATGATGTCTTCCACTTGTTATCTGGA 585
Query 607 ATGTGGAAAACACCAGCTGAGCGATGTTTCTTGTGGCTTGGCGGGTTCCGCTCATCCGAA 666
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 586 ATGTGGAAAACTCCAGCTGAGAGATGTTTCTTGTGGCTTGGCGGGTTCCGCTCATCCGAA 645
Query 667 CTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCATGACAGAACGACAGGTAATGGGCATC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 646 CTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCATGACAGAACGACAGGTAATGGGCCTA 705
Query 727 AATAGCTTGCAGCAGACGTCGCAGCAGGCAGAAGATGCTTTATCTCAAGGGATGGAGAGT 786
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 706 AATAGCTTGCAGCAGACGTCCCAGCAGGCGGAAGATGCTTTATCTCAGGGGATGGAGAGT 765
Query 787 TTACAGCAATCCCTAGCTGATACTTTATCCAGTGGAACTCTTGGTTCCAGTTCATCGGAT 846
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 766 TTACAACAATCCCTAGCTGATACTTTATCCAGTGGAACTCTTGGTTCCAGTTCATCTGAT 825
Query 847 AATGTCGCGAGCTACATGGGTCAGATGGCCATGGCAATGGGGCAGTTAGGCACCCTCGAA 906
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 826 AATGTCGCGAGCTACATGGGTCAGATGGCCATGGCGATGGGGCAGTTAGGCACCGTCGAA 885
Query 907 GGATTCATACGCCAGGCTGATAACTTGAGGCTGCAAACACTACAACAGATGCTTCGAGTA 966
||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 886 GGATTCATACGGCAGGCTGATAACTTAAGGCTGCAAACACTTCAACAGATGCTTAGAGTA 945
Query 967 TTAACAACACGTCAGTCAGCTCGTGCTCTTCTTGCTATACACGATTATTCATCTCGATTA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TTAACAACACGTCAGTCAGCTCGTGCTCTTCTTGCTATACACGATTATTCATCTCGATTA 1005
Query 1027 CGTGCTCTTAGTTCCTTGTGGCTTGCCCGGCCAAGAGAGTGA 1068
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 CGTGCTCTTAGTTCCTTGTGGCTTGCCCGGCCAAGAGAGTGA 1047
> Ahg487510 jgi|Araly1|487510|fgenesh2_kg.6__644__AT5G06950.1
Length=1623
Score = 1072 bits (580), Expect = 0.0
Identities = 800/908 (88%), Gaps = 8/908 (1%)
Strand=Plus/Plus
Query 165 TGCTGCCTCTGATTCCAGTGATCGATCAAAGGATAAGTTGGATCAAAAGACCCTTCGTAG 224
|||||| |||||||| ||||| ||||| |||| ||| ||||||||||||||||||||||
Sbjct 370 TGCTGCTTCTGATTCGAGTGACCGATCGAAGGGCAAGATGGATCAAAAGACCCTTCGTAG 429
Query 225 GCTTGCTCAAAATCGTGAGGCAGCAAGAAAAAGCAGATTGAGGAAGAAGGCGTATGTTCA 284
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 430 GCTTGCTCAAAACCGTGAGGCAGCAAGGAAAAGCAGATTGAGGAAGAAGGCGTATGTTCA 489
Query 285 GCAGCTGGAGAATAGTCGATT-AAAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAA 343
|||||||||||| || || || ||| || || || |||||||||||||||||||||||||
Sbjct 490 GCAGCTGGAGAACAGCCGCTTGAAA-CTTACCCAGCTTGAGCAGGAGCTGCAAAGAGCAA 548
Query 344 GACAGCAGGGAGTTTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATG 403
|||||||||| || ||||| ||||| ||||||||||||| ||| |||||||||| ||||
Sbjct 549 GACAGCAGGGCGTCTTCATTTCAAGCACAGGAGACCAAGCCCATGCTACTGGTGGAAATG 608
Query 404 GGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACAGGCAAATGA 463
| |||||||| |||||||| ||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 609 GTGCTTTGGCGTTTGATGCTGAACACTCACGGTGGCTGGAAGAAAAGAACAAGCAAATGA 668
