BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12250.4 Length=1068 Score E Sequences producing significant alignments: (Bits) Value Ahg478587 jgi|Araly1|478587|fgenesh2_kg.3__1288__AT3G12250.4 1696 0.0 Ahg487510 jgi|Araly1|487510|fgenesh2_kg.6__644__AT5G06950.1 1072 0.0 Ahg487514 jgi|Araly1|487514|fgenesh2_kg.6__648__AT5G06960.1 828 0.0 > Ahg478587 jgi|Araly1|478587|fgenesh2_kg.3__1288__AT3G12250.4 Length=1047 Score = 1696 bits (918), Expect = 0.0 Identities = 974/1002 (97%), Gaps = 0/1002 (0%) Strand=Plus/Plus Query 67 TTTTATTATCTCTACAATGTCACTCCTGGGAGGCTTGTACCGGAATCCCTTGGTAAAACT 126 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 46 TTTTATTTTCTCTACAATGTCACTCCTGGGAGGCTTGTACCGGGATCCCTTGGTAAAACT 105 Query 127 TGGGGCATTCTACCGTCTGATAGAGGGCATATGCATGCTGCTGCCTCTGATTCCAGTGAT 186 |||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| Sbjct 106 TGGGACATTCTACCGTCTGATAGAGGGCAAATGCTTGCTGCTGCATCTGATTCCAGTGAT 165 Query 187 CGATCAAAGGATAAGTTGGATCAAAAGACCCTTCGTAGGCTTGCTCAAAATCGTGAGGCA 246 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 CGATCAAAGGATAAGATGGATCAAAAGACCCTTCGTAGGCTTGCTCAAAATCGTGAGGCA 225 Query 247 GCAAGAAAAAGCAGATTGAGGAAGAAGGCGTATGTTCAGCAGCTGGAGAATAGTCGATTA 306 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 226 GCAAGAAAAAGCAGATTGAGGAAGAAAGCGTATGTTCAGCAGCTGGAAAATAGTCGATTA 285 Query 307 AAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAAGACAGCAGGGAGTTTTCATCTCA 366 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 286 AAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAAGACAGCAGGGCGTTTTCATCTCA 345 Query 367 AGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATGGGGCTTTGGCATTTGATGCAGAA 426 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 346 AGTTCAGGAGACCAAGCTCATTCTACTGGTGGAAATGGGGCTTTGGCATTTGATGCAGAA 405 Query 427 CACTCACGATGGCTTGAAGAAAAGAACAGGCAAATGAACGAGCTGAGATCTGCCCTGAAT 486 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 CATTCACGATGGCTTGAAGAAAAGAACAGGCAAATGAACGAGCTGAGATCTGCCCTGAAT 465 Query 487 GCTCATGCAGGTGATACTGAGCTCCGGATAATTGTGGATGGAGTGATGGCTCACTATGAG 546 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 466 GCTCATGCAGGTGATACTGAGCTCCGAATAATTGTGGATGGAGTGATGGCTCACTATGAG 525 Query 547 GAGCTTTTCAGGATTAAGAGCAATGCAGCTAAGAATGATGTCTTCCACTTGTTATCTGGA 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 GAGCTTTTCAGGATTAAGAGCAATGCAGCTAAGAATGATGTCTTCCACTTGTTATCTGGA 585 Query 607 ATGTGGAAAACACCAGCTGAGCGATGTTTCTTGTGGCTTGGCGGGTTCCGCTCATCCGAA 666 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 586 ATGTGGAAAACTCCAGCTGAGAGATGTTTCTTGTGGCTTGGCGGGTTCCGCTCATCCGAA 645 Query 667 CTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCATGACAGAACGACAGGTAATGGGCATC 726 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 646 CTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCATGACAGAACGACAGGTAATGGGCCTA 705 Query 727 AATAGCTTGCAGCAGACGTCGCAGCAGGCAGAAGATGCTTTATCTCAAGGGATGGAGAGT 786 |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct 706 AATAGCTTGCAGCAGACGTCCCAGCAGGCGGAAGATGCTTTATCTCAGGGGATGGAGAGT 765 Query 787 TTACAGCAATCCCTAGCTGATACTTTATCCAGTGGAACTCTTGGTTCCAGTTCATCGGAT 846 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 766 TTACAACAATCCCTAGCTGATACTTTATCCAGTGGAACTCTTGGTTCCAGTTCATCTGAT 825 Query 847 AATGTCGCGAGCTACATGGGTCAGATGGCCATGGCAATGGGGCAGTTAGGCACCCTCGAA 906 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 826 AATGTCGCGAGCTACATGGGTCAGATGGCCATGGCGATGGGGCAGTTAGGCACCGTCGAA 885 Query 907 GGATTCATACGCCAGGCTGATAACTTGAGGCTGCAAACACTACAACAGATGCTTCGAGTA 966 ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||| Sbjct 886 GGATTCATACGGCAGGCTGATAACTTAAGGCTGCAAACACTTCAACAGATGCTTAGAGTA 945 Query 967 TTAACAACACGTCAGTCAGCTCGTGCTCTTCTTGCTATACACGATTATTCATCTCGATTA 1026 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 946 TTAACAACACGTCAGTCAGCTCGTGCTCTTCTTGCTATACACGATTATTCATCTCGATTA 1005 Query 1027 CGTGCTCTTAGTTCCTTGTGGCTTGCCCGGCCAAGAGAGTGA 1068 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 CGTGCTCTTAGTTCCTTGTGGCTTGCCCGGCCAAGAGAGTGA 1047 > Ahg487510 jgi|Araly1|487510|fgenesh2_kg.6__644__AT5G06950.1 Length=1623 Score = 1072 bits (580), Expect = 0.0 Identities = 800/908 (88%), Gaps = 8/908 (1%) Strand=Plus/Plus Query 165 TGCTGCCTCTGATTCCAGTGATCGATCAAAGGATAAGTTGGATCAAAAGACCCTTCGTAG 224 |||||| |||||||| ||||| ||||| |||| ||| |||||||||||||||||||||| Sbjct 370 TGCTGCTTCTGATTCGAGTGACCGATCGAAGGGCAAGATGGATCAAAAGACCCTTCGTAG 429 Query 225 GCTTGCTCAAAATCGTGAGGCAGCAAGAAAAAGCAGATTGAGGAAGAAGGCGTATGTTCA 284 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 430 GCTTGCTCAAAACCGTGAGGCAGCAAGGAAAAGCAGATTGAGGAAGAAGGCGTATGTTCA 489 Query 285 GCAGCTGGAGAATAGTCGATT-AAAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAA 343 |||||||||||| || || || ||| || || || ||||||||||||||||||||||||| Sbjct 490 GCAGCTGGAGAACAGCCGCTTGAAA-CTTACCCAGCTTGAGCAGGAGCTGCAAAGAGCAA 548 Query 344 GACAGCAGGGAGTTTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATG 403 |||||||||| || ||||| ||||| ||||||||||||| ||| |||||||||| |||| Sbjct 549 GACAGCAGGGCGTCTTCATTTCAAGCACAGGAGACCAAGCCCATGCTACTGGTGGAAATG 608 Query 404 GGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACAGGCAAATGA 463 | |||||||| |||||||| ||||||||||| ||||| ||||||||||||| |||||||| Sbjct 609 GTGCTTTGGCGTTTGATGCTGAACACTCACGGTGGCTGGAAGAAAAGAACAAGCAAATGA 668 Query 464 ACGAGCTGAGATCTGCCCTGAATGCTCATGCAGGTGATACTGAGCTCCGGATAATTGTGG 523 |||||||||| ||||| |||||||| |||||||||||| ||||||| || ||||| || | Sbjct 669 ACGAGCTGAGGTCTGCTCTGAATGCGCATGCAGGTGATTCTGAGCTTCGAATAATAGTCG 728 Query 524 ATGGAGTGATGGCTCACTATGAGGAGCTTTTCAGGATTAAGAGCAATGCAGCTAAGAATG 583 |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 729 ATGGTGTGATGGCTCACTATGAAGAGCTTTTCAGGATAAAGAGCAATGCAGCTAAGAATG 788 Query 584 ATGTCTTCCACTTGTTATCTGGAATGTGGAAAACACCAGCTGAGCGATGTTTCTTGTGGC 643 ||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 789 ATGTCTTTCACTTGCTATCTGGCATGTGGAAAACACCAGCTGAAAGATGTTTCTTGTGGC 848 Query 644 TTGGCGGGTTCCGCTCATCCGAACTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCATGA 703 |||| || || || ||||||||||||||||||||||| ||||||||| | ||||| |||| Sbjct 849 TTGGTGGCTTTCGTTCATCCGAACTTCTCAAGCTTCTGGCGAATCAGTTGGAGCCAATGA 908 Query 704 CAGA-ACGACAGGTAATGGGCATCAATAGCTTGCAGCAGACGTCGCAGCAGGCAGAAGAT 762 |||| | ||||| | |||||||| |||| |||||| ||||| ||||||||||| |||||| Sbjct 909 CAGAGA-GACAGTTGATGGGCATAAATAACTTGCAACAGACATCGCAGCAGGCTGAAGAT 967 Query 763 GCTTTATCTCAAGGGATGGAGAGTTTACAGCAATCCCTAGCTGATACTTTATCCAGTGGA 822 ||||| ||||||||||||||||| ||||| || || ||||||||||||||||| || || Sbjct 968 GCTTTGTCTCAAGGGATGGAGAGCTTACAACAGTCTCTAGCTGATACTTTATCGAGCGGG 1027 Query 823 ACTCTTGGTTCCAGTTCATC-GGATAATGTCGCGAGCTACATGGGTCAGATGGCCATGGC 881 ||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 1028 ACTCTTGGTTCAAGCTCATCAGGG-AATGTGGCGAGCTACATGGGTCAGATGGCCATGGC 1086 Query 882 AATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGGCTGATAACTTGAGGCTGCA 941 |||||| ||||||| |||||||||||||| || |||||||||||||| ||||| || || Sbjct 1087 AATGGGAAAGTTAGGTACCCTCGAAGGATTTATTCGCCAGGCTGATAATTTGAGACTACA 1146 Query 942 AACACTACAACAGATGCTTCGAGTATTAACAACACGTCAGTCAGCTCGTGCTCTTCTTGC 1001 |||| | ||||||||| | |||||||||||||||| |||||||| |||||||| ||||| Sbjct 1147 AACATTGCAACAGATGATAAGAGTATTAACAACACGACAGTCAGCGCGTGCTCTACTTGC 1206 Query 1002 TATACACGATTA-TTCATCTCGATTACGTGCTCTTAGTTCCTTGTGGCTTGCCCGGCCAA 1060 || || ||||| ||| || || |||| |||||||| ||||| |||||||| || || | Sbjct 1207 AATTCATGATTACTTC-TCACGGCTACGAGCTCTTAGCTCCTTATGGCTTGCTCGACCCA 1265 Query 1061 GAGAGTGA 1068 |||||||| Sbjct 1266 GAGAGTGA 1273 > Ahg487514 jgi|Araly1|487514|fgenesh2_kg.6__648__AT5G06960.1 Length=1463 Score = 828 bits (448), Expect = 0.0 Identities = 764/915 (83%), Gaps = 28/915 (3%) Strand=Plus/Plus Query 168 TGCCTCTGATTCCAGTGATCGATCAAAGGA-TAAGTTGGATCAAAAGACCCTTCGTAGGC 226 ||| |||||||| ||||| || ||||| || ||| ||||||||||||| |||||||||| Sbjct 395 TGCTTCTGATTCTAGTGACCGTTCAAA-GAGTAAAATGGATCAAAAGACGCTTCGTAGGC 453 Query 227 TTGCTCAAAATCGTGAGGCAGCAAGAAAAAGCAGATTGAGGAAGAAGGCGTATGTTCAGC 286 | |||||||| |||||||| ||||| |||||||||||||||||||| || |||||||||| Sbjct 454 TCGCTCAAAACCGTGAGGCTGCAAGGAAAAGCAGATTGAGGAAGAAAGCATATGTTCAGC 513 Query 287 AGCTGGAGAATAGTCGATTAAAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAAGAC 346 |||| |||||||| ||||| ||| | || ||||||||||||||||||||||||||||| | Sbjct 514 AGCTAGAGAATAGCCGATTGAAGTTAACACAACTTGAGCAGGAGCTGCAAAGAGCAAGGC 573 Query 347 