BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12260.1
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478588 jgi|Araly1|478588|fgenesh2_kg.3__1289__AT3G12260.1 1066 0.0
> Ahg478588 jgi|Araly1|478588|fgenesh2_kg.3__1289__AT3G12260.1
Length=662
Score = 1066 bits (577), Expect = 0.0
Identities = 634/662 (96%), Gaps = 2/662 (0%)
Strand=Plus/Plus
Query 52 GAAGGTGAAATTTTTCGATTTCGTA-GATCAAAATGGCGGCACCATTCGCGTTGAGGAAA 110
||||| ||| || |||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 1 GAAGGAAAAAATTCTCGATTGCGTAGGATCAAAATGGCGGCACCATTCACGTTGAGGAAA 60
Query 111 ATCGGTGTTCCTCCGAACTCGGCGAACCTGACGGAAGCTCGCCGCCGTGTTTTCGATTTC 170
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 ATCGGTGTTCCACCGAACTCGGCGAACCTGACGGAAGCTCGCCGCCGTGTATTCGATTTC 120
Query 171 TTTAGAGCTGCCTGTAGATCTATCCCCACCATCATGGACATTTACAATCTTCAAGATGTC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTAGAGCTGCCTGTAGATCTATCCCCACCATCATGGACATTTACAATCTTCAAGATGTC 180
Query 231 GTCGCTCCTTCTCAGCTCCGCTATGCTATCTCTGCTCAGATTCGGAATAACGCTCACATC 290
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GTCGCGCCTTCTCAGCTCCGCTATGCAATCTCTGCTCAGATTCGGAATAACGCTCACATC 240
Query 291 ACCGATCCTAAGGTAATTGATCTTCTTATATTCAAAGGAATGGAAGAGCTGACTGACATT 350
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 ACCGACCCTAAGGTAATTGATCTTCTTATATTCAAGGGAATGGAAGAGCTGACTGACATA 300
Query 351 GTGGATCACGCAAAGCAGCGTCACCACATCATCGGTCAATATGTGGTGGGTGAAGGGCTC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGATCACGCAAAGCAGCGTCACCACATCATCGGTCAATATGTGGTGGGTGAAGGGCTC 360
Query 411 GTGCAGAATACTGGAAACAAGGATCAAGGAAAGACTGATTTTCTCAAGAATTTCTACACC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGCAGAATACTGGAAACAAGGATCAAGGAAAGACTGATTTTCTCAAGAATTTCTACACC 420
Query 471 AGCAACTACTTTTGAACTGGTGATGTTTACTTTTCGAGTTTCACATAAGCTGTACTGTTT 530
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 AGCAACTACTTCTGAACTGGTGATGTTTACTTTTCGAGTTTCACATAAGCTGTACTGGTT 480
Query 531 ATGCTGCTTCAGTTCTTGCTCAAGTTT-GCATATGTCTTGCCAGTATTGTATTCTCGACA 589
||||||||||||||| || |||||||| ||||| ||||||||||||||||||| |||||
Sbjct 481 ATGCTGCTTCAGTTCATGTTCAAGTTTCGCATAAGTCTTGCCAGTATTGTATTGTCGACT 540
Query 590 TTTGGAAGAAGTCTTCTTCCTGGAAATAATTAGATCTTTTCATTTGTATGAGTATTTTCT 649
|||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 541 TTTGGAAGAAATCTTCTTCCCGAAAATAATTAGATCTTTTCATTTGTACGAGTATTTTCT 600
Query 650 CTGACTCAGGTTGGTTATACATAGTATTAGCCAAACCTCTGTAAGCTTTATGTGTGACAG 709
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 601 CTGACTCAGGTTGGTTATACATAGTATTAGCCAAACCTCTGTAAGCATTATCTGTGACAG 660
Query 710 TG 711
||
Sbjct 661 TG 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29430891924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5