BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12270.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318005 jgi|Araly1|318005|fgenesh1_pm.C_scaffold_3001021 2784 0.0
> Ahg318005 jgi|Araly1|318005|fgenesh1_pm.C_scaffold_3001021
Length=1803
Score = 2784 bits (1507), Expect = 0.0
Identities = 1711/1810 (95%), Gaps = 11/1810 (1%)
Strand=Plus/Plus
Query 10 ATGGCGGCGACAATGGTGAAGCACGAGATTCTCAACTACAGCGAGGATGAAGAAGAAAAT 69
||||||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCGGCGACAATGGTGAAGGACGGGAATCTCAACTACAGCGAAGATGAAGAAGAAAAC 60
Query 70 TACTCAGACGAAGGAGATTGGGGAGACTGGAAAGCTGATGATAATGGTATAGAaggagga 129
||||||||||| ||||||||||| ||||||||||| ||||||| ||| ||| |||| |
Sbjct 61 TACTCAGACGACGGAGATTGGGGTGACTGGAAAGCAGATGATAGTGGCGTAGGAGGA-G- 118
Query 130 gaggaggaggaggaggaTGATGGTGACGACTCGGAATCTGATTTTCTGTGTTTGTTTTGT 189
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 119 GA-GAGGAGGAGGAGGATGA---CGACGACTCGGAATCTGATTTTCTGTGTTTGTTTTGT 174
Query 190 GATTCTCACTTCGTTTCCTGTGATTTACTCTTCGAACACTGTCGTCTAAGCCACGGATTC 249
|||||||||||||| ||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 175 GATTCTCACTTCGTCTCCTGTGATTTACTCTTTGAACACTGTCGTCTGAGGCACGGGTTT 234
Query 250 GACTTTCATGGAGTTAGAAAGGAATTGAAGCTCGATTTCTACTCTTCTTTTAAGCTCATC 309
|| |||||| || ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 235 GATTTTCATCGAATTAGAAAGGAAATGAAGCTCGATTTCTACTCTTCGTTTAAGCTCATC 294
Query 310 AACTATATTCGCTCACAGGTGGCTGAGAACATGTGTTTCAGTTGGAAGATTGAAGCTGAT 369
||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||
Sbjct 295 AACTATATTCGCTCAAAGGTGGCGGAGAACAAATGTTGGAGTTGGAAGATTGAAGCTGAT 354
Query 370 GATTACAAAGATGTTAAGTTTCCTTGGGATGAAGAGAAGTATCTGAAGCCTTTTTGGCAG 429
|||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 355 GATTTCAATGATGTTAAGTTTCCTTGGGATGAAGACAAGTATCTGAAGCCCGTTTGGCAG 414
Query 430 GAGGATTCACTTTTGTACTCGTTTGCAGATGATGAGGAAGATGAAGAAGTCACGTTTGAC 489
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 415 GAGGATTCACTTTTGTACTCATTTGCAGATGATGAGGAAGATGAAGAAGACACGTTTGAC 474
Query 490 AGAGAGGAAGTGATGGAGGAATTGCAGAAGCTTGGGGATTTAAGCATTGATGTCGAGGCT 549
||||||||||| |||||||| |||| ||| |||||||||||| |||||||||| ||||||
Sbjct 475 AGAGAGGAAGTCATGGAGGATTTGCGGAAACTTGGGGATTTATGCATTGATGTTGAGGCT 534
Query 550 TTAGGGGAAAGCTCAATGTCGAACAGTGATAAATGCAATATAAATGGAAGTAAGGATGTA 609
|||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 535 TTAGGGGAAACCTCAATGTCGAACAATGATAAATGCAACATAAATGGAAATAAGGATGTA 594
Query 610 ACTTCGCTCTCAAACTGCAATGGCCTAAAGCAAAGTTCTGCGGATGATTTGATAGTCAAT 669
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 595 ACTTTGCTCTCAAACTGCAATGGCCTGAAGCAAAGTTCTGCGGATGATTTGATAGTCAAT 654
Query 670 GGGAAAGATGCAGAACCAAAGGTTTGTGATGGAAGGCTAGTTAATAGGAACATCAGAAAG 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 GGGAAAGATGCAGAACCAAAGGTTTGTGATGGAAGGCTAGTTAATAGGAACATCAAAAAG 714
Query 730 GTGAATGAGAACTATTTTGGATCTTATAGTTCGTTTGGCATTCACAGGGAGATGCTAAGT 789
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 715 GTGAATGAAAACTATTTTGGATCTTATAGTTCGTTTGGCATTCACAAGGAGATGCTAAAT 774
Query 790 GATAAGGTTAGAACAGAAGCATACCGAGATGCACTTTTGAAGAATCCTACTCTCTTGAAT 849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 GATAAGGTTAGAACAGAAGCATACCGAGATGCACTTTTGAAGAATCCTACTCTCTTGAGT 834
Query 850 GGCTCTGTTGTAATGGATGTTGGTTGTGGAACTGGGATATTGAGTCTTTTTGCTGCTAAA 909