AGCAGGGAGT-TTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCA-ATGG 404 | ||||| || ||| |||||||| || ||||||||||| |||||||| ||| | |||| Sbjct 574 AACAGGGTGTCTTT-ATCTCAAGCTCTGGAGACCAAGCCCATTCTACCACTGG-AGATGG 631 Query 405 GGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGA-AAAGAACAGGCAAATGA 463 ||| ||||||||||||||||| || |||||||| ||||| ||| ||||| || |||| Sbjct 632 GGCAATGGCATTTGATGCAGAATACAGACGATGGCAGGAAGATAAA-AACAGACAGATGA 690 Query 464 ACGAGCTGAGATCTGCCCT-GAATGCTCATGC-AGGTGATACTGAGCTCCGGATAATTGT 521 | |||||||| ||||| | || | |||| || | |||| ||||||| ||||||||||| Sbjct 691 AGGAGCTGAGTTCTGCTTTAGATT-CTCACGCGAC-TGATTCTGAGCTTCGGATAATTGT 748 Query 522 GGATGGAGTGATGGCTCACTATGAGGAGCTTTTCAGGATTAAGAG-CAATGCAGCTAAGA 580 |||||||| || ||||||||||||||||||| |||||| || || ||| |||||||||| Sbjct 749 AGATGGAGTAATAGCTCACTATGAGGAGCTTTACAGGATAAA-AGGCAACGCAGCTAAGA 807 Query 581 ATGATGTCTTCCACTTGTTATCTGGAATGTGGAAAACACCAGCTGAGCGATGTTTCTTGT 640 ||||||||||||| || ||||| || ||||||||||||||||||||| |||||||||||| Sbjct 808 ATGATGTCTTCCATTTATTATCGGGGATGTGGAAAACACCAGCTGAGAGATGTTTCTTGT 867 Query 641 GGCTTGGCGGGTTCCGCTCATCCGAACTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCA 700 |||| || || ||||| ||||| ||||||||||||||| | ||||||||| | ||||| Sbjct 868 GGCTCGGTGGTTTCCGTTCATCAGAACTTCTCAAGCTTATAGCGAATCAGTTGGAGCCGT 927 Query 701 TGACAGAACGACAGGTAA-TGGGCATCAATAGCTTGCAGCAGACGTCGCAGCAGGCAGAA 759 ||||||||| ||| | | | | ||| |||| |||||| ||| | || || || |||||| Sbjct 928 TGACAGAACAACAA-TCACTAGACATAAATAACTTGCAACAGTCTTCTCAACAAGCAGAA 986 Query 760 GATGCTTTATCTCAAGGGATGGAGAGTTTACAGCAATCCCTAGCTGATACTTTATCCAGT 819 |||||||| |||||||||||||| | ||||||||||| || |||||||||||||| || Sbjct 987 GATGCTTTGTCTCAAGGGATGGATAACTTACAGCAATCACTCGCTGATACTTTATCGAGC 1046 Query 820 GGAACTCTTGGTTCCAGTTCATC-GGATAATGTCGC-GAGCTACATGGGTCAGATGGCCA 877 || ||||| ||||| |||||||| || ||||| || | ||||||||||||||||||||| Sbjct 1047 GGGACTCTCGGTTCGAGTTCATCAGGG-AATGTAGCTG-GCTACATGGGTCAGATGGCCA 1104 Query 878 TGGCAATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGGCTGATAACTTGAGGC 937 |||| |||||| ||||||| || || |||||||| || ||||||||||||||||| |||| Sbjct 1105 TGGCTATGGGGAAGTTAGGTACTCTTGAAGGATTTATCCGCCAGGCTGATAACTTAAGGC 1164 Query 938 TGCAAACACTA-CAACAGATGCTTCGAGTATTAACAACACGTCAGTCAGCTCGTGCTCTT 996 | |||||| || ||||| ||| | || |||||||||| || || || || |||||||| Sbjct 1165 TACAAACA-TATCAACAAATGGTAAGAATATTAACAACCCGACAATCGGCGCGTGCTCTC 1223 Query 997 CTTGCTA-TACACGATTATTCATCT-CGATTACGTGCTCTTAGTTC-CTTGTGGCTTGCC 1053 || || | ||||| ||||||||| | || |||| |||||||| || || ||||||||| Sbjct 1224 CTAGC-AGTACACAATTATTCAT-TGCGGTTACACGCTCTTAGCTCTCTA-TGGCTTGCC 1280 Query 1054 CGGCCAAGAGAGTGA 1068 | |||||||||||| Sbjct 1281 AGACCAAGAGAGTGA 1295 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39762202431 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5