BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12300.1
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928954 jgi|Araly1|928954|scaffold_301411.1 1005 0.0
> Ahg928954 jgi|Araly1|928954|scaffold_301411.1
Length=613
Score = 1005 bits (544), Expect = 0.0
Identities = 590/612 (96%), Gaps = 3/612 (0%)
Strand=Plus/Plus
Query 45 ATTCCGGAGGAGCAGGAAGATGTTCAAGAACACGTTTCAATCTGGGTTTCTGTCTATTTT 104
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3 ATT-CGGAGAAGCAGGAAGATGTTCAAGAACACGTTTCAGTCTGGGTTTCTGTCTATTTT 61
Query 105 GTACAGTCTAGGAAGTAAGCCTCTTCAGATATGGGATAAAGAAGTTGTGGATGGACATGT 164
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 62 GTACAGTCTAGGAAGCAAGCCTCTGCAGATATGGGATAAAGAAGTTGTGGATGGGCATGT 121
Query 165 GAAGCGTTGCCATGATGATGACATTCAATCCAATGTGCTTGAAGTAGTTGGATCAAATAT 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 122 GAAGCGTTGCCATGATGATGACATTCAATCCAATGTGCTTGAAGTAGTTGGATCAAACAT 181
Query 225 TCAGTCTACATACATTACATGTCCTGCTGATCTTTCCGCTACTCTTGGTATCAAACTTCC 284
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 182 CCAGTCTACATATATTACATGTCCTGCTGATCTTTCCGCAACTCTTGGTATCAAACTTCC 241
Query 285 TTTTTTGGTCTTGGTGGTGAAGGATATGAAGAAATATTTCTCATTCGAGATTCAGATTCT 344
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 242 TTTTTTGGTCTTGGTAGTGAAGAATATGAAGAAATATTTCTCATTCGAGATTCAGATTCT 301
Query 345 GGATGACAAGAATGTTCGCCGGCGTTTCCGAGCTTCTAACTTTCAAGCTGTCACTAGAGT 404
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGATGACAAGAATGTGCGCCGCCGTTTCCGAGCTTCTAACTTTCAAGCTGTCACTAGAGT 361
Query 405 AAAGCCGTATATTTGCACAATGCCACTGAAGATGGACGAGGGATGGAATCAAATCCAGCT 464
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AAAGCCATATATTTGCACAATGCCACTGAAGATGGACGAGGGATGGAATCAAATCCAGCT 421
Query 465 TAACTTAGCGGATCTTACTAGGAGAGCTTATGGGACTAATTATGCTGAGACATTGCGAGT 524
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TAACTTAGCTGATCTTACTAGGAGAGCTTATGGGACTAATTATGCTGAGACATTGCGAGT 481
Query 525 TCAGATTCATGCTAACTGCCGCCTTAGGCGCATATATTTTGCTGATCGTCTCTACTCTGA 584
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 482 TCAGATTCATGCTAACTGCCGCGTTAGGCGCATATATTTTGCTGACCGTCTCTACTCAGA 541
Query 585 AGAGGAGCTTCCTCCGGAATTCAAGCTGTATCT-CCCAGTGCAGAAAGCATGATAAGTTC 643
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 542 AGAGGAGCTTCCTCCGGAATTCAAGCTGTATCTTCCC-GTGCAGAAAGCATGATAAGTTC 600
Query 644 ATTCCGAATGCT 655
||||| ||||||
Sbjct 601 ATTCCCAATGCT 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5