Query 464 ACGAGCTGAGATCTGCCCTGAATGCTCATGCAGGTGATACTGAGCTCCGGATAATTGTGG 523
|||||||||| ||||| |||||||| |||||||||||| ||||||| || ||||| || |
Sbjct 669 ACGAGCTGAGGTCTGCTCTGAATGCGCATGCAGGTGATTCTGAGCTTCGAATAATAGTCG 728
Query 524 ATGGAGTGATGGCTCACTATGAGGAGCTTTTCAGGATTAAGAGCAATGCAGCTAAGAATG 583
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 729 ATGGTGTGATGGCTCACTATGAAGAGCTTTTCAGGATAAAGAGCAATGCAGCTAAGAATG 788
Query 584 ATGTCTTCCACTTGTTATCTGGAATGTGGAAAACACCAGCTGAGCGATGTTTCTTGTGGC 643
||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 789 ATGTCTTTCACTTGCTATCTGGCATGTGGAAAACACCAGCTGAAAGATGTTTCTTGTGGC 848
Query 644 TTGGCGGGTTCCGCTCATCCGAACTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCATGA 703
|||| || || || ||||||||||||||||||||||| ||||||||| | ||||| ||||
Sbjct 849 TTGGTGGCTTTCGTTCATCCGAACTTCTCAAGCTTCTGGCGAATCAGTTGGAGCCAATGA 908
Query 704 CAGA-ACGACAGGTAATGGGCATCAATAGCTTGCAGCAGACGTCGCAGCAGGCAGAAGAT 762
|||| | ||||| | |||||||| |||| |||||| ||||| ||||||||||| ||||||
Sbjct 909 CAGAGA-GACAGTTGATGGGCATAAATAACTTGCAACAGACATCGCAGCAGGCTGAAGAT 967
Query 763 GCTTTATCTCAAGGGATGGAGAGTTTACAGCAATCCCTAGCTGATACTTTATCCAGTGGA 822
||||| ||||||||||||||||| ||||| || || ||||||||||||||||| || ||
Sbjct 968 GCTTTGTCTCAAGGGATGGAGAGCTTACAACAGTCTCTAGCTGATACTTTATCGAGCGGG 1027
Query 823 ACTCTTGGTTCCAGTTCATC-GGATAATGTCGCGAGCTACATGGGTCAGATGGCCATGGC 881
||||||||||| || ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1028 ACTCTTGGTTCAAGCTCATCAGGG-AATGTGGCGAGCTACATGGGTCAGATGGCCATGGC 1086
Query 882 AATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGGCTGATAACTTGAGGCTGCA 941
|||||| ||||||| |||||||||||||| || |||||||||||||| ||||| || ||
Sbjct 1087 AATGGGAAAGTTAGGTACCCTCGAAGGATTTATTCGCCAGGCTGATAATTTGAGACTACA 1146
Query 942 AACACTACAACAGATGCTTCGAGTATTAACAACACGTCAGTCAGCTCGTGCTCTTCTTGC 1001
|||| | ||||||||| | |||||||||||||||| |||||||| |||||||| |||||
Sbjct 1147 AACATTGCAACAGATGATAAGAGTATTAACAACACGACAGTCAGCGCGTGCTCTACTTGC 1206
Query 1002 TATACACGATTA-TTCATCTCGATTACGTGCTCTTAGTTCCTTGTGGCTTGCCCGGCCAA 1060
|| || ||||| ||| || || |||| |||||||| ||||| |||||||| || || |
Sbjct 1207 AATTCATGATTACTTC-TCACGGCTACGAGCTCTTAGCTCCTTATGGCTTGCTCGACCCA 1265
Query 1061 GAGAGTGA 1068
||||||||
Sbjct 1266 GAGAGTGA 1273
> Ahg487514 jgi|Araly1|487514|fgenesh2_kg.6__648__AT5G06960.1
Length=1463
Score = 828 bits (448), Expect = 0.0
Identities = 764/915 (83%), Gaps = 28/915 (3%)
Strand=Plus/Plus
Query 168 TGCCTCTGATTCCAGTGATCGATCAAAGGA-TAAGTTGGATCAAAAGACCCTTCGTAGGC 226
||| |||||||| ||||| || ||||| || ||| ||||||||||||| ||||||||||
Sbjct 395 TGCTTCTGATTCTAGTGACCGTTCAAA-GAGTAAAATGGATCAAAAGACGCTTCGTAGGC 453
Query 227 TTGCTCAAAATCGTGAGGCAGCAAGAAAAAGCAGATTGAGGAAGAAGGCGTATGTTCAGC 286
| |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||
Sbjct 454 TCGCTCAAAACCGTGAGGCTGCAAGGAAAAGCAGATTGAGGAAGAAAGCATATGTTCAGC 513
Query 287 AGCTGGAGAATAGTCGATTAAAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAAGAC 346
