BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12290.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478591 jgi|Araly1|478591|fgenesh2_kg.3__1292__AT3G12290.1 1613 0.0
> Ahg478591 jgi|Araly1|478591|fgenesh2_kg.3__1292__AT3G12290.1
Length=1016
Score = 1613 bits (873), Expect = 0.0
Identities = 944/979 (96%), Gaps = 1/979 (0%)
Strand=Plus/Plus
Query 78 TCCTAGTGGCTCATGGCGTCATCATCTGATCACACGGCGAAGATAATCGACGGCAAGGCG 137
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 39 TCCTAGTGGATCATGGCGTCATCATCTGATCACACGGCAAAGATAATCGACGGAAAGGCG 98
Query 138 ATTGCTCATACCATCAGATCAGAGATCGCCGAGGAAGTTCGCGGTCTATCTGAGAAACAC 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 ATTGCTCATACCATCCGATCAGAGATCGCCGAGGAAGTTCGCGGTCTATCTGAGAAACAC 158
Query 198 GGCAAGGTCCCAGGACTAGCTGTAGTTATTGTTGGGAGCCGAAAGGATTCACAGACCTAT 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GGCAAGGTCCCAGGACTAGCTGTAGTTATTGTTGGGAGCCGAAAGGATTCACAGACCTAT 218
Query 258 GTGAATACGAAGAGGAAAGCGTGCGCTGAGGTTGGGATTAAGTCATTTGACGTGGGCCTA 317
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 219 GTGAATACGAAGAGGAAAGCATGCGCTGAGGTTGGGATTAAGTCATTTGATGTGGGCCTA 278
Query 318 CCAGAGGAAGTTTCTGAAGCTGATCTTATTAGCAAAGTTCATGAACTAAATTCAAATCCG 377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 279 CCAGAGGAAGTTTCTGAAGCTGATCTTATAAGCAAAGTTCATGAACTAAATTCAAATCCG 338
Query 378 GATGTCCATGGCATATTAGTTCAACTCCCATTGCCGAAACATATTAATGAGGAGCATATA 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 339 GATGTCCATGGCATATTAGTTCAACTCCCATTGCCGAAACATATTAATGAGGAGAATGTT 398
Query 438 TTGGGTGCAATCAGCATTGATAAAGATGTCGATGGCTTCCATCCTTTGAATATTGGTAAG 497
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 399 TTGGGTGCAATCAGCATTGATAAAGATGTTGATGGCTTCCATCCTTTGAATATTGGTAAG 458
Query 498 CTAGCCATGAAAGGCAGAGAACCCCTCTTCCTTCCTTGCACCCCAAAGGGATGTTTGGAA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 459 CTAGCCATGAAAGGCAGAGAACCCCTCTTCCTTCCTTGCACCCCAAAGGGATGCTTGGAA 518
Query 558 CTCCTAGCTAGAAGCGGCGTAAAGATAAAGGGGCAACGAGCAGTTGTTGTAGGTCGGAGT 617
||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCTTAGCGAGAAGTGGGGTAAAGATAAAGGGGCAACGAGCAGTTGTTGTAGGTCGGAGT 578
Query 618 AACATTGTTGGTTTGCCCGTTTCACTTCTTTTGCTCAAGGCTGATGCTACTGTCACAACT 677
|| || |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 579 AATATCGTTGGTTTACCTGTTTCGCTTCTATTGCTCAAGGCTGATGCTACTGTTACAACT 638
Query 678 GTACATTCTCACACCAAGGATCCTGAGGCTATCATACGGGAAGCTGACATTGTTATTGCT 737
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 639 GTACATTCTCACACCAAGGATCCTGAGGCTATCATACGGGAAGCTGACATCGTTATTGCT 698
Query 738 GCATGCGGACAAGCCCACATGATTAAGGGCAACTGGATAAAGCCAGGGGCTGCAGTAATT 797
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 699 GCTTGCGGACAAGCCCACATGATTAAGGGCAACTGGATAAAGCCAGGGGCTGCGGTAATC 758
Query 798 GATGTTGGAACTAATGCAGTCAGCGACCCGAGCAAGAAATCAGGATACCGGTTGGTTGGA 857
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GATGTTGGAACTAACGCAGTCAGCGACCCGAGCAAGAAATCAGGATACCGGTTGGTTGGA 818
Query 858 GATGTTGATTTCGCAGAAGCTTCAAAAGTTGCAGGTTTCATAACTCCGGTCCCTGGTGGT 917
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 819 GATGTCGATTTTGCAGAAGCTTCTAAAGTTGCAGGTTTCATAACTCCGGTCCCTGGTGGT 878
Query 918 GTAGGCCCAATGACAGTGGCAATGCTTCTCAGGAACACCGTAGACGGTGCCAAGCGTGTC 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GTAGGCCCAATGACAGTGGCAATGCTTCTCAGGAACACCGTAGACGGTGCCAAGCGTGTC 938
Query 978 TTTGGCGAGTAAAACAATCTACTGTATGTAATAAAGAAACCAAGAGTTTCTCCATTCTGT 1037
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 939 TTTGGCGAGTAAAACTTTCTACTGTATGTAATAAAGAAACCA-GAGTTTCTCCATTCTGT 997
Query 1038 AATTGTGTACTTGGCTTGA 1056
||||||| |||||||||||
Sbjct 998 AATTGTGCACTTGGCTTGA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5