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 835 GGCTCTGTTGTAATGGATGTTGGTTGTGGAACTGGGATATTGAGTCTCTTTGCTGCTAAA 894
Query 910 GCTGGGGCTTCAAGGGTAGTTGCAGTTGAAGCTAGTGAGAAGATGGCCAAAGTTGC-AAC 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 895 GCTGGGGCTTCAAGGGTAGTTGCAGTTGAAGCTAGTGAGAAGATGGCCAAAGTTGCTTCC 954
Query 969 TA--AGATTGCGAAGGATAACAAAGTATTCAATGATAACGAGCATAATGGGGTACTTGAA 1026
| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 955 AAGCAGATTGCGAAGGATAACAAAGTATTCAATGATAACGAGCATAATGGCGTTCTTGAA 1014
Query 1027 GTTGCACACTCAATGGTAGAAGAGCTAGATAAATCGATACAGATTC-AGCCTCATAGTGT 1085
||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 1015 GTTGCACACTCAATGGTTGAAGAGCTAGATAAATCGATACAGATTCAAG-CTCATAGTGT 1073
Query 1086 TGATGTGTTAGTCAGCGAATGGATGGGATACTGCCTTTTATATGAGTCAATGCTCAGTTC 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGATGTGTTAGTCAGCGAATGGATGGGATACTGCCTTTTATATGAGTCAATGCTCAGTTC 1133
Query 1146 TGTGCTCTATGCAAGAGATCGGTGGTTGAAACCTGGAGGTGCAATCCTCCCTGACACGGC 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGTGCTCTATGCAAGAGATCGGTGGTTGAAACCTGGAGGTGCAATCCTCCCTGACACGGC 1193
Query 1206 CACTATGTTTGTTGCGGGATTTGGAAAAGGTGCAACAAGTCTTCCTTTCTGGGAAGATGT 1265
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1194 AACTATGTTTGTTGCGGGATTTGGAAAAGGTGCCACAAGTCTTCCTTTCTGGGAAGATGT 1253
Query 1266 CTATGGCTTTGACATGTCTTCAATTGGGAAGGAGATACATGACGACACTACTCGACTTCC 1325
||||||||||||||||||||||||||| ||||| |||| ||| |||||| ||||||||||
Sbjct 1254 CTATGGCTTTGACATGTCTTCAATTGGTAAGGAAATACTTGAAGACACTGCTCGACTTCC 1313
Query 1326 CATTGTTGACGTTATAGCGGAGCGTGATTTAGTGACACAGCCTACCCTTCTTCAGACATT 1385
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1314 CATTGTTGACGTTATAGAGGAGCGTGATTTAGTGACACAGCCTGCCCTTCTTCAGACATT 1373
Query 1386 TGACCTGGCTACCATGAAACCGGATGAAGTAGATTTCACAGCAACGGCAACGCTGGAGCC 1445
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1374 TGACCTGTCTACCATGAAACCGGATGAAGTAGATTTCACAGCAACCGCAACGCTGAAGCC 1433
Query 1446 CACTGAGTCAGAAGCAAAAACTAGGTTGTGCCATGGTGTTGTGTTGTGGTTTGACACAGG 1505
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1434 CACTGAGTCAGAAGCAAAAACTAGGTTGTGCCACGGTGTTGTGTTGTGGTTCGACACAGG 1493
Query 1506 TTTCACCAGTAGGTTCTGTAAGGAAAACCCAACCGTACTATCCACATCACCCTACACTCC 1565
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TTTCACCAATAGGTTCTGCAAGGAAAACCCAACCGTACTATCCACATCACCCTACACTCC 1553
Query 1566 CCCAACACACTGGGCTCAGACAATCTTAACTTTTCAAGAACCAATCTCAGTGGCACCGGC 1625
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1554 CCCAACACACTGGGCTCAGACAGTCTTAACTTTTCAAGAACCAATCTCAGTGGCACCTGC 1613
Query 1626 CTCGGTTCTGTCTGGTAATGACAGAAGAGAAGCCATCGGAACCGAAGAGTGTCCCGCCTC 1685
|||| ||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 1614 CTCGCTTCTGTCTGGTGATGACAGAAGAGGAGCCATTGGAACCAAAGAGTGTCCCGCCTC 1673
Query 1686 AAGCATTCATCTGCGTGTGAGTGTTGCACGAGCACATGAGCATCGCAGCATAGACATCTC 1745
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1674 AAGCATTCATCTGCGTGTGAGTGTTGCACGAGCGCATGAGCATCGCAGCATTGACATCTC 1733
Query 1746 GTTAGAGGCTACTGGGCTGAGCTCAAAGGGTCAGAAGCGTCACTGGCCGGTTCAGATATT 1805
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1734 GTTAGAGGCTACTGGGCTGAGCTCAAACGGTCAGAAGCGTCGCTGGCCGGTTCAGATATT 1793
Query 1806 TAATCTATGA 1815
||||||||||
Sbjct 1794 TAATCTATGA 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5