|||| |||||||| ||||| ||| | || ||||||||||||||||||||||||||||| |
Sbjct 514 AGCTAGAGAATAGCCGATTGAAGTTAACACAACTTGAGCAGGAGCTGCAAAGAGCAAGGC 573
Query 347 AGCAGGGAGT-TTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCA-ATGG 404
| ||||| || ||| |||||||| || ||||||||||| |||||||| ||| | ||||
Sbjct 574 AACAGGGTGTCTTT-ATCTCAAGCTCTGGAGACCAAGCCCATTCTACCACTGG-AGATGG 631
Query 405 GGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGA-AAAGAACAGGCAAATGA 463
||| ||||||||||||||||| || |||||||| ||||| ||| ||||| || ||||
Sbjct 632 GGCAATGGCATTTGATGCAGAATACAGACGATGGCAGGAAGATAAA-AACAGACAGATGA 690
Query 464 ACGAGCTGAGATCTGCCCT-GAATGCTCATGC-AGGTGATACTGAGCTCCGGATAATTGT 521
| |||||||| ||||| | || | |||| || | |||| ||||||| |||||||||||
Sbjct 691 AGGAGCTGAGTTCTGCTTTAGATT-CTCACGCGAC-TGATTCTGAGCTTCGGATAATTGT 748
Query 522 GGATGGAGTGATGGCTCACTATGAGGAGCTTTTCAGGATTAAGAG-CAATGCAGCTAAGA 580
|||||||| || ||||||||||||||||||| |||||| || || ||| ||||||||||
Sbjct 749 AGATGGAGTAATAGCTCACTATGAGGAGCTTTACAGGATAAA-AGGCAACGCAGCTAAGA 807
Query 581 ATGATGTCTTCCACTTGTTATCTGGAATGTGGAAAACACCAGCTGAGCGATGTTTCTTGT 640
||||||||||||| || ||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 808 ATGATGTCTTCCATTTATTATCGGGGATGTGGAAAACACCAGCTGAGAGATGTTTCTTGT 867
Query 641 GGCTTGGCGGGTTCCGCTCATCCGAACTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCA 700
|||| || || ||||| ||||| ||||||||||||||| | ||||||||| | |||||
Sbjct 868 GGCTCGGTGGTTTCCGTTCATCAGAACTTCTCAAGCTTATAGCGAATCAGTTGGAGCCGT 927
Query 701 TGACAGAACGACAGGTAA-TGGGCATCAATAGCTTGCAGCAGACGTCGCAGCAGGCAGAA 759
||||||||| ||| | | | | ||| |||| |||||| ||| | || || || ||||||
Sbjct 928 TGACAGAACAACAA-TCACTAGACATAAATAACTTGCAACAGTCTTCTCAACAAGCAGAA 986
Query 760 GATGCTTTATCTCAAGGGATGGAGAGTTTACAGCAATCCCTAGCTGATACTTTATCCAGT 819
|||||||| |||||||||||||| | ||||||||||| || |||||||||||||| ||
Sbjct 987 GATGCTTTGTCTCAAGGGATGGATAACTTACAGCAATCACTCGCTGATACTTTATCGAGC 1046
Query 820 GGAACTCTTGGTTCCAGTTCATC-GGATAATGTCGC-GAGCTACATGGGTCAGATGGCCA 877
|| ||||| ||||| |||||||| || ||||| || | |||||||||||||||||||||
Sbjct 1047 GGGACTCTCGGTTCGAGTTCATCAGGG-AATGTAGCTG-GCTACATGGGTCAGATGGCCA 1104
Query 878 TGGCAATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGGCTGATAACTTGAGGC 937
|||| |||||| ||||||| || || |||||||| || ||||||||||||||||| ||||
Sbjct 1105 TGGCTATGGGGAAGTTAGGTACTCTTGAAGGATTTATCCGCCAGGCTGATAACTTAAGGC 1164
Query 938 TGCAAACACTA-CAACAGATGCTTCGAGTATTAACAACACGTCAGTCAGCTCGTGCTCTT 996
| |||||| || ||||| ||| | || |||||||||| || || || || ||||||||
Sbjct 1165 TACAAACA-TATCAACAAATGGTAAGAATATTAACAACCCGACAATCGGCGCGTGCTCTC 1223
Query 997 CTTGCTA-TACACGATTATTCATCT-CGATTACGTGCTCTTAGTTC-CTTGTGGCTTGCC 1053
|| || | ||||| ||||||||| | || |||| |||||||| || || |||||||||
Sbjct 1224 CTAGC-AGTACACAATTATTCAT-TGCGGTTACACGCTCTTAGCTCTCTA-TGGCTTGCC 1280
Query 1054 CGGCCAAGAGAGTGA 1068
| ||||||||||||
Sbjct 1281 AGACCAAGAGAGTGA